Dating cryptodiran nodes: origin and diversification of the turtle superfamily Testudinoidea.
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[1] W. Joyce,et al. Congruence, non-homology, and the phylogeny of basal turtles , 2012 .
[2] I. Danilov. A New Lindholmemydid Genus (Testudines: Lindholmemydidae) from the Mid-Cretaceous of Uzbekistan , 2011 .
[3] Yuchi Zheng,et al. Exploring patterns and extent of bias in estimating divergence time from mitochondrial DNA sequence data in a particular lineage: a case study of salamanders (order Caudata). , 2011, Molecular biology and evolution.
[4] W. Joyce,et al. A new kinosternoid from the Late Cretaceous Hell Creek Formation of North Dakota and Montana and the origin of the Dermatemys mawii lineage , 2011 .
[5] T. Velivetskaya,et al. Cretaceous climatic oscillations in the Bering area (Alaska and Koryak Upland): Isotopic and palaeontological evidence , 2011 .
[6] A. Rhodin,et al. Turtles of the World, 2010 Update: Annotated Checklist of Taxonomy, Synonymy, Distribution, and Conservation Status , 2010 .
[7] W. Joyce,et al. A review of the Mesozoic turtles of the Junggar Basin (Xinjiang, Northwest China) and the paleobiogeography of Jurassic to Early Cretaceous Asian testudinates , 2010, Palaeobiodiversity and Palaeoenvironments.
[8] H. Shaffer,et al. Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life. , 2010, Molecular phylogenetics and evolution.
[9] E. S. Gaffney,et al. The cranial morphology of Kayentachelys, an Early Jurassic cryptodire, and the early history of turtles , 2009 .
[10] A. Tripati,et al. Climate sensitivity to Arctic seaway restriction during the early Paleogene , 2009 .
[11] F. Janzen,et al. The Phylogenetic Position of the Snapping Turtles (Chelydridae) Based on Nucleotide Sequence Data , 2009, Copeia.
[12] V. N. Beniamovski,et al. Paleogene floral assemblages around epicontinental seas and straits in Northern Central Eurasia: proxies for climatic and paleogeographic evolution , 2009 .
[13] P. Barrett,et al. A new stem turtle from the Middle Jurassic of Scotland: new insights into the evolution and palaeoecology of basal turtles , 2009, Proceedings of the Royal Society B: Biological Sciences.
[14] H. Shaffer,et al. Conflicting mitochondrial and nuclear phylogenies for the widely disjunct Emys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization. , 2009, Systematic biology.
[15] R. Russell,et al. Recoding of Translation in Turtle Mitochondrial Genomes: Programmed Frameshift Mutations and Evidence of a Modified Genetic Code , 2008, Journal of Molecular Evolution.
[16] H. Shaffer,et al. Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles. , 2008, Molecular phylogenetics and evolution.
[17] Minh Le,et al. Phylogenetic relationships and biogeographical history of the genus Rhinoclemmys Fitzinger, 1835 and the monophyly of the turtle family Geoemydidae (Testudines: Testudinoidea) , 2008 .
[18] J. Sterli. A new, nearly complete stem turtle from the Jurassic of South America with implications for turtle evolution , 2008, Biology Letters.
[19] J. F. Parham,et al. A Reassessment Of Some Poorly Known Turtles From the Middle Jurassic Of China, With Comments On the Antiquity Of Extant Turtles , 2008 .
[20] J. F. Parham,et al. Caveats on the Use of Fossil Calibrations for Molecular Dating: A Comment on Near et al. , 2007, The American Naturalist.
[21] H. Shaffer,et al. Delimiting species in recent radiations. , 2007, Systematic biology.
[22] Ziheng Yang. PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.
[23] Michael S. Y. Lee,et al. Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1. , 2007, Systematic biology.
[24] Michael S. Y. Lee,et al. Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds , 2007, Biology Letters.
[25] W. Joyce. Phylogenetic Relationships of Mesozoic Turtles , 2007 .
[26] S. Hervet. THE OLDEST EUROPEAN PTYCHOGASTERID TURTLE (TESTUDINOIDEA) FROM THE LOWERMOST EOCENE AMBER LOCALITY OF LE QUESNOY (FRANCE, YPRESIAN, MP7) , 2006 .
[27] Tony O’Hagan. Bayes factors , 2006 .
[28] E. S. Gaffney,et al. EVOLUTION OF THE SIDE-NECKED TURTLES: THE FAMILIES BOTHREMYDIDAE, EURAXEMYDIDAE, AND ARARIPEMYDIDAE , 2006 .
[29] J. F. Parham,et al. A REDESCRIPTION OF ‘PLESIOCHELYS’ TATSUENSIS FROM THE LATE JURASSIC OF CHINA, WITH COMMENTS ON THE ANTIQUITY OF THE CROWN CLADE CRYPTODIRA , 2006 .
[30] S. Ho,et al. Relaxed Phylogenetics and Dating with Confidence , 2006, PLoS biology.
[31] James F Parham,et al. The complete mitochondrial genome of the enigmatic bigheaded turtle (Platysternon): description of unusual genomic features and the reconciliation of phylogenetic hypotheses based on mitochondrial and nuclear DNA , 2005, BMC Evolutionary Biology.
[32] D. Martill,et al. SOLNHOFEN‐STYLE SOFT‐TISSUE PRESERVATION IN A NEW SPECIES OF TURTLE FROM THE CRATO FORMATION (EARLY CRETACEOUS, APTIAN) OF NORTH‐EAST BRAZIL , 2005 .
[33] H. Shaffer,et al. Molecular phylogenetics and evolution of turtles. , 2005, Molecular phylogenetics and evolution.
[34] H. Shaffer,et al. Assessing Concordance of Fossil Calibration Points in Molecular Clock Studies: An Example Using Turtles , 2004, The American Naturalist.
[35] Michael P. Cummings,et al. PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .
[36] H. Shaffer,et al. Multiple data sets, high homoplasy, and the phylogeny of softshell turtles (Testudines: Trionychidae). , 2004, Systematic biology.
[37] J. F. Parham,et al. DEVELOPING A PROTOCOL FOR THE CONVERSION OF RANK-BASED TAXON NAMES TO PHYLOGENETICALLY DEFINED CLADE NAMES, AS EXEMPLIFIED BY TURTLES , 2004 .
[38] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[39] J. Huelsenbeck,et al. Bayesian phylogenetic analysis of combined data. , 2004, Systematic biology.
[40] W. Joyce,et al. Palaeoecology of Triassic stem turtles sheds new light on turtle origins , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[41] R. Berner,et al. CO2 as a Primary Driver of Phanerozoic Climate Change , 2003 .
[42] H. Jenkyns. Evidence for rapid climate change in the Mesozoic–Palaeogene greenhouse world , 2003, Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.
[43] J. F. Parham,et al. THE ANTIQUITY OF AFRICAN TORTOISES , 2003 .
[44] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[45] A. Alekseev,et al. Cretaceous palaeogeography of the North-Eastern Peri-Tethys , 2003 .
[46] F. Cecconi,et al. Structural and Sequence Evolution of U17 Small Nucleolar RNA (snoRNA) and Its Phylogenetic Congruence in Chelonians , 2003, Journal of Molecular Evolution.
[47] D. Brinkman. A review of nonmarine turtles from the Late Cretaceous of Alberta , 2003 .
[48] Hirohisa Kishino,et al. Divergence time and evolutionary rate estimation with multilocus data. , 2002, Systematic biology.
[49] M. D. L. Fuente. Oldest world Chelidae (Chelonii, Pleurodira), from the Cretaceous of Patagonia, Argentina , 2001 .
[50] Fredrik Ronquist,et al. Patterns of animal dispersal, vicariance and diversification in the Holarctic , 2001 .
[51] John P. Huelsenbeck,et al. MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..
[52] R. Norris,et al. Warm tropical ocean surface and global anoxia during the mid-Cretaceous period , 2001, Nature.
[53] W. Bruno,et al. Performance of a divergence time estimation method under a probabilistic model of rate evolution. , 2001, Molecular biology and evolution.
[54] R. Hirayama,et al. DISTRIBUTION AND BIOGEOGRAPHY OF NON-MARINE CRETACEOUS TURTLES , 2000 .
[55] Wei Qian,et al. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.
[56] X. Huang,et al. CAP3: A DNA sequence assembly program. , 1999, Genome research.
[57] J. Wiens. Combining data sets with different phylogenetic histories. , 1998, Systematic biology.
[58] H. Kishino,et al. Estimating the rate of evolution of the rate of molecular evolution. , 1998, Molecular biology and evolution.
[59] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[60] H. Shaffer,et al. Tests of turtle phylogeny: molecular, morphological, and paleontological approaches. , 1997, Systematic biology.
[61] Ross Ihaka,et al. Gentleman R: R: A language for data analysis and graphics , 1996 .
[62] John J. Wiens,et al. Polymorphic Characters in Phylogenetic Systematics , 1995 .
[63] J. Iverson. A revised checklist with distribution maps of the turtles of the world , 1992 .
[64] E. S. Gaffney,et al. Sinaspideretes is not the oldest trionychid turtle , 1992 .
[65] J. Felsenstein. CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.
[66] S. Gaffney,et al. Evolution of the Side-Necked Turtles: the Family Podocnemididae (project) , 2014 .
[67] N. Galtier,et al. RNA extraction from sauropsids blood: evaluation and improvement of methods , 2011 .
[68] Robert C Thomson,et al. Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles. , 2010, Systematic biology.
[69] Yoshio Sato,et al. A New Species of Pseudohyria (Matsumotoina) (Bivalvia: Trigonioidoidea) from the Early Cretaceous Sao Khua Formation, Khorat Group, Northeastern Thailand , 2010 .
[70] E. Buffetaut,et al. Basilochelys macrobios n. gen. and n. sp., a large cryptodiran turtle from the Phu Kradung Formation (latest Jurassic-earliest Cretaceous) of the Khorat Plateau, NE Thailand , 2009 .
[71] E. Buffetaut,et al. Turtle assemblages of the Khorat Group (Late Jurassic-Early Cretaceous) of NE Thailand and their palaeobiogeographical significance , 2009 .
[72] W. Joyce,et al. The cranial anatomy of the Early Jurassic turtle Kayentachelys aprix , 2007 .
[73] François Escuillié,et al. Rhinochelys (Chelonioidea: Protostegidae) from the Late Cretaceous (Cenomanian) of Nammoura, Lebanon , 2006 .
[74] Yong Wang,et al. An index of substitution saturation and its application. , 2003, Molecular phylogenetics and evolution.
[75] M. Godinot. Arguments for a mammalian and reptilian dispersal from Asia to Europe during the Paleocene-Eocene boundary interval , 2003 .
[76] M. Salemi,et al. The phylogenetic handbook : a practical approach to DNA and protein phylogeny , 2003 .
[77] I. Danilov. Gravemys Sukhanov and Narmandakh, 1983 (Testudinoidea: Lindholmemydidae) from the Late Cretaceous of Asia: new data , 2003 .
[78] D. Swofford. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .
[79] A. Patricia,et al. TURTLE DIVERSITY AND ABUNDANCE THROUGH THE LOWER EOCENE WILLWOOD FORMATION OF THE SOUTHERN BIGHORN BASIN , 2001 .
[80] I. Danilov,et al. New data on lindholmemydid turtle Lindholmemys from the Late Cretaceous of Mongolia , 2001 .
[81] David Posada,et al. MODELTEST: testing the model of DNA substitution , 1998, Bioinform..
[82] P. Meylan. Peltochelys Dollo and the relationships among the genera of the Carettochelyidae (Testudines: Reptilia) , 1988 .
[83] Chen Pei-ji. Cretaceous paleogeography in China , 1987 .
[84] E. S. Gaffney. Phylogeny of the chelydrid turtles : a study of shared derived characters in the skull / Eugene S. Gaffney --. , 1975 .
[85] J. Claude,et al. EARLY EOCENE TESTUDINOID TURTLES FROM SAINT-PAPOUL, FRANCE, WITH COMMENTS ON THE EARLY EVOLUTION OF MODERN TESTUDINOIDEA , 2022 .
[86] Gapped BLAST and PSI-BLAST: A new , 1997 .