RNA in motion.
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[1] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[2] A. Szabó,et al. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results , 1982 .
[3] D. Draper,et al. High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA , 1997, Nature Structural Biology.
[4] D. Draper,et al. The structure of free L11 and functional dynamics of L11 in free, L11-rRNA(58 nt) binary and L11-rRNA(58 nt)-thiostrepton ternary complexes. , 2007, Journal of Molecular Biology.
[5] G. Stock,et al. Molecular dynamics simulation of the structure, dynamics, and thermostability of the RNA hairpins uCACGg and cUUCGg. , 2008, The journal of physical chemistry. B.
[6] R D Klausner,et al. Structure and dynamics of the iron responsive element RNA: implications for binding of the RNA by iron regulatory binding proteins. , 1997, Journal of molecular biology.
[7] H. Al‐Hashimi,et al. Dynamics of large elongated RNA by NMR carbon relaxation. , 2007, Journal of the American Chemical Society.
[8] J. Williamson,et al. Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation. , 2002, Journal of molecular biology.
[9] H. Schwalbe,et al. Domain Reorientation and Induced Fit upon RNA Binding: Solution Structure and Dynamics of Ribosomal Protein L11 from Thermotoga maritima , 2005, Chembiochem : a European journal of chemical biology.
[10] S. Joseph,et al. Simulating movement of tRNA into the ribosome during decoding. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[11] H. Schwalbe,et al. NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops , 2008, Nucleic acids research.
[12] J. Frank,et al. Functional conformations of the L11-ribosomal RNA complex revealed by correlative analysis of cryo-EM and molecular dynamics simulations. , 2006, RNA.
[13] H. Schwalbe,et al. L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy , 2006, Nucleic acids research.
[14] G. Lipari. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules , 1982 .
[15] T. Steitz,et al. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.
[16] Ioan Andricioaei,et al. iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge. , 2007, Biophysical journal.
[17] A. Dunker,et al. Disorder and sequence repeats in hub proteins and their implications for network evolution. , 2006, Journal of proteome research.
[18] J. Šponer,et al. Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA , 2007, Nucleic acids research.
[19] H. Al‐Hashimi,et al. Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg2+ binding: role in the kissing–duplex structural transition , 2007, Nucleic acids research.
[20] Thomas A Steitz,et al. Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: analysis of L11 movements. , 2007, Journal of molecular biology.
[21] Nathan A. Baker,et al. Iron Responsive Element RNA Flexibility Described by NMR and Isotropic Reorientational Eigenmode Dynamics , 2005, Journal of biomolecular NMR.
[22] Alexander D. MacKerell,et al. CHARMM force field parameters for simulation of reactive intermediates in native and thio‐substituted ribozymes , 2007, J. Comput. Chem..
[23] A. Szabó,et al. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity , 1982 .
[24] Eaton E Lattman,et al. A compact RNA tertiary structure contains a buried backbone-K+ complex. , 2002, Journal of molecular biology.
[25] A. Garcia,et al. Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin. , 2008, Journal of the American Chemical Society.
[26] J. Šponer,et al. Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers , 2007 .
[27] Daniel Svozil,et al. Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers. , 2007, Biophysical journal.
[28] Martin Gruebele,et al. Exploring the energy landscape of a small RNA hairpin. , 2006, Journal of the American Chemical Society.
[29] J. McCutcheon,et al. A Detailed View of a Ribosomal Active Site The Structure of the L11–RNA Complex , 1999, Cell.
[30] Qi Zhang,et al. Resolving the Motional Modes That Code for RNA Adaptation , 2006, Science.
[31] Charles K. Fisher,et al. Visualizing spatially correlated dynamics that directs RNA conformational transitions , 2007, Nature.