Biopython Tutorial and Cookbook
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[1] Peter J. A. Cock,et al. Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython , 2012, BMC Bioinformatics.
[2] Leighton Pritchard,et al. Identification and localisation of the NB-LRR gene family within the potato genome , 2012, BMC Genomics.
[3] Peter M. Rice,et al. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants , 2009, Nucleic acids research.
[4] Bartek Wilczynski,et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics , 2009, Bioinform..
[5] Max Mergeay,et al. Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids , 2009, Antonie van Leeuwenhoek.
[6] Cristian R. Munteanu,et al. Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices. , 2008, Journal of theoretical biology.
[7] Mark Borodovsky,et al. Problems and Solutions in Biological Sequence Analysis , 2006 .
[8] Leighton Pritchard,et al. Comparative genomics reveals what makes an enterobacterial plant pathogen. , 2006, Annual review of phytopathology.
[9] James A. Casbon,et al. A high level interface to SCOP and ASTRAL implemented in Python , 2006, BMC Bioinformatics.
[10] Nick V. Grishin,et al. PALSSE: A program to delineate linear secondary structural elements from protein structures , 2005, BMC Bioinformatics.
[11] Gaston H. Gonnet,et al. Empirical codon substitution matrix , 2005, BMC Bioinformatics.
[12] T. Hamelryck. An amino acid has two sides: A new 2D measure provides a different view of solvent exposure , 2005, Proteins.
[13] Alok J. Saldanha,et al. Java Treeview - extensible visualization of microarray data , 2004, Bioinform..
[14] J. Nolan,et al. Open source clustering software. , 2004, Bioinformatics.
[15] Bernard Manderick,et al. PDB file parser and structure class implemented in Python , 2003, Bioinform..
[16] Thomas Hamelryck,et al. Efficient identification of side‐chain patterns using a multidimensional index tree , 2003, Proteins.
[17] Victor Ladero,et al. The Dilemma of Phage Taxonomy Illustrated by Comparative Genomics of Sfi21-Like Siphoviridae in Lactic Acid Bacteria , 2002, Journal of bacteriology.
[18] C. Auffray,et al. Brief Gene Mapping Reports A / B / C / D / E / F / G , 2002, Cytogenetic and Genome Research.
[19] Harry Mangalam,et al. The Bio* toolkits - A Brief Preview , 2002, Briefings Bioinform..
[20] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[21] Ka Yee Yeung,et al. Principal component analysis for clustering gene expression data , 2001, Bioinform..
[22] Y. Hihara,et al. DNA Microarray Analysis of Cyanobacterial Gene Expression during Acclimation to High Light , 2001, Plant Cell.
[23] Jeffrey Chang,et al. Biopython: Python tools for computational biology , 2000, SIGB.
[24] J. Mesirov,et al. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[25] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[26] R. Durbin,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[27] T. Kohonen. Self-Organizing Maps , 1995, Springer Series in Information Sciences.
[28] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[29] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[30] Pierre L'Ecuyer,et al. Efficient and portable combined random number generators , 1988, CACM.
[31] Voratas Kachitvichyanukul,et al. Binomial random variate generation , 1988, CACM.
[32] M. Waterman,et al. A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. , 1987, Journal of molecular biology.
[33] D. Cavener,et al. Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates. , 1987, Nucleic acids research.
[34] A. Cornish-Bowden. Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984. , 1985, Nucleic acids research.
[35] Ralph Grishman,et al. Parsing , 1981, ACL.
[36] J. Hartigan. Clustering Algorithms , 1975 .
[37] Gene H. Golub,et al. Singular value decomposition and least squares solutions , 1970, Milestones in Matrix Computation.
[38] G. W. Snedecor. STATISTICAL METHODS , 1967 .
[39] Nabe. This is an Example , 2009 .
[40] E. Wingender,et al. TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..
[41] Robert Tibshirani,et al. The Elements of Statistical Learning: Data Mining, Inference, and Prediction, 2nd Edition , 2001, Springer Series in Statistics.
[42] Eric S. Lander. Array of hope , 1999, Nature Genetics.
[43] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.
[44] Anil K. Jain,et al. Algorithms for Clustering Data , 1988 .
[45] M. O. Dayhoff,et al. 22 A Model of Evolutionary Change in Proteins , 1978 .
[46] John W. Tukey,et al. Exploratory data analysis , 1977, Addison-Wesley series in behavioral science : quantitative methods.
[47] Sabine Landau,et al. Cluster Analysis , 1974 .
[48] Robin Sibson,et al. SLINK: An Optimally Efficient Algorithm for the Single-Link Cluster Method , 1973, Comput. J..
[49] L. Pritchard,et al. BIOINFORMATICSAPPLICATIONSNOTE GenomeDiagram: A Python Package for the Visualisation of Large-Scale Genomic Data , 2022 .