Allosteric Threonine Synthase

Threonine synthase (TS) is a fold-type II pyridoxal phosphate (PLP)-dependent enzyme that catalyzes the ultimate step of threonine synthesis in plants and microorganisms. Unlike the enzyme from microorganisms, plant TS is activated by S-adenosylmethionine (AdoMet). The mechanism of activation has remained unknown up to now. We report here the crystallographic structures of Arabidopsis thaliana TS in complex with PLP (aTS) and with PLP and AdoMet (aTS-AdoMet), which show with atomic detail how AdoMet activates TS. The aTS structure reveals a PLP orientation never previously observed for a type II PLP-dependent enzyme and explains the low activity of plant TS in the absence of its allosteric activator. The aTS-AdoMet structure shows that activation of the enzyme upon AdoMet binding triggers a large reorganization of active site loops in one monomer of the structural dimer and allows the displacement of PLP to its active conformation. Comparison with other TS structures shows that activation of the second monomer may be triggered by substrate binding. This structure also discloses a novel fold for two AdoMet binding sites located at the dimer interface, each site containing two AdoMet effectors bound in tandem. Moreover, aTS-AdoMet is the first structure of an enzyme that uses AdoMet as an allosteric effector.

[1]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[2]  G. Gilliland,et al.  Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase. , 1998, Structure.

[3]  B. Lee,et al.  The interpretation of protein structures: estimation of static accessibility. , 1971, Journal of molecular biology.

[4]  W. Kabsch A solution for the best rotation to relate two sets of vectors , 1976 .

[5]  J. Jarrett,et al.  Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme , 2004, Science.

[6]  G. Schneider,et al.  The manifold of vitamin B6 dependent enzymes. , 2000, Structure.

[7]  P. Burkhard,et al.  Three-dimensional structure of O-acetylserine sulfhydrylase from Salmonella typhimurium. , 1998, Journal of molecular biology.

[8]  Wolfgang Kabsch,et al.  Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants , 1993 .

[9]  Jennifer L. Martin,et al.  SAM (dependent) I AM: the S-adenosylmethionine-dependent methyltransferase fold. , 2002, Current opinion in structural biology.

[10]  R. Dumas,et al.  Allosteric activation of Arabidopsis threonine synthase by S-adenosylmethionine. , 1998, Biochemistry.

[11]  A. Vagin,et al.  MOLREP: an Automated Program for Molecular Replacement , 1997 .

[12]  D. Jahn,et al.  Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of Radical SAM enzymes , 2003, The EMBO journal.

[13]  J M Thornton,et al.  LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. , 1995, Protein engineering.

[14]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[15]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[16]  S. Ravanel,et al.  Characterization of an Arabidopsis thaliana cDNA encoding an S‐adenosylmethionine‐sensitive threonine synthase Threonine synthase from higher plants , 1996, FEBS letters.

[17]  Gilles Curien,et al.  A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana. , 2003, European journal of biochemistry.

[18]  V. Biou,et al.  Crystal structure of threonine synthase from Arabidopsis thaliana , 2001, Protein science : a publication of the Protein Society.

[19]  G. Kleywegt,et al.  Detecting folding motifs and similarities in protein structures. , 1997, Methods in enzymology.

[20]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[21]  I. Miyahara,et al.  Crystal Structures of Threonine Synthase from Thermus thermophilus HB8 , 2003, Journal of Biological Chemistry.

[22]  R. Huber,et al.  Structure and Function of Threonine Synthase from Yeast* , 2002, The Journal of Biological Chemistry.

[23]  E. Padlan,et al.  Three-dimensional structure of the tryptophan synthase alpha 2 beta 2 multienzyme complex from Salmonella typhimurium. , 1988, The Journal of biological chemistry.

[24]  K. Gerbling,et al.  Mechanisms of interaction of Escherichia coli threonine synthase with substrates and inhibitors. , 1994, Biochemistry.

[25]  G N Murshudov,et al.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement. , 2001, Acta crystallographica. Section D, Biological crystallography.