MicroRNA-138 Modulates DNA Damage Response by Repressing Histone H2AX Expression

Precise regulation of DNA damage response is crucial for cellular survival after DNA damage, and its abrogation often results in genomic instability in cancer. Phosphorylated histone H2AX (γH2AX) forms nuclear foci at sites of DNA damage and facilitates DNA damage response and repair. MicroRNAs (miRNA) are short, nonprotein-encoding RNA molecules, which posttranscriptionally regulate gene expression by repressing translation of and/or degrading mRNA. How miRNAs modulate DNA damage response is largely unknown. In this study, we developed a cell-based screening assay using ionizing radiation (IR)-induced γH2AX foci formation in a human osteosarcoma cell line, U2OS, as the readout. By screening a library of human miRNA mimics, we identified several miRNAs that inhibited γH2AX foci formation. Among them, miR-138 directly targeted the histone H2AX 3′-untranslated region, reduced histone H2AX expression, and induced chromosomal instability after DNA damage. Overexpression of miR-138 inhibited homologous recombination and enhanced cellular sensitivity to multiple DNA-damaging agents (cisplatin, camptothecin, and IR). Reintroduction of histone H2AX in miR-138 overexpressing cells attenuated miR-138–mediated sensitization to cisplatin and camptothecin. Our study suggests that miR-138 is an important regulator of genomic stability and a potential therapeutic agent to improve the efficacy of radiotherapy and chemotherapy with DNA-damaging agents. Mol Cancer Res; 9(8); 1100–11. ©2011 AACR.

[1]  Judy Lieberman,et al.  Promise and Challenge of Rna Interference–based Therapy for Cancer Journal of Clinical Oncology B I O L O G Y O F N E O P L a S I A , 2010 .

[2]  Hong Zhou,et al.  MicroRNA hsa-miR-138 inhibits adipogenic differentiation of human adipose tissue-derived mesenchymal stem cells through adenovirus EID-1. , 2011, Stem cells and development.

[3]  D. Brown,et al.  The promise of microRNA replacement therapy. , 2010, Cancer research.

[4]  Zhang,et al.  Oncogenic Wip1 Phosphatase Is Inhibited by miR-16 in the DNA Damage Signaling Pathway , 2010 .

[5]  A. Kolokythas,et al.  Downregulation of the Rho GTPase signaling pathway is involved in the microRNA‐138‐mediated inhibition of cell migration and invasion in tongue squamous cell carcinoma , 2010, International journal of cancer.

[6]  Xiaohong Zhao,et al.  miR-138 might reverse multidrug resistance of leukemia cells. , 2010, Leukemia research.

[7]  Ming Yao,et al.  Gain of miR-151 on chromosome 8q24.3 facilitates tumour cell migration and spreading through downregulating RhoGDIA , 2010, Nature Cell Biology.

[8]  Markus Löbrich,et al.  γH2AX foci analysis for monitoring DNA double-strand break repair: Strengths, limitations and optimization , 2010, Cell cycle.

[9]  R. Gatti,et al.  ATM is down-regulated by N-Myc–regulated microRNA-421 , 2010, Proceedings of the National Academy of Sciences.

[10]  Lu Jiang,et al.  MicroRNA-138 suppresses invasion and promotes apoptosis in head and neck squamous cell carcinoma cell lines. , 2009, Cancer letters.

[11]  S. Shenouda,et al.  MicroRNA function in cancer: oncogene or a tumor suppressor? , 2009, Cancer and Metastasis Reviews.

[12]  Junjie Chen,et al.  MRE11-RAD50-NBS1 Complex Dictates DNA Repair Independent of H2AX* , 2009, The Journal of Biological Chemistry.

[13]  W. Kuhne,et al.  Involvement of p54(nrb), a PSF partner protein, in DNA double-strand break repair and radioresistance , 2009, Nucleic acids research.

[14]  Christophe E. Redon,et al.  H2AX: functional roles and potential applications , 2009, Chromosoma.

[15]  W. V. van IJcken,et al.  MicroRNA‐mediated gene silencing modulates the UV‐induced DNA‐damage response , 2009, The EMBO journal.

[16]  In-Chul Park,et al.  Alteration of miRNA profiles by ionizing radiation in A549 human non-small cell lung cancer cells. , 2009, International journal of oncology.

[17]  Su-Jae Lee,et al.  Identification of ionizing radiation-responsive microRNAs in the IM9 human B lymphoblastic cell line. , 2009, International journal of oncology.

[18]  Jingchuan Sun,et al.  Mechanism of Replication-Coupled DNA Interstrand Crosslink Repair , 2008, Cell.

[19]  M. Greenberg,et al.  A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis , 2009, Nature Cell Biology.

[20]  I. Kohane,et al.  Tissue and Process Specific microRNA–mRNA Co-Expression in Mammalian Development and Malignancy , 2009, PloS one.

[21]  J. Lieberman,et al.  miR-24–mediated downregulation of H2AX suppresses DNA repair in terminally differentiated blood cells , 2009, Nature Structural &Molecular Biology.

[22]  Mircea Ivan,et al.  MicroRNA regulation of DNA repair gene expression in hypoxic stress. , 2009, Cancer research.

[23]  A. Ashworth,et al.  A high-throughput RNA interference screen for DNA repair determinants of PARP inhibitor sensitivity. , 2008, DNA repair.

[24]  F. Slack,et al.  MicroRNAs as potential cancer therapeutics , 2008, Oncogene.

[25]  D. Srivastava,et al.  microRNA-138 modulates cardiac patterning during embryonic development , 2008, Proceedings of the National Academy of Sciences.

[26]  F. Couch,et al.  Secondary mutations as a mechanism of cisplatin resistance in BRCA2-mutated cancers , 2008, Nature.

[27]  G. Wakabayashi,et al.  Downregulation of miR‐138 is associated with overexpression of human telomerase reverse transcriptase protein in human anaplastic thyroid carcinoma cell lines , 2008, Cancer science.

[28]  Imran Babar,et al.  MicroRNAs as potential agents to alter resistance to cytotoxic anticancer therapy. , 2007, Cancer research.

[29]  G. Obernosterer,et al.  Post-transcriptional regulation of microRNA expression. , 2006, RNA.

[30]  T. Helleday,et al.  Inhibition of poly (ADP-ribose) polymerase activates ATM which is required for subsequent homologous recombination repair , 2006, Nucleic acids research.

[31]  F. Alt,et al.  MDC1 maintains genomic stability by participating in the amplification of ATM-dependent DNA damage signals. , 2006, Molecular cell.

[32]  D. Weinstock,et al.  Assaying double-strand break repair pathway choice in mammalian cells using a targeted endonuclease or the RAG recombinase. , 2006, Methods in enzymology.

[33]  M. Yaffe,et al.  MDC1 Directly Binds Phosphorylated Histone H2AX to Regulate Cellular Responses to DNA Double-Strand Breaks , 2005, Cell.

[34]  F. Alt,et al.  Control of sister chromatid recombination by histone H2AX. , 2004, Molecular cell.

[35]  Jiri Bartek,et al.  Mdc1 couples DNA double‐strand break recognition by Nbs1 with its H2AX‐dependent chromatin retention , 2004, The EMBO journal.

[36]  P. Jeggo,et al.  ATM and DNA-PK Function Redundantly to Phosphorylate H2AX after Exposure to Ionizing Radiation , 2004, Cancer Research.

[37]  C. Croce,et al.  Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[38]  D. Bartel MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[39]  T. Ried,et al.  H2AX Haploinsufficiency Modifies Genomic Stability and Tumor Susceptibility , 2003, Cell.

[40]  M. Moynahan,et al.  The cancer connection: BRCA1 and BRCA2 tumor suppression in mice and humans , 2002, Oncogene.

[41]  F. Alt,et al.  Increased ionizing radiation sensitivity and genomic instability in the absence of histone H2AX , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Bo Xu,et al.  Convergence of the Fanconi Anemia and Ataxia Telangiectasia Signaling Pathways , 2002, Cell.

[43]  Michel C. Nussenzweig,et al.  Genomic Instability in Mice Lacking Histone H2AX , 2002, Science.

[44]  C. Hsiung,et al.  Definition of three minimal deleted regions by comprehensive allelotyping and mutational screening of FHIT,p16INK4A, and p19ARF genes in nasopharyngeal carcinoma , 2002, Cancer.

[45]  S. Elledge,et al.  The DNA damage response: putting checkpoints in perspective , 2000, Nature.

[46]  E. Rogakou,et al.  Megabase Chromatin Domains Involved in DNA Double-Strand Breaks in Vivo , 1999, The Journal of cell biology.

[47]  E. Rogakou,et al.  DNA Double-stranded Breaks Induce Histone H2AX Phosphorylation on Serine 139* , 1998, The Journal of Biological Chemistry.

[48]  F Liang,et al.  Chromosomal double-strand break repair in Ku80-deficient cells. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[49]  S. Horwitz,et al.  Mechanism of action of taxol. , 1992, Trends in pharmacological sciences.