Trait‐based species richness: ecology and macroevolution

Understanding the origins of species richness patterns is a fundamental goal in ecology and evolutionary biology. Much research has focused on explaining two kinds of species richness patterns: (i) spatial species richness patterns (e.g. the latitudinal diversity gradient), and (ii) clade-based species richness patterns (e.g. the predominance of angiosperm species among plants). Here, I highlight a third kind of richness pattern: trait-based species richness (e.g. the number of species with each state of a character, such as diet or body size). Trait-based richness patterns are relevant to many topics in ecology and evolution, from ecosystem function to adaptive radiation to the paradox of sex. Although many studies have described particular trait-based richness patterns, the origins of these patterns remain far less understood, and trait-based richness has not been emphasised as a general category of richness patterns. Here, I describe a conceptual framework for how trait-based richness patterns arise compared to other richness patterns. A systematic review suggests that trait-based richness patterns are most often explained by when each state originates within a group (i.e. older states generally have higher richness), and not by differences in transition rates among states or faster diversification of species with certain states. This latter result contrasts with the widespread emphasis on diversification rates in species-richness research. I show that many recent studies of spatial richness patterns are actually studies of trait-based richness patterns, potentially confounding the causes of these patterns. Finally, I describe a plethora of unanswered questions related to trait-based richness patterns.

[1]  J. Wiens,et al.  The evolution of reproductive modes and life cycles in amphibians , 2022, Nature Communications.

[2]  Michael J. Landis,et al.  Replicated radiation of a plant clade along a cloud forest archipelago , 2022, Nature Ecology & Evolution.

[3]  B. O’Meara,et al.  A flexible method for estimating tip diversification rates across a range of speciation and extinction scenarios , 2022, bioRxiv.

[4]  J. Wiens,et al.  Do mutualistic interactions last longer than antagonistic interactions? , 2021, Proceedings of the Royal Society B.

[5]  J. Wiens,et al.  Multicellularity and sex helped shape the Tree of Life , 2021, Proceedings of the Royal Society B.

[6]  C. Fonseca,et al.  Parthenogenesis is self-destructive for scaled reptiles , 2021, Biology Letters.

[7]  D. Reznick,et al.  The evolution of the placenta in poeciliid fishes , 2021, Current Biology.

[8]  J. Wiens,et al.  Species interactions have predictable impacts on diversification. , 2020, Ecology letters.

[9]  H. Letsch,et al.  Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera , 2020, Nature Communications.

[10]  T. Vasconcelos,et al.  Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae? , 2020, Molecular phylogenetics and evolution.

[11]  Matthew W. Pennell,et al.  Extant timetrees are consistent with a myriad of diversification histories , 2020, Nature.

[12]  A. Lira‐Noriega,et al.  Species-level drivers of mammalian ectoparasite faunas. , 2020, The Journal of animal ecology.

[13]  T. Vaughan,et al.  A Multitype Birth–Death Model for Bayesian Inference of Lineage-Specific Birth and Death Rates , 2020, Systematic biology.

[14]  A. Tanentzap,et al.  Angiosperm speciation cools down in the tropics , 2020, Ecology letters.

[15]  J. Wiens,et al.  The origins of acoustic communication in vertebrates , 2020, Nature Communications.

[16]  Austin H. Patton,et al.  Comparing Adaptive Radiations Across Space, Time, and Taxa. , 2020, The Journal of heredity.

[17]  T. Baker,et al.  Freezing and water availability structure the evolutionary diversity of trees across the Americas , 2019, Science Advances.

[18]  T. Vasconcelos,et al.  Biogeography and early diversification of Tapinotaspidini oil-bees support presence of Paleocene savannas in South America. , 2019, Molecular phylogenetics and evolution.

[19]  B. McGill,et al.  Unifying macroecology and macroevolution to answer fundamental questions about biodiversity , 2019, Global Ecology and Biogeography.

[20]  A. Leaché,et al.  Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians. , 2019, Systematic biology.

[21]  J. Beaulieu,et al.  Geophytism in monocots leads to higher rates of diversification. , 2019, The New phytologist.

[22]  Andrew J. Alverson,et al.  Diatoms diversify and turn over faster in freshwater than marine environments * , 2019, Evolution; international journal of organic evolution.

[23]  M. Rausher,et al.  Adaptation to hummingbird pollination is associated with reduced diversification in Penstemon , 2019, Evolution letters.

[24]  J. Bascompte,et al.  The Impact of Mutualisms on Species Richness. , 2019, Trends in ecology & evolution.

[25]  Jonathan M. Chase,et al.  Dissecting macroecological and macroevolutionary patterns of forest biodiversity across the Hawaiian archipelago , 2019, Proceedings of the National Academy of Sciences.

[26]  J. Wiens,et al.  Evolution of diet across the animal tree of life , 2019, Evolution letters.

[27]  F. Hartig,et al.  A model with many small shifts for estimating species-specific diversification rates , 2019, Nature Ecology & Evolution.

[28]  P. Vargas,et al.  Macroevolutionary dynamics of nectar spurs, a key evolutionary innovation. , 2019, The New phytologist.

[29]  P. Vargas,et al.  Being in the right place at the right time? Parallel diversification bursts favored by the persistence of ancient epizoochorous traits and hidden factors in Cynoglossoideae. , 2019, American journal of botany.

[30]  J. Wiens,et al.  Time Explains Regional Richness Patterns within Clades More Often than Diversification Rates or Area , 2019, The American Naturalist.

[31]  William A. Freyman,et al.  Stochastic Character Mapping of State‐Dependent Diversification Reveals the Tempo of Evolutionary Decline in Self‐Compatible Onagraceae Lineages , 2018, Systematic biology.

[32]  D. Soltis,et al.  Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae. , 2019, Molecular phylogenetics and evolution.

[33]  D. Soltis,et al.  Evolution of floral traits and impact of reproductive mode on diversification in the phlox family (Polemoniaceae). , 2018, Molecular phylogenetics and evolution.

[34]  D. Dimitrov,et al.  Microhabitat change drives diversification in pholcid spiders , 2018, BMC Evolutionary Biology.

[35]  H. Letsch,et al.  Climate and host‐plant associations shaped the evolution of ceutorhynch weevils throughout the Cenozoic , 2018, Evolution; international journal of organic evolution.

[36]  S. Ruane,et al.  Habits and characteristics of arboreal snakes worldwide: arboreality constrains body size but does not affect lineage diversification , 2018, Biological Journal of the Linnean Society.

[37]  M. Coll,et al.  An inverse latitudinal gradient in speciation rate for marine fishes , 2018, Nature.

[38]  S. Demissew,et al.  Evolutionary diversification of the African achyranthoid clade (Amaranthaceae) in the context of sterile flower evolution and epizoochory , 2018, Annals of botany.

[39]  D. Adams,et al.  Phylogenetic ANOVA: Group‐clade aggregation, biological challenges, and a refined permutation procedure , 2018, Evolution; international journal of organic evolution.

[40]  U. Kodandaramaiah,et al.  Digging their own macroevolutionary grave: fossoriality as an evolutionary dead end in snakes , 2018, Journal of evolutionary biology.

[41]  M. Prebus Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (hymenoptera: Formicidae) , 2017, BMC Evolutionary Biology.

[42]  R. Bonduriansky,et al.  Sexual Conflict, Facultative Asexuality, and the True Paradox of Sex. , 2017, Trends in ecology & evolution.

[43]  C. Lively,et al.  Why Sex? A Pluralist Approach Revisited. , 2017, Trends in ecology & evolution.

[44]  Samantha R Anderson,et al.  Out of the dark: 350 million years of conservatism and evolution in diel activity patterns in vertebrates , 2017, Evolution; international journal of organic evolution.

[45]  J. Wiens,et al.  Extinction and time help drive the marine-terrestrial biodiversity gradient: is the ocean a deathtrap? , 2017, Ecology letters.

[46]  J. Wiens,et al.  Microhabitat and Climatic Niche Change Explain Patterns of Diversification among Frog Families , 2017, The American Naturalist.

[47]  A. Forbes,et al.  Revisiting the particular role of host shifts in initiating insect speciation , 2017, Evolution; international journal of organic evolution.

[48]  J. Wiens,et al.  The origin of species richness patterns along environmental gradients: uniting explanations based on time, diversification rate and carrying capacity , 2017 .

[49]  N. Salamin,et al.  Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae , 2017, Proceedings of the Royal Society B: Biological Sciences.

[50]  S. Paudyal,et al.  Evolution of woody life form on tropical mountains in the tribe Spermacoceae (Rubiaceae). , 2017, American journal of botany.

[51]  R. Ree,et al.  Global biogeography of mating system variation in seed plants. , 2017, Ecology letters.

[52]  J. Wiens What explains patterns of biodiversity across the Tree of Life? , 2017, BioEssays : news and reviews in molecular, cellular and developmental biology.

[53]  J. Losos,et al.  Ecological Opportunity and Adaptive Radiation , 2016 .

[54]  J. Wiens,et al.  Diversification rates and species richness across the Tree of Life , 2016, Proceedings of the Royal Society B: Biological Sciences.

[55]  T. Ord,et al.  Repeated evolution of amphibious behavior in fish and its implications for the colonization of novel environments , 2016, Evolution; international journal of organic evolution.

[56]  A. Case,et al.  Why is gynodioecy a rare but widely distributed sexual system? Lessons from the Lamiaceae. , 2016, The New phytologist.

[57]  Brian C O'Meara,et al.  Detecting hidden diversification shifts in models of trait-dependent speciation and extinction , 2015, bioRxiv.

[58]  L. Harder,et al.  Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity , 2016, Proceedings of the Royal Society B: Biological Sciences.

[59]  A. Kandler,et al.  A multiple variance Brownian motion framework for estimating variable rates and inferring ancestral states , 2016 .

[60]  B. Laenen,et al.  Increased diversification rates follow shifts to bisexuality in liverworts. , 2016, The New phytologist.

[61]  Ç. Şekercioğlu,et al.  Omnivory in birds is a macroevolutionary sink , 2016, Nature Communications.

[62]  J. Levine Ecology: A trail map for trait-based studies , 2015, Nature.

[63]  D. Schluter Speciation, Ecological Opportunity, and Latitude , 2015, The American Naturalist.

[64]  J. Wiens,et al.  Testing Convergence Versus History: Convergence Dominates Phenotypic Evolution for over 150 Million Years in Frogs. , 2016, Systematic biology.

[65]  P. Fine Ecological and Evolutionary Drivers of Geographic Variation in Species Diversity , 2015 .

[66]  Luke J Harmon,et al.  Species diversity is dynamic and unbounded at local and continental scales. , 2015, The American naturalist.

[67]  Jian Zhang,et al.  Evolutionary and ecological causes of species richness patterns in North American angiosperm trees , 2015 .

[68]  N. Heim,et al.  Cope’s rule in the evolution of marine animals , 2015, Science.

[69]  Nathan J B Kraft,et al.  Plant functional traits and the multidimensional nature of species coexistence , 2015, Proceedings of the National Academy of Sciences.

[70]  D. Rabosky,et al.  Model inadequacy and mistaken inferences of trait-dependent speciation. , 2014, Systematic biology.

[71]  R. FitzJohn,et al.  The unsolved challenge to phylogenetic correlation tests for categorical characters. , 2015, Systematic biology.

[72]  S. Otto,et al.  Specialization and generalization in the diversification of phytophagous insects: tests of the musical chairs and oscillation hypotheses , 2014, Proceedings of the Royal Society B: Biological Sciences.

[73]  A. Agrawal,et al.  Defense mutualisms enhance plant diversification , 2014, Proceedings of the National Academy of Sciences.

[74]  K. Gaston,et al.  Biogeography of time partitioning in mammals , 2014, Proceedings of the National Academy of Sciences.

[75]  Jens Kattge,et al.  The emergence and promise of functional biogeography , 2014, Proceedings of the National Academy of Sciences.

[76]  A. Kerkhoff,et al.  The latitudinal species richness gradient in New World woody angiosperms is consistent with the tropical conservatism hypothesis , 2014, Proceedings of the National Academy of Sciences.

[77]  H. Morlon Phylogenetic approaches for studying diversification. , 2014, Ecology letters.

[78]  L. Revell ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS , 2014, Evolution; international journal of organic evolution.

[79]  Shinichi Nakagawa,et al.  What determines species richness of parasitic organisms? A meta‐analysis across animal, plant and fungal hosts , 2014, Biological reviews of the Cambridge Philosophical Society.

[80]  David C. Tank,et al.  Three keys to the radiation of angiosperms into freezing environments , 2013, Nature.

[81]  James H. Brown Why are there so many species in the tropics? , 2013, Journal of biogeography.

[82]  Michael J. Landis,et al.  Bayesian analysis of biogeography when the number of areas is large. , 2013, Systematic biology.

[83]  Juan M. Guayasamin,et al.  Explaining Andean megadiversity: the evolutionary and ecological causes of glassfrog elevational richness patterns. , 2013, Ecology letters.

[84]  M. Donoghue,et al.  Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms. , 2013, Systematic biology.

[85]  R. Jansson,et al.  WHAT CAN MULTIPLE PHYLOGENIES SAY ABOUT THE LATITUDINAL DIVERSITY GRADIENT? A NEW LOOK AT THE TROPICAL CONSERVATISM, OUT OF THE TROPICS, AND DIVERSIFICATION RATE HYPOTHESES , 2013, Evolution; international journal of organic evolution.

[86]  P. Midford,et al.  Exploring power and parameter estimation of the BiSSE method for analyzing species diversification , 2013, BMC Evolutionary Biology.

[87]  R. FitzJohn Diversitree: comparative phylogenetic analyses of diversification in R , 2012 .

[88]  J. HilleRisLambers,et al.  Rethinking Community Assembly through the Lens of Coexistence Theory , 2012 .

[89]  W. Jetz,et al.  The global diversity of birds in space and time , 2012, Nature.

[90]  S. Naeem,et al.  The Functions of Biological Diversity in an Age of Extinction , 2012, Science.

[91]  Travis Ingram,et al.  Stability and persistence of food webs with omnivory: Is there a general pattern? , 2012 .

[92]  S. Price,et al.  Tempo of trophic evolution and its impact on mammalian diversification , 2012, Proceedings of the National Academy of Sciences.

[93]  N. Patrik What is ecological speciation , 2012 .

[94]  T. Barraclough,et al.  Different Diversification Rates Between Sexual and Asexual Organisms , 2012, Evolutionary Biology.

[95]  D. Tilman Diversification, Biotic Interchange, and the Universal Trade-Off Hypothesis , 2011, The American Naturalist.

[96]  Richard G FitzJohn,et al.  Quantitative traits and diversification. , 2010, Systematic biology.

[97]  R. Glor Phylogenetic Insights on Adaptive Radiation , 2010 .

[98]  W. Godsoe,et al.  Ecological opportunity and the origin of adaptive radiations , 2010, Journal of evolutionary biology.

[99]  Brian J McGill,et al.  How do traits vary across ecological scales? A case for trait-based ecology. , 2010, Ecology letters.

[100]  Daniel L Rabosky,et al.  EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES , 2010, Evolution; international journal of organic evolution.

[101]  Richard H. Ree,et al.  Correlated evolution of mating system and floral display traits in flowering plants and its implications for the distribution of mating system variation. , 2010, The New phytologist.

[102]  T. Garland,et al.  Phylogenetic logistic regression for binary dependent variables. , 2010, Systematic biology.

[103]  Richard G FitzJohn,et al.  Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. , 2009, Systematic biology.

[104]  Richard H. Ree,et al.  Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. , 2008, Systematic biology.

[105]  Peter E Midford,et al.  Estimating a binary character's effect on speciation and extinction. , 2007, Systematic biology.

[106]  W. Duellman,et al.  LOSS AND RE-EVOLUTION OF COMPLEX LIFE CYCLES IN MARSUPIAL FROGS: DOES ANCESTRAL TRAIT RECONSTRUCTION MISLEAD? , 2007, Evolution; international journal of organic evolution.

[107]  Nancy Knowlton,et al.  Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. , 2007, Ecology letters.

[108]  Mark A McPeek,et al.  Clade Age and Not Diversification Rate Explains Species Richness among Animal Taxa , 2007, The American Naturalist.

[109]  Ole Seehausen,et al.  African cichlid fish: a model system in adaptive radiation research , 2006, Proceedings of the Royal Society B: Biological Sciences.

[110]  R. Ricklefs Evolutionary diversification and the origin of the diversity-environment relationship. , 2006, Ecology.

[111]  B. Enquist,et al.  Rebuilding community ecology from functional traits. , 2006, Trends in ecology & evolution.

[112]  F. Chapin,et al.  EFFECTS OF BIODIVERSITY ON ECOSYSTEM FUNCTIONING: A CONSENSUS OF CURRENT KNOWLEDGE , 2005 .

[113]  M. Pagel,et al.  Bayesian estimation of ancestral character states on phylogenies. , 2004, Systematic biology.

[114]  M. Sanderson,et al.  The Significance of Few Versus Many in the Tree of Life , 2004, Science.

[115]  Helmut Hillebrand,et al.  On the Generality of the Latitudinal Diversity Gradient , 2004, The American Naturalist.

[116]  Jonathan P. Bollback,et al.  Stochastic mapping of morphological characters. , 2003, Systematic biology.

[117]  P. Stephens,et al.  Explaining Species Richness from Continents to Communities: The Time‐for‐Speciation Effect in Emydid Turtles , 2002, The American Naturalist.

[118]  Jan Kozłowski,et al.  Why are species’ body size distributions usually skewed to the right? , 2002 .

[119]  S. Otto,et al.  Evolution of sex: Resolving the paradox of sex and recombination , 2002, Nature Reviews Genetics.

[120]  J. P. Grime,et al.  Biodiversity and Ecosystem Functioning: Current Knowledge and Future Challenges , 2001, Science.

[121]  Serge Morand,et al.  The Diversity of Parasites , 2000, The Quarterly Review of Biology.

[122]  Jonathan M. Levine,et al.  Elton revisited: a review of evidence linking diversity and invasibility , 1999 .

[123]  Todd H. Oakley,et al.  Reconstructing ancestral character states: a critical reappraisal. , 1998, Trends in ecology & evolution.

[124]  D. Schluter,et al.  LIKELIHOOD OF ANCESTOR STATES IN ADAPTIVE RADIATION , 1997, Evolution; international journal of organic evolution.

[125]  Kate E. Jones,et al.  An optimum body size for mammals? Comparative evidence from bats , 1997 .

[126]  P. Reich,et al.  The Influence of Functional Diversity and Composition on Ecosystem Processes , 1997 .

[127]  D. Jablonski Body-size evolution in Cretaceous molluscs and the status of Cope's rule , 1997, Nature.

[128]  K. Gaston,et al.  The distribution of body sizes of the world's bird species , 1994 .

[129]  M. Pagel Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[130]  James H. Brown,et al.  THE MICRO AND MACRO IN BODY SIZE EVOLUTION , 1992, Evolution; international journal of organic evolution.

[131]  James H. Brown,et al.  Macroecology: The Division of Food and Space Among Species on Continents , 1989, Science.

[132]  James H. Brown,et al.  Distribution of Energy Use and Biomass Among Species of North American Terrestrial Birds , 1988 .

[133]  R. Ricklefs,et al.  Community Diversity: Relative Roles of Local and Regional Processes , 1987, Science.

[134]  J. Terborgh,et al.  Saturation of Bird Communities in the West Indies , 1980, The American Naturalist.

[135]  E. Pianka Latitudinal Gradients in Species Diversity: A Review of Concepts , 1966, The American Naturalist.

[136]  P. Raven,et al.  BUTTERFLIES AND PLANTS: A STUDY IN COEVOLUTION , 1964 .

[137]  R. Macarthur,et al.  AN EQUILIBRIUM THEORY OF INSULAR ZOOGEOGRAPHY , 1963 .

[138]  G. E. Hutchinson,et al.  A Theoretical Ecological Model of Size Distributions Among Species of Animals , 1959, The American Naturalist.