Integration of molecular cytogenetics, dated molecular phylogeny, and model-based predictions to understand the extreme chromosome reorganization in the Neotropical genus Tonatia (Chiroptera: Phyllostomidae)

[1]  M. Kirkpatrick,et al.  Chromosome Inversions, Local Adaptation and Speciation , 2017, Genetics.

[2]  Fengtang Yang,et al.  Phylogenetic Reconstruction by Cross-Species Chromosome Painting and G-Banding in Four Species of Phyllostomini Tribe (Chiroptera, Phyllostomidae) in the Brazilian Amazon: An Independent Evidence for Monophyly , 2015, PloS one.

[3]  A. Kudryavtseva,et al.  Hot spots of DNA double-strand breaks and genomic contacts of human rDNA units are involved in epigenetic regulation , 2014, Journal of molecular cell biology.

[4]  J. Haber,et al.  Chromosome rearrangements via template switching between diverged repeated sequences , 2014, Genes & development.

[5]  M. Kirkpatrick,et al.  LOCAL ADAPTATION AND THE EVOLUTION OF CHROMOSOME FUSIONS , 2014, Evolution; international journal of organic evolution.

[6]  August E. Woerner,et al.  Gibbon genome and the fast karyotype evolution of small apes , 2014 .

[7]  Sergio Solari,et al.  Cambios recientes en la sistemática y taxonomía de murciélagos Neotropicales (Mammalia: Chiroptera) , 2014 .

[8]  Dong Xie,et al.  BEAST 2: A Software Platform for Bayesian Evolutionary Analysis , 2014, PLoS Comput. Biol..

[9]  R. Baker,et al.  Timeframes of speciation, reticulation, and hybridization in the bulldog bat explained through phylogenetic analyses of all genetic transmission elements. , 2014, Systematic biology.

[10]  Fengtang Yang,et al.  Chromosomal evolution among leaf-nosed nectarivorous bats – evidence from cross-species chromosome painting (Phyllostomidae, Chiroptera) , 2013, BMC Evolutionary Biology.

[11]  Fengtang Yang,et al.  Two new cytotypes reinforce that Micronycteris hirsuta Peters, 1869 does not represent a monotypic taxon , 2013, BMC Genetics.

[12]  L. Santini,et al.  Generation length for mammals , 2013 .

[13]  T. Petes,et al.  Genome rearrangements caused by interstitial telomeric sequences in yeast , 2013, Proceedings of the National Academy of Sciences.

[14]  M. Ferguson-Smith,et al.  A phylogenetic analysis using multidirectional chromosome painting of three species (Uroderma magnirostrum, U. bilobatum and Artibeus obscurus) of subfamily Stenodermatinae (Chiroptera-Phyllostomidae) , 2013, Chromosome Research.

[15]  A. Paço,et al.  The involvement of repetitive sequences in the remodelling of karyotypes: the Phodopus genomes (Rodentia, Cricetidae). , 2013, Micron.

[16]  M. Ferguson-Smith,et al.  Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes) , 2013, PloS one.

[17]  Paul A. Smith,et al.  Records of the Phyllostomine bats Tonatia bidens (Spix, 1823) and Lophostoma silvicolum d´Orbigny, 1836 (Chiroptera, Phyllostomidae) associated with human dwellings in Paraguay , 2013 .

[18]  Christopher W. Whelan,et al.  A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons , 2012, Genome research.

[19]  J. C. Pieczarka,et al.  Karyotypic variation in Rhinophylla pumilio Peters, 1865 and comparative analysis with representatives of two subfamilies of Phyllostomidae (Chiroptera) , 2012, Comparative cytogenetics.

[20]  Miriam K. Konkel,et al.  Centromere Remodeling in Hoolock leuconedys (Hylobatidae) by a New Transposable Element Unique to the Gibbons , 2012, Genome biology and evolution.

[21]  D. Ray,et al.  Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats , 2012, Genome biology and evolution.

[22]  R. Baker,et al.  Evolutionary History of Bats: Molecular time scale of diversification of feeding strategy and morphology in New World Leaf-Nosed Bats (Phyllostomidae): a phylogenetic perspective , 2012 .

[23]  Gregg F. Gunnell,et al.  Evolutionary History of Bats: Fossils, Molecules and Morphology , 2012 .

[24]  T. J. Robinson,et al.  Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification , 2011, Science.

[25]  Antonio Sánchez,et al.  Rapid, independent, and extensive amplification of telomeric repeats in pericentromeric regions in karyotypes of arvicoline rodents , 2011, Chromosome Research.

[26]  P. Velazco,et al.  On the identity of Lophostoma silvicolum occidentalis (Davis & Carter, 1978) (Chiroptera: Phyllostomidae) , 2011 .

[27]  M. Ferguson-Smith,et al.  Chromosomal Homologies among Vampire Bats Revealed by Chromosome Painting (Phyllostomidae, Chiroptera) , 2010, Cytogenetic and Genome Research.

[28]  R. Faria,et al.  Chromosomal speciation revisited: rearranging theory with pieces of evidence. , 2010, Trends in ecology & evolution.

[29]  R. Baker,et al.  TIMESCALE OF DIVERSIFICATION OF FEEDING STRATEGY AND MORPHOLOGY IN NEW WORLD LEAF-NOSED BATS ( PHYLLOSTOMIDAE ) : A PHYLOGENETIC PERSPECTIVE , 2010 .

[30]  N. Santos,et al.  Comparative cytogenetic analysis between Lonchorhina aurita and Trachops cirrhosus (Chiroptera, Phyllostomidae) , 2009, Genetics and molecular biology.

[31]  J. Miller,et al.  Pig genome analysis: differential distribution of SINE and LINE sequences is less pronounced than in the human and mouse genomes , 2009, Mammalian Genome.

[32]  R. Baker,et al.  Molecular dating of the diversification of Phyllostominae bats based on nuclear and mitochondrial DNA sequences. , 2008, Molecular phylogenetics and evolution.

[33]  I. Grummt,et al.  The epigenetics of rRNA genes: from molecular to chromosome biology. , 2008, Annual review of cell and developmental biology.

[34]  M. Bullejos,et al.  Retroelements (LINEs and SINEs) in vole genomes: Differential distribution in the constitutive heterochromatin , 2008, Chromosome Research.

[35]  P. Mieczkowski,et al.  Double-strand breaks associated with repetitive DNA can reshape the genome , 2008, Proceedings of the National Academy of Sciences.

[36]  Tanja Gernhard,et al.  The conditioned reconstructed process. , 2008, Journal of theoretical biology.

[37]  H. Wichman,et al.  Loss of LINE-1 Activity in the Megabats , 2008, Genetics.

[38]  B. Chowdhary,et al.  FISH for mapping single copy genes. , 2008, Methods in molecular biology.

[39]  Elaine R Mardis,et al.  Molecular refinement of gibbon genome rearrangements. , 2007, Genome research.

[40]  Y. Matsuda,et al.  X accumulation of LINE-1 retrotransposons in Tokudaia osimensis, a spiny rat with the karyotype XO , 2006, Cytogenetic and Genome Research.

[41]  Robert J. Baker,et al.  Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes , 1990, Chromosoma.

[42]  M. Ferguson-Smith,et al.  Reciprocal chromosome painting between two South American bats: Carollia brevicauda and Phyllostomus hastatus (Phyllostomidae, Chiroptera) , 2005, Chromosome Research.

[43]  K. Strimmer,et al.  TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics , 2004, BMC Evolutionary Biology.

[44]  C. E. L. Esbérard,et al.  Aspectos sobre a biologia de Tonatia bidens (Spix) no estado do Rio de Janeiro, sudeste do Brasil (Mammalia, Chiroptera, Phyllostomidae) , 2004 .

[45]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[46]  J. C. Pieczarka,et al.  Meiotic analyses of the sex chromosomes in Carolliinae-Phyllostomidae (Chiroptera): NOR separates the XY1Y2 into two independent parts , 2004 .

[47]  L. Rieseberg,et al.  Chromosomal evolution and speciation: a recombination-based approach. , 2003, The New phytologist.

[48]  N. Carter,et al.  A comparative study of karyotypes of muntjacs by chromosome painting , 1995, Chromosoma.

[49]  L. Manuelidis,et al.  SINEs and LINEs cluster in distinct DNA fragments of Giemsa band size , 1989, Chromosoma.

[50]  R. Baker.  New bat of the genus Lophostoma (Phyllostomidae: Phyllostominae) from northwestern Ecuador / , 2004 .

[51]  H. Hameister,et al.  A comparative ZOO-FISH analysis in bats elucidates the phylogenetic relationships between Megachiroptera and five microchiropteran families , 2004, Chromosome Research.

[52]  R. Baker,et al.  Transposable elements and the evolution of genome organization in mammals , 2004, Genetica.

[53]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[54]  E. Eichler,et al.  Structural Dynamics of Eukaryotic Chromosome Evolution , 2003, Science.

[55]  M. Fenton,et al.  Bat Mobility and Roosts in a Fragmented Landscape in Central Amazonia, Brazil , 2003 .

[56]  J. C. Pieczarka,et al.  Cytogenetic analysis in species of the Subfamily Glossophaginae (Phyllostomidae, Chiroptera) supports a polyphyletic origin , 2003 .

[57]  R. Baker,et al.  Preparations of mammalian karyotypes under field conditions , 2003 .

[58]  R. Baker,et al.  Diversification among New World leaf-nosed bats : an evolutionary hypothesis and classification inferred from digenomic congruence of DNA sequence / , 2003 .

[59]  R. Baker,et al.  Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: implications for X-chromosome inactivation , 2002, Cytogenetic and Genome Research.

[60]  Y. Yonenaga-Yassuda,et al.  Localization of rRNA genes in Phyllostomidae bats reveals silent NORs in Artibeus cinereus. , 2002, Hereditas.

[61]  R. A. Van Den Bussche,et al.  MOLECULAR PHYLOGENETICS AND TAXONOMIC REVISION OF THE GENUS TONATIA (CHIROPTERA: PHYLLOSTOMIDAE) , 2002 .

[62]  Y. Yonenaga-Yassuda,et al.  Comparative karyology of Brazilian vampire bats Desmodus rotundus and Diphylla ecaudata (Phyllostomidae, Chiroptera): banding patterns, base-specific fluorochromes and FISH of ribosomal genes. , 2004, Hereditas.

[63]  L H. Rieseberg,et al.  Chromosomal rearrangements and speciation. , 2001, Trends in ecology & evolution.

[64]  J. Huelsenbeck,et al.  MRBAYES : Bayesian inference of phylogeny , 2001 .

[65]  H. Wichman,et al.  Isolation of markers from recently transposed LINE-1 retrotransposons. , 2000, BioTechniques.

[66]  David Waddington,et al.  The dynamics of chromosome evolution in birds and mammals , 1999, Nature.

[67]  J. Jurka,et al.  L1 repeat is a basic unit of heterochromatin satellites in cetaceans. , 1998, Molecular biology and evolution.

[68]  S. Gimenez,et al.  Site-specific retrotransposition of L1 elements within human alphoid satellite sequences. , 1997, Genomics.

[69]  E. Buckler,et al.  The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. , 1997, Genetics.

[70]  M. King.  Species Evolution: The Role of Chromosome Change , 1993 .

[71]  C. Lin,et al.  Interstitial localization of telomeric DNA sequences in the Indian muntjac chromosomes: further evidence for tandem chromosome fusions in the karyotypic evolution of the Asian muntjacs. , 1993, Cytogenetics and cell genetics.

[72]  O. Ryder,et al.  Genomic distribution of heterochromatic sequences in equids: implications to rapid chromosomal evolution. , 1991, The Journal of heredity.

[73]  D C Ward,et al.  Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[74]  R. Baker,et al.  ON FACTORS AFFECTING THE FIXATION OF CHROMOSOMAL REARRANGEMENTS AND NEUTRAL GENES: COMPUTER SIMULATIONS , 1986, Evolution; international journal of organic evolution.

[75]  J. Felsenstein.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[76]  R. Baker,et al.  Karyotypic Evolution in Bats: Evidence of Extensive and Conservative Chromosomal Evolution in Closely Related Taxa , 1980 .

[77]  R. Baker,et al.  Evolutionary Relationship of the Brachyphyllinae to the Glossophagine Genera Glossophaga and Monophyllus , 1979 .

[78]  R. Lande.  EFFECTIVE DEME SIZES DURING LONG‐TERM EVOLUTION ESTIMATED FROM RATES OF CHROMOSOMAL REARRANGEMENT , 1979, Evolution; international journal of organic evolution.

[79]  N. Sugiura.  Further analysts of the data by akaike' s information criterion and the finite corrections , 1978 .

[80]  A. L. Gardner.  The Distributional Status Of Some Peruvian Mammals , 1976, Occasional Papers of the Museum of Natural Science, Louisiana State University.

[81]  G. F. Meenaghan,et al.  Biology of bats of the New World family Phyllostomatidae , 1976 .

[82]  H. Akaike.  A new look at the statistical model identification , 1974 .

[83]  M. Seabright.  A rapid banding technique for human chromosomes. , 1971, Lancet.

[84]  J. Watts,et al.  Respiratory distress syndrome and continuous positive airway pressure. , 1971, Lancet.

[85]  M. White,et al.  Animal cytology and evolution. , 1955 .

[86]  C. Waddington,et al.  “Animal Cytology and Evolution” , 1955, Nature.

[87]  Sewall Wright,et al.  On the Probability of Fixation of Reciprocal Translocations , 1941, The American Naturalist.

[88]  W. Illiam,et al.  OCCASIONAL PAPERS OF THE MUSEUM OF ZOOLOGY , 2007 .