Analysis of the bacterial response to Ru(CO)3Cl(Glycinate) (CORM-3) and the inactivated compound identifies the role played by the ruthenium compound and reveals sulfur-containing species as a major target of CORM-3 action.

AIMS Carbon monoxide (CO)-releasing molecules (CO-RMs) are being developed with the ultimate goal of safely utilizing the therapeutic potential of CO clinically. One such application is antimicrobial activity; therefore, we aimed to characterize and compare the effects of the CO-RM, CORM-3, and its inactivated counterpart, where all labile CO has been removed, at the transcriptomic and cellular level. RESULTS We found that both compounds are able to penetrate the cell, but the inactive form is not inhibitory to bacterial growth under conditions where CORM-3 is. Transcriptomic analyses revealed that the bacterial response to inactivated CORM-3 (iCORM-3) is much lower than to the active compound and that a wide range of processes appear to be affected by CORM-3 and to a lesser extent iCORM-3, including energy metabolism, membrane transport, motility, and the metabolism of many sulfur-containing species, including cysteine and methionine. INNOVATION This work has demonstrated that both CORM-3 and its inactivated counterpart react with cellular functions to yield a complex response at the transcriptomic level. A full understanding of the actions of both compounds is vital to understand the toxic effects of CO-RMs. CONCLUSION This work has furthered our understanding of how CORM-3 behaves at the cellular level and identifies the responses that occur when the host is exposed to the Ru compound as well as those that result from the released CO. This is a vital step in laying the groundwork for future development of optimized CO-RMs for eventual use in antimicrobial therapy.

[1]  Neil D. Lawrence,et al.  TFInfer: a tool for probabilistic inference of transcription factor activities , 2010, Bioinform..

[2]  R. Foresti,et al.  Treatment with CO-RMs during cold storage improves renal function at reperfusion. , 2006, Kidney international.

[3]  L. M. Saraiva,et al.  A role for reactive oxygen species in the antibacterial properties of carbon monoxide-releasing molecules. , 2012, FEMS microbiology letters.

[4]  Guido Sanguinetti,et al.  Carbon Monoxide-releasing Antibacterial Molecules Target Respiration and Global Transcriptional Regulators* , 2009, Journal of Biological Chemistry.

[5]  Masaru Tomita,et al.  Update on the Keio collection of Escherichia coli single-gene deletion mutants , 2009, Molecular systems biology.

[6]  E. Denamur,et al.  Differential antibacterial activity against Pseudomonas aeruginosa by carbon monoxide-releasing molecules. , 2012, Antioxidants & redox signaling.

[7]  D. Postma,et al.  Anti-inflammatory effects of inhaled carbon monoxide in patients with COPD: a pilot study , 2007, European Respiratory Journal.

[8]  D. Tempest,et al.  Chapter XIII The Continuous Cultivation of Micro-organisms: 2. Construction of a Chemostat , 1970 .

[9]  Neil D. Lawrence,et al.  Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities , 2006, Bioinform..

[10]  S. Létoffé,et al.  The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins , 2006, Proceedings of the National Academy of Sciences.

[11]  P. Sarathchandra,et al.  Carbon Monoxide-Releasing Molecules: Characterization of Biochemical and Vascular Activities , 2002, Circulation research.

[12]  E. Denamur,et al.  A carbon monoxide‐releasing molecule (CORM‐3) exerts bactericidal activity against Pseudomonas aeruginosa and improves survival in an animal model of bacteraemia , 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[13]  T. Raivio,et al.  A third envelope stress signal transduction pathway in Escherichia coli , 2002, Molecular microbiology.

[14]  G. Ellman,et al.  Tissue sulfhydryl groups. , 1959, Archives of biochemistry and biophysics.

[15]  E. Lennox,et al.  Transduction of linked genetic characters of the host by bacteriophage P1. , 1955, Virology.

[16]  F. Fang,et al.  Genetic and redox determinants of nitric oxide cytotoxicity in a Salmonella typhimurium model. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[17]  G. Giordano,et al.  Mandrand-berthelot Dehydrogenase. Physiological Role for Aerobic Formate Escherichia Coli Fdo Locus and a Possible Expression and Characterization of The , 1995 .

[18]  Ana C. Coelho,et al.  New insights into the chemistry of fac-[Ru(CO)₃]²⁺ fragments in biologically relevant conditions: the CO releasing activity of [Ru(CO)₃Cl₂(1,3-thiazole)], and the X-ray crystal structure of its adduct with lysozyme. , 2012, Journal of inorganic biochemistry.

[19]  U. Schatzschneider PhotoCORMs: Light-triggered release of carbon monoxide from the coordination sphere of transition metal complexes for biological applications , 2011 .

[20]  J. Poderoso,et al.  CO-metal interaction: Vital signaling from a lethal gas. , 2006, Trends in biochemical sciences.

[21]  Alison I. Graham,et al.  Severe Zinc Depletion of Escherichia coli , 2009, The Journal of Biological Chemistry.

[22]  C. Yanofsky,et al.  Transduction and recombination study of linkage relationships among the genes controlling tryptophan synthesis in Escherichia coli. , 1959, Virology.

[23]  Guido Sanguinetti,et al.  Compensations for Diminished Terminal Oxidase Activity in Escherichia coli , 2010, The Journal of Biological Chemistry.

[24]  K. Hellingwerf,et al.  Quantitative Assessment of Oxygen Availability: Perceived Aerobiosis and Its Effect on Flux Distribution in the Respiratory Chain of Escherichia coli , 2002, Journal of bacteriology.

[25]  H. Mori,et al.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.

[26]  P. Naughton,et al.  Cardioprotective Actions by a Water‐Soluble Carbon nMonoxide‐Releasing Molecule , 2003, Circulation research.

[27]  J. Liao,et al.  Determination of the Escherichia coli S-Nitrosoglutathione Response Network Using Integrated Biochemical and Systems Analysis* , 2008, Journal of Biological Chemistry.

[28]  Susan Goldhor,et al.  The History of Cell Respiration and Cytochrome , 1966, The Yale Journal of Biology and Medicine.

[29]  Steven T Pullan,et al.  Transcriptional Responses of Escherichia coli to S-Nitrosoglutathione under Defined Chemostat Conditions Reveal Major Changes in Methionine Biosynthesis* , 2005, Journal of Biological Chemistry.

[30]  S. Amslinger,et al.  Acyloxybutadiene iron tricarbonyl complexes as enzyme-triggered CO-releasing molecules (ET-CORMs). , 2011, Angewandte Chemie.

[31]  R. Poole,et al.  The diversity of microbial responses to nitric oxide and agents of nitrosative stress close cousins but not identical twins. , 2011, Advances in microbial physiology.

[32]  R. Foresti,et al.  Vasoactive properties of CORM‐3, a novel water‐soluble carbon monoxide‐releasing molecule , 2004, British journal of pharmacology.

[33]  R. Poole,et al.  Nitric Oxide Homeostasis in Salmonella typhimurium , 2008, Journal of Biological Chemistry.

[34]  A. Moir,et al.  Cysteine Is Exported from the Escherichia coliCytoplasm by CydDC, an ATP-binding Cassette-type Transporter Required for Cytochrome Assembly* , 2002, The Journal of Biological Chemistry.

[35]  Guido Sanguinetti,et al.  Dynamics of a starvation-to-surfeit shift: a transcriptomic and modelling analysis of the bacterial response to zinc reveals transient behaviour of the Fur and SoxS regulators. , 2012, Microbiology.

[36]  R. Poole,et al.  Carbon monoxide in biology and microbiology: surprising roles for the "Detroit perfume". , 2009, Advances in microbial physiology.

[37]  Gonçalo J. L. Bernardes,et al.  CORM-3 reactivity toward proteins: the crystal structure of a Ru(II) dicarbonyl-lysozyme complex. , 2011, Journal of the American Chemical Society.

[38]  L. M. Saraiva,et al.  Antimicrobial Action of Carbon Monoxide-Releasing Compounds , 2007, Antimicrobial Agents and Chemotherapy.

[39]  M. Teixeira,et al.  Reactive Oxygen Species Mediate Bactericidal Killing Elicited by Carbon Monoxide-releasing Molecules* , 2011, The Journal of Biological Chemistry.

[40]  S. Amslinger,et al.  Corrigendum: Acyloxybutadiene Iron Tricarbonyl Complexes as Enzyme‐Triggered CO‐Releasing Molecules (ET‐CORMs) , 2011 .

[41]  B. Mann Carbon Monoxide: An Essential Signalling Molecule , 2010 .

[42]  R. Poole,et al.  Sulfite species enhance carbon monoxide release from CO-releasing molecules: implications for the deoxymyoglobin assay of activity. , 2012, Analytical biochemistry.

[43]  H. Adams,et al.  Metal carbonyls as pharmaceuticals? [Ru(CO)3Cl(glycinate)], a CO-releasing molecule with an extensive aqueous solution chemistry. , 2007, Dalton transactions.