Subspace Vector Quantization and Markov Modeling for Cell Phase Classification

Vector quantization (VQ) and Markov modeling methods for cellular phase classification using time-lapse fluorescence microscopic image sequences have been proposed in our previous work. However the VQ method is not always effective because cell features are treated equally although their importance may not be the same. We propose a subspace VQ method to overcome this drawback. The proposed method can automatically weight cell features based on their importance in modeling. Two weighting algorithms based on fuzzy c-means and fuzzy entropy clustering are proposed. Experimental results show that the proposed method can improve the cell phase classification rates.

[1]  Stephen T. C. Wong,et al.  Modeling methods for cell phase classification , 2007 .

[2]  T. Mitchison,et al.  Phenotypic screening of small molecule libraries by high throughput cell imaging. , 2003, Combinatorial chemistry & high throughput screening.

[3]  Stephen T. C. Wong,et al.  TIME-LAPSE CELL CYCLE QUANTITATIVE DATA ANALYSIS USING GAUSSIAN MIXTURE MODELS , 2006 .

[4]  D. Murphy Fundamentals of Light Microscopy and Electronic Imaging , 2001 .

[5]  Michael K. Ng,et al.  Automated variable weighting in k-means type clustering , 2005, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[6]  Richard O. Duda,et al.  Pattern classification and scene analysis , 1974, A Wiley-Interscience publication.

[7]  Xiaobo Zhou,et al.  Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy , 2006, IEEE Transactions on Biomedical Engineering.

[8]  Chung-Sheng Li,et al.  Life Science Data Mining , 2006 .

[9]  Yasushi Hiraoka,et al.  Fluorescence imaging of mammalian living cells , 1996, Chromosome Research.

[10]  Marco Loog,et al.  Pixel position regression - application to medical image segmentation , 2004, ICPR 2004.

[11]  Hong Yan,et al.  Advanced Computational Methods for Biocomputing And Bioimaging , 2006 .

[12]  Kuldip K. Paliwal,et al.  Application of k-Nearest-Neighbor Decision Rule in Vowel Recognition , 1983, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[13]  Xiaobo Zhou,et al.  Classification of cell phases in time-lapse images by vector quantization and markov models , 2006 .

[14]  Juho Pitkänen,et al.  Point accuracy of a non-parametric method in estimation of forest characteristics with different satellite materials , 1996 .

[15]  Yongmin Kim,et al.  Special Issue on Molecular Imaging: Emerging Technology and Biomedical Applications , 2005, Proc. IEEE.

[16]  Russ B. Altman,et al.  Missing value estimation methods for DNA microarrays , 2001, Bioinform..

[17]  T. Kanda,et al.  Histone–GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells , 1998, Current Biology.

[18]  D. Tran,et al.  Fuzzy entropy clustering , 2000, Ninth IEEE International Conference on Fuzzy Systems. FUZZ- IEEE 2000 (Cat. No.00CH37063).