A systematic review on literature-based discovery workflow
暂无分享,去创建一个
Katrina E. Falkner | Thushari Atapattu | Menasha Thilakaratne | K. Falkner | Thushari Atapattu | M. Thilakaratne
[1] Jonathan D. Wren,et al. Extending the mutual information measure to rank inferred literature relationships , 2004, BMC Bioinformatics.
[2] Steven B. Kraines,et al. Discovering Relationship Associations in Life Sciences using Ontology and Inference , 2009, KDIR.
[3] Peter J. Haas,et al. Automated hypothesis generation based on mining scientific literature , 2014, KDD.
[4] Ronald N. Kostoff,et al. Literature-related discovery (LRD): Methodology , 2008 .
[5] Akiko Aizawa,et al. An information-theoretic perspective of tf-idf measures , 2003, Inf. Process. Manag..
[6] Saso Dzeroski,et al. Supporting Discovery in Medicine by Association Rule Mining in Medline and UMLS , 2001, MedInfo.
[7] Vijay V. Raghavan,et al. Supervised approach to rank predicted links using interestingness measures , 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
[8] Joyce A. Mitchell,et al. Using literature-based discovery to identify disease candidate genes , 2005, Int. J. Medical Informatics.
[9] Beatriz Sousa Santos,et al. Evaluating Visualization techniques and tools: what are the main issues? , 2007 .
[10] Jinyan Su,et al. Literature-based Multidiscipline Knowledge Discovery: A New Application of Bibliometrics , 2009 .
[11] Steven J. M. Jones,et al. A collaborative filtering-based approach to biomedical knowledge discovery , 2018, Bioinform..
[12] José M. Vicente Gomila,et al. The contribution of syntactic-semantic approach to the search for complementary literatures for scientific or technical discovery , 2014, Scientometrics.
[13] Guillermo Palma,et al. An authority-flow based ranking approach to discover potential novel associations between Linked Data , 2014, Semantic Web.
[14] Lih-Yuan Deng,et al. Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts , 2017, Front. Bioeng. Biotechnol..
[15] H. V. Jagadish,et al. Literature-based discovery of diabetes- and ROS-related targets , 2010, BMC Medical Genomics.
[16] K. Fujita,et al. Finding linkage between technology and social issues: A literature based discovery approach , 2012, 2012 Proceedings of PICMET '12: Technology Management for Emerging Technologies.
[17] Seung Han Beak,et al. Discovering New Genes in the Pathways of Common Sporadic Neurodegenerative Diseases: A Bioinformatics Approach. , 2016, Journal of Alzheimer's disease : JAD.
[18] Maren Duvendack,et al. The benefits and challenges of using systematic reviews in international development research , 2012 .
[19] Padmini Srinivasan,et al. A semantic approach to involve Twitter in LBD efforts , 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.
[20] Mark Stevenson,et al. The Effect of Word Sense Disambiguation Accuracy on Literature Based Discovery , 2015, DTMBIO@CIKM.
[21] Eu-Gene Siew,et al. Emerging approaches in literature-based discovery: techniques and performance review , 2017, The Knowledge Engineering Review.
[22] Jose M. Vicente-Gomila. The contribution of syntactic–semantic approach to the search for complementary literatures for scientific or technical discovery , 2014 .
[23] Diane Kelly,et al. Interactive Information Seeking Behaviour and Retrieval , 2011 .
[24] Krzysztof J. Cios,et al. Discovering relational knowledge from two disjoint sets of literatures using inductive Logic Programming , 2009, 2009 IEEE Symposium on Computational Intelligence and Data Mining.
[25] Laurianne Sitbon,et al. The Efficiency of Corpus-based Distributional Models for Literature-based Discovery on Large Data Sets , 2014, AWC.
[26] Thomas C. Rindflesch,et al. Predicting High-Throughput Screening Results With Scalable Literature-Based Discovery Methods , 2014, CPT: pharmacometrics & systems pharmacology.
[27] Trevor Cohen,et al. Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space , 2009, AMIA.
[28] Hsinchun Chen,et al. Automated criminal link analysis based on domain knowledge , 2007, J. Assoc. Inf. Sci. Technol..
[29] Susan T. Dumais,et al. Using Latent Semantic Indexing for Literature Based Discovery , 1998, J. Am. Soc. Inf. Sci..
[30] Zhou Yang,et al. Research on Non-interactive Literature-Based Knowledge Discovery , 2008, 2008 International Conference on Computer Science and Software Engineering.
[31] K. Welch,et al. Low Brain Magnesium in Migraine , 1989, Headache.
[32] A. Persidis,et al. Systems literature analysis. , 2004, Pharmacogenomics.
[33] Yi Hu,et al. Simulation of Swanson's Literature-Based Discovery: Anandamide Treatment Inhibits Growth of Gastric Cancer Cells In Vitro and In Silico , 2014, PloS one.
[34] Neil R. Smalheiser,et al. Literature-based discovery: Beyond the ABCs , 2012, J. Assoc. Inf. Sci. Technol..
[35] Neil R. Smalheiser,et al. Gaps within the Biomedical Literature: Initial Characterization and Assessment of Strategies for Discovery , 2017, Front. Res. Metr. Anal..
[36] Ronald N. Kostoff,et al. Literature-related discovery (LRD): Potential treatments for Raynaud's Phenomenon☆ , 2008 .
[37] Hua Xu,et al. Literature-Based Discovery of Confounding in Observational Clinical Data , 2016, AMIA.
[38] M. Schuemie,et al. Anni 2.0: a multipurpose text-mining tool for the life sciences , 2008, Genome Biology.
[39] Michael D. Gordon,et al. Toward Discovery Support Systems: A Replication, Re-Examination, and Extension of Swanson's Work on Literature-Based Discovery of a Connection between Raynaud's and Fish Oil , 1996, J. Am. Soc. Inf. Sci..
[40] Neil R. Smalheiser,et al. Ranking indirect connections in literature-based discovery: The role of medical subject headings , 2006, J. Assoc. Inf. Sci. Technol..
[41] Nada Lavrac,et al. Outlier Detection in Cross-Context Link Discovery for Creative Literature Mining , 2012, Comput. J..
[42] Mark Stevenson,et al. Exploring relation types for literature-based discovery , 2015, J. Am. Medical Informatics Assoc..
[43] Michelangelo Ceci,et al. Discovering Temporal Bisociations for Linking Concepts over Time , 2011, ECML/PKDD.
[44] Thomas C. Rindflesch,et al. Link Prediction on a Network of Co-occurring MeSH Terms: Towards Literature-based Discovery , 2016, Methods of Information in Medicine.
[45] Shouyang Wang,et al. Mining Medline for New Possible Relations of Concepts , 2004, CIS.
[46] Peter J. Haas,et al. Predicting Future Scientific Discoveries Based on a Networked Analysis of the Past Literature , 2015, KDD.
[47] Naren Ramakrishnan,et al. Connecting the Dots between PubMed Abstracts , 2012, PloS one.
[48] Yukio Ohsawa,et al. Matrix-like visualization based on topic modeling for discovering connections between disjoint disciplines , 2016, Intell. Decis. Technol..
[49] Peter Davies,et al. Discovering discovery patterns with predication-based Semantic Indexing , 2012, J. Biomed. Informatics.
[50] Frâncila Weidt,et al. Systematic Literature Review in Computer Science - A Practical Guide , 2016 .
[51] Marcelo Fiszman,et al. Graph-based methods for discovery browsing with semantic predications. , 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.
[52] Ronald N. Kostoff,et al. Information content in Medline record fields , 2004, Int. J. Medical Informatics.
[53] Eu-Gene Siew,et al. Predicting Future Links Between Disjoint Research Areas Using Heterogeneous Bibliographic Information Network , 2015, PAKDD.
[54] Sampo Pyysalo,et al. Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approaches , 2018, BMC Bioinformatics.
[55] Huamin Zhang,et al. Cordycepssinensis May Have a Dual Effect on Diabetic Retinopathy , 2015, 2015 7th International Conference on Information Technology in Medicine and Education (ITME).
[56] R. P. van de Riet,et al. Applications of Natural Language to Information Systems: Proceedings of the Second International Workshop June 26-28, 1996, Amsterdam, the Netherlands , 1996 .
[57] Xiaowei Xu,et al. Mining FDA drug labels using an unsupervised learning technique - topic modeling , 2011, BMC Bioinformatics.
[58] Erik M. van Mulligen,et al. Constructing an associative concept space for literature-based discovery , 2004, J. Assoc. Inf. Sci. Technol..
[59] Amit P. Sheth,et al. Context-Driven Automatic Subgraph Creation for Literature-Based Discovery , 2015, J. Biomed. Informatics.
[60] Doheon Lee,et al. MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge , 2009, BMC Bioinformatics.
[61] W. Wasserman,et al. Inferring novel gene-disease associations using Medical Subject Heading Over-representation Profiles , 2012, Genome Medicine.
[62] Sérgio VA Campos,et al. Can the vector space model be used to identify biological entity activities? , 2011, BMC Genomics.
[63] Weiguo Fan,et al. Literature-based discovery on the World Wide Web , 2002, TOIT.
[64] Nathan Kibwami,et al. USING THE LITERATURE BASED DISCOVERY RESEARCH METHOD IN A CONTEXT OF BUILT ENVIRONMENT RESEARCH , 2014 .
[65] Hyunjin Kim,et al. Discovering disease-associated drugs using web crawl data , 2016, SAC.
[66] Neil R. Smalheiser. The Arrowsmith Project: 2005 Status Report , 2005, Discovery Science.
[67] Michael D. Gordon,et al. Literature-based discovery by lexical statistics , 1999 .
[68] Eu-Gene Siew,et al. Learning the heterogeneous bibliographic information network for literature-based discovery , 2017, Knowl. Based Syst..
[69] Xin Guo,et al. Clustering algorithm in literature-based discovery , 2010, 2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery.
[70] T. Rindflesch,et al. A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men. , 2012, Sleep.
[71] S. Pongor,et al. Biomedical hypothesis generation by text mining and gene prioritization. , 2013, Protein and peptide letters.
[72] Jonathan D. Wren,et al. Knowledge discovery by automated identification and ranking of implicit relationships , 2004, Bioinform..
[73] Jung-Hsien Chiang,et al. Literature-based discovery of new candidates for drug repurposing , 2016, Briefings Bioinform..
[74] Tanja Urbancic,et al. Literature mining method RaJoLink for uncovering relations between biomedical concepts , 2009, J. Biomed. Informatics.
[75] Erik M. van Mulligen,et al. Automated extraction of potential migraine biomarkers using a semantic graph , 2017, J. Biomed. Informatics.
[76] D. Swanson. Somatomedin C and Arginine: Implicit Connections between Mutually Isolated Literatures , 2015, Perspectives in biology and medicine.
[77] Fatiha Boubekeur,et al. Information retrieval techniques for knowledge discovery in biomedical literature , 2013, 2013 11th International Symposium on Programming and Systems (ISPS).
[78] Ronald N. Kostoff,et al. Literature-related discovery: Potential treatments and preventatives for SARS , 2011, Technological Forecasting and Social Change.
[79] Alan Christoffels,et al. Dragon exploratory system on hepatitis C virus (DESHCV). , 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[80] Min Song,et al. SemPathFinder: Semantic path analysis for discovering publicly unknown knowledge , 2015, J. Informetrics.
[81] Trevor Cohen,et al. EpiphaNet: An Interactive Tool to Support Biomedical Discoveries , 2010, Journal of biomedical discovery and collaboration.
[82] Nada Lavrač,et al. Outlier based literature exploration for cross-domain linking of Alzheimer's disease and gut microbiota , 2017, Expert Syst. Appl..
[83] Dragomir R. Radev,et al. Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology , 2011, J. Biomed. Semant..
[84] Borut Peterlin,et al. Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation , 2009, BioLINK@ISMB/ECCB.
[86] Concetto Spampinato,et al. Combining literature text mining with microarray data: advances for system biology modeling , 2012, Briefings Bioinform..
[87] Wanda Pratt,et al. Using statistical and knowledge-based approaches for literature-based discovery , 2006, J. Biomed. Informatics.
[88] Dragomir R. Radev,et al. Literature-Based Discovery of IFN-γ and Vaccine-Mediated Gene Interaction Networks , 2010, Journal of biomedicine & biotechnology.
[89] Susan T. Dumais,et al. Using latent semantic indexing for literature based discovery , 1998 .
[90] Aaron Marcus,et al. Seven HCI Grand Challenges , 2019, Int. J. Hum. Comput. Interact..
[91] Roy Davies,et al. The Creation of New Knowledge by Information Retrieval and Classification , 1989, J. Documentation.
[92] Trevor Cohen,et al. Discovery by scent: Discovery browsing system based on the Information Foraging Theory , 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.
[93] Aidong Zhang,et al. Towards self‐learning based hypotheses generation in biomedical text domain , 2018, Bioinform..
[94] Padmini Srinivasan,et al. Text mining: Generating hypotheses from MEDLINE , 2004, J. Assoc. Inf. Sci. Technol..
[95] M. Schuemie,et al. Defining a Reference Set to Support Methodological Research in Drug Safety , 2013, Drug Safety.
[96] Corrado Loglisci,et al. Mining Generalized Association Rules on Biomedical Literature , 2005, IEA/AIE.
[97] Hua Xu,et al. Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature , 2014, AMIA.
[98] Hongbao Cao,et al. Advanced literature analysis in a Big Data world , 2017, Annals of the New York Academy of Sciences.
[99] D. Swanson. Literature-based Resurrection of Neglected Medical Discoveries , 2011, Journal of biomedical discovery and collaboration.
[100] Tejas Shah,et al. LION LBD: a literature-based discovery system for cancer biology , 2018, Bioinform..
[101] Aidong Zhang,et al. A survey on literature based discovery approaches in biomedical domain , 2019, J. Biomed. Informatics.
[102] Neil R. Smalheiser,et al. A feature representation method for biomedical scientific data based on composite text description , 2017 .
[103] Trevor Cohen,et al. Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships , 2016, AMIA.
[104] Na Hong,et al. Structuring the Chinese disjointed literature-based knowledge discovery system: The key technologies to success , 2012, J. Inf. Sci..
[105] Li Wang,et al. ARN: analysis and prediction by adipogenic professional database , 2016, BMC Systems Biology.
[106] Wanda Pratt,et al. A new evaluation methodology for literature-based discovery systems , 2009, J. Biomed. Informatics.
[107] Carol Friedman,et al. Exploiting Semantic Relations for Literature-Based Discovery , 2006, AMIA.
[108] Joyce A. Mitchell,et al. Improving Literature Based Discovery Support by Genetic Knowledge Integration , 2003, MIE.
[109] Javed Mostafa,et al. Discovering implicit associations among critical biological entities , 2009, Int. J. Data Min. Bioinform..
[110] D. Swanson. Migraine and Magnesium: Eleven Neglected Connections , 2015, Perspectives in biology and medicine.
[111] Borut Peterlin,et al. Integration of Data from Omic Studies with the Literature-Based Discovery towards Identification of Novel Treatments for Neovascularization in Diabetic Retinopathy , 2013, BioMed research international.
[112] Hongfang Liu,et al. A new method for prioritizing drug repositioning candidates extracted by literature-based discovery , 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
[113] Thomas C. Rindflesch,et al. Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery , 2014, Discovery Science.
[114] S. Baek,et al. Enriching plausible new hypothesis generation in PubMed , 2017, PloS one.
[115] Wanda Pratt,et al. H.3.3 Information Search and Retrieval , 2022 .
[116] Michael D. Gordon,et al. Toward Discovery Support Systems: A Replication, Re-Examination, and Extension of Swanson's Work on Literature-Based Discovery of a Connection between Raynaud's and Fish Oil , 1996, J. Am. Soc. Inf. Sci..
[117] Johannes Stegmann,et al. Hypothesis generation guided by co-word clustering , 2004, Scientometrics.
[118] William M. Pottenger,et al. Recent Advances in Literature Based Discovery , 2005 .
[119] Aidong Zhang,et al. Generating Medical Hypotheses Based on Evolutionary Medical Concepts , 2017, 2017 IEEE International Conference on Data Mining (ICDM).
[120] Peter Bruza,et al. Towards Operational Abduction from a Cognitive Perspective , 2006, Log. J. IGPL.
[121] D. Swanson. Fish Oil, Raynaud's Syndrome, and Undiscovered Public Knowledge , 2015, Perspectives in biology and medicine.
[122] Margo I. Seltzer,et al. Mining the Web for Medical Hypotheses - A Proof-of-Concept System , 2012, HEALTHINF.
[123] N. Smalheiser,et al. Mammalian Argonaute-DNA binding? , 2014, Biology Direct.
[124] Hongfei Lin,et al. Supervised Learning Based Hypothesis Generation from Biomedical Literature , 2015, BioMed research international.
[125] Gang Wang,et al. New insight into genes in association with asthma: literature‐based mining and network centrality analysis , 2013, Chinese medical journal.
[126] Mark Stevenson,et al. Quantifying and filtering knowledge generated by literature based discovery , 2017, BMC Bioinformatics.
[127] Min Song,et al. Entitymetrics: Measuring the Impact of Entities , 2013, PloS one.
[128] Judita Preiss. Seeking Informativeness in Literature Based Discovery , 2014, BioNLP@ACL.
[129] Neil R. Smalheiser,et al. The Place of Literature-Based Discovery in Contemporary Scientific Practice , 2008 .
[130] Neil R. Smalheiser,et al. A Quantitative Model for Linking Two Disparate Sets of Articles in Medline , 2022 .
[131] Han Zhang,et al. Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury , 2015, J. Biomed. Semant..
[132] Neil R. Smalheiser,et al. Artificial Intelligence An interactive system for finding complementary literatures : a stimulus to scientific discovery , 1995 .
[133] Won Chul Kim,et al. A Bird's-Eye View of Alzheimer's Disease Research: Reflecting Different Perspectives of Indexers, Authors, or Citers in Mapping the Field. , 2015, Journal of Alzheimer's disease : JAD.
[134] Xiaofeng Wang,et al. Mining hidden connections among biomedical concepts from disjoint biomedical literature sets through semantic-based association rule , 2010 .
[135] I. V. Ramakrishnan,et al. Automated Suggestion of Tests for Identifying Likelihood of Adverse Drug Events , 2014 .
[136] D. Ying,et al. Upregulation of Endogenous HMOX1 Expression by a Computer-Designed Artificial Transcription Factor , 2010, Journal of biomedicine & biotechnology.
[137] Bridget T. McInnes,et al. Literature Based Discovery: Models, methods, and trends , 2017, J. Biomed. Informatics.
[138] Yong Hwan Kim,et al. A context-based ABC model for literature-based discovery , 2019, PloS one.
[139] Hongfang Liu,et al. Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates Generated by Literature-Based Discovery , 2016, BCB.
[140] N. Smalheiser. Rediscovering Don Swanson:The Past, Present and Future of Literature-based Discovery , 2017, J. Data Inf. Sci..
[141] Doheon Lee,et al. MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge , 2009, DTMBIO.
[142] Pietro Liò,et al. Improving Literature-Based Discovery with Advanced Text Mining , 2014, CIBB.