Disrupted circadian oscillations in type 2 diabetes are linked to altered rhythmic mitochondrial metabolism in skeletal muscle

Description

[1]  M. Mann,et al.  A Cell-Autonomous Signature of Dysregulated Protein Phosphorylation Underlies Muscle Insulin Resistance in Type 2 Diabetes. , 2020, Cell metabolism.

[2]  E. Tsiani,et al.  Amelioration of High-Insulin-Induced Skeletal Muscle Cell Insulin Resistance by Resveratrol Is Linked to Activation of AMPK and Restoration of GLUT4 Translocation , 2020, Nutrients.

[3]  U. Das,et al.  Molecular Basis of the Beneficial Actions of Resveratrol. , 2020, Archives of medical research.

[4]  O. Shirihai,et al.  The OXPHOS supercomplex assembly factor HIG2A responds to changes in energetic metabolism and cell cycle , 2019, Journal of cellular physiology.

[5]  E. van Cauter,et al.  Association of Self-Reported Sleep and Circadian Measures With Glycemia in Adults With Prediabetes or Recently Diagnosed Untreated Type 2 Diabetes , 2019, Diabetes Care.

[6]  Zizhen Yao,et al.  MYOD1 functions as a clock amplifier as well as a critical co-factor for downstream circadian gene expression in muscle , 2019, eLife.

[7]  F. Baas,et al.  Diurnal rhythms in the white adipose tissue transcriptome are disturbed in obese individuals with type 2 diabetes compared with lean control individuals , 2019, Diabetologia.

[8]  J. Zierath,et al.  Circadian rhythms and exercise — re-setting the clock in metabolic disease , 2019, Nature Reviews Endocrinology.

[9]  H. Reinke,et al.  Crosstalk between metabolism and circadian clocks , 2019, Nature Reviews Molecular Cell Biology.

[10]  J. Manson,et al.  Rotating night shift work and adherence to unhealthy lifestyle in predicting risk of type 2 diabetes: results from two large US cohorts of female nurses , 2018, British Medical Journal.

[11]  K. Nair,et al.  Altered mitochondrial function in insulin-deficient and insulin-resistant states. , 2018, The Journal of clinical investigation.

[12]  V. Pertegato,et al.  Transcriptional programming of lipid and amino acid metabolism by the skeletal muscle circadian clock , 2018, PLoS biology.

[13]  J. Zierath,et al.  AMPK activation negatively regulates GDAP1, which influences metabolic processes and circadian gene expression in skeletal muscle , 2018, Molecular metabolism.

[14]  F. Villarroya,et al.  Mitochondrial DNA and TLR9 drive muscle inflammation upon Opa1 deficiency , 2018, The EMBO journal.

[15]  Steven A. Brown,et al.  Circadian Control of DRP1 Activity Regulates Mitochondrial Dynamics and Bioenergetics. , 2018, Cell metabolism.

[16]  B. Holst,et al.  Hepatic NAD+ levels and NAMPT abundance are unaffected during prolonged high-fat diet consumption in C57BL/6JBomTac mice , 2018, Molecular and Cellular Endocrinology.

[17]  J. Lane,et al.  Night Shift Work, Genetic Risk, and Type 2 Diabetes in the UK Biobank , 2018, Diabetes Care.

[18]  A. Kalsbeek,et al.  Circadian rhythms in mitochondrial respiration , 2018, Journal of molecular endocrinology.

[19]  C. Benedict,et al.  Association between long sleep duration and increased risk of obesity and type 2 diabetes: A review of possible mechanisms. , 2017, Sleep medicine reviews.

[20]  Astrid Gall,et al.  Ensembl 2018 , 2017, Nucleic Acids Res..

[21]  K. Lingappan.  NF-κB in Oxidative Stress. , 2017, Current opinion in toxicology.

[22]  Hyojin Kim,et al.  TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions , 2017, Nucleic Acids Res..

[23]  Henning Hermjakob,et al.  The Reactome pathway knowledgebase , 2013, Nucleic Acids Res..

[24]  S. Kelly,et al.  Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data , 2018, Genome Biology.

[25]  J. Hawley,et al.  Transcriptomic and epigenetic responses to short-term nutrient-exercise stress in humans , 2017, Scientific Reports.

[26]  T. Horvath,et al.  Mitochondrial Dynamics Mediated by Mitofusin 1 Is Required for POMC Neuron Glucose-Sensing and Insulin Release Control. , 2017, Cell metabolism.

[27]  H. Kern,et al.  Age-Associated Loss of OPA1 in Muscle Impacts Muscle Mass, Metabolic Homeostasis, Systemic Inflammation, and Epithelial Senescence , 2017, Cell metabolism.

[28]  M. Palacín,et al.  Mitochondrial Dynamics: Coupling Mitochondrial Fitness with Healthy Aging. , 2017, Trends in molecular medicine.

[29]  J. Bass,et al.  Circadian Clock Interaction with HIF1α Mediates Oxygenic Metabolism and Anaerobic Glycolysis in Skeletal Muscle. , 2017, Cell metabolism.

[30]  G. Asher,et al.  The Circadian Nature of Mitochondrial Biology , 2016, Front. Endocrinol..

[31]  P. Schrauwen,et al.  Skeletal muscle mitochondria as a target to prevent or treat type 2 diabetes mellitus , 2016, Nature Reviews Endocrinology.

[32]  P. Schrauwen,et al.  Synchronized human skeletal myotubes of lean, obese and type 2 diabetic patients maintain circadian oscillation of clock genes , 2016, Scientific Reports.

[33]  S. Schiaffino,et al.  The functional significance of the skeletal muscle clock: lessons from Bmal1 knockout models , 2016, Skeletal Muscle.

[34]  P. Zimmet,et al.  Diabetes mellitus statistics on prevalence and mortality: facts and fallacies , 2016, Nature Reviews Endocrinology.

[35]  M. Aznar,et al.  Ionizing Radiation Potentiates High-Fat Diet–Induced Insulin Resistance and Reprograms Skeletal Muscle and Adipose Progenitor Cells , 2016, Diabetes.

[36]  Pål O. Westermark,et al.  Differential rhythmicity: detecting altered rhythmicity in biological data , 2016, Bioinform..

[37]  F. Scheer,et al.  Demonstration of a day-night rhythm in human skeletal muscle oxidative capacity , 2016, Molecular metabolism.

[38]  Till Roenneberg,et al.  The Circadian Clock and Human Health , 2016, Current Biology.

[39]  K. Esser,et al.  Muscle-specific loss of Bmal1 leads to disrupted tissue glucose metabolism and systemic glucose homeostasis , 2016, Skeletal Muscle.

[40]  Sarah Lück,et al.  Circadian mRNA expression: insights from modeling and transcriptomics , 2015, Cellular and Molecular Life Sciences.

[41]  William B. Mair,et al.  Hepatic Bmal1 Regulates Rhythmic Mitochondrial Dynamics and Promotes Metabolic Fitness. , 2015, Cell metabolism.

[42]  J. Takahashi.  Molecular components of the circadian clock in mammals , 2015, Diabetes, obesity & metabolism.

[43]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[44]  P. Arner,et al.  Omentectomy in addition to gastric bypass surgery and influence on insulin sensitivity: a randomized double blind controlled trial. , 2014, Clinical nutrition.

[45]  M. Maeda,et al.  The Circadian Clock Maintains Cardiac Function by Regulating Mitochondrial Metabolism in Mice , 2014, PloS one.

[46]  Kevin Thurley,et al.  Rhythmic degradation explains and unifies circadian transcriptome and proteome data. , 2014, Cell reports.

[47]  Pål O. Westermark,et al.  Detecting Rhythms in Time Series with RAIN , 2014, Journal of biological rhythms.

[48]  L. Hunyady,et al.  Distribution and apoptotic function of outer membrane proteins depend on mitochondrial fusion. , 2014, Molecular cell.

[49]  E. Rugarli,et al.  The i-AAA protease YME1L and OMA1 cleave OPA1 to balance mitochondrial fusion and fission , 2014, The Journal of cell biology.

[50]  Pierre Baldi,et al.  Muscle insulin sensitivity and glucose metabolism are controlled by the intrinsic muscle clock , 2013, Molecular metabolism.

[51]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[52]  J. Denu,et al.  Circadian Clock NAD+ Cycle Drives Mitochondrial Oxidative Metabolism in Mice , 2013, Science.

[53]  D. Hood,et al.  Endurance training ameliorates the metabolic and performance characteristics of circadian Clock mutant mice. , 2013, Journal of applied physiology.

[54]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[55]  J. Takahashi,et al.  Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals , 2012, Science.

[56]  C. Ling,et al.  Regulation of core clock genes in human islets. , 2012, Metabolism: clinical and experimental.

[57]  Guangchuang Yu,et al.  clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.

[58]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[59]  Daniel R. Salomon,et al.  Strategies for aggregating gene expression data: The collapseRows R function , 2011, BMC Bioinformatics.

[60]  D. Skene,et al.  Rhythmic Diurnal Gene Expression in Human Adipose Tissue From Individuals Who Are Lean, Overweight, and Type 2 Diabetic , 2011, Diabetes.

[61]  M. Zeviani,et al.  Defective mitochondrial adenosine triphosphate production in skeletal muscle from patients with dominant optic atrophy due to OPA1 mutations. , 2011, Archives of neurology.

[62]  Rafael A. Irizarry,et al.  A framework for oligonucleotide microarray preprocessing , 2010, Bioinform..

[63]  C. Glass,et al.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.

[64]  P. Schrauwen,et al.  Mitochondrial dysfunction and lipotoxicity. , 2010, Biochimica et biophysica acta.

[65]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[66]  S. Kaneko,et al.  Clock gene expression in peripheral leucocytes of patients with type 2 diabetes , 2009, Diabetologia.

[67]  Steve Horvath,et al.  WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.

[68]  Jason P. DeBruyne,et al.  CLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock , 2007, Nature Neuroscience.

[69]  A. Nordheim,et al.  Requirement for serum response factor for skeletal muscle growth and maturation revealed by tissue-specific gene deletion in mice. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[70]  E. Weibel,et al.  Response of Skeletal Muscle Mitochondria to Hypoxia , 2003, Experimental physiology.

[71]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[72]  U. Schibler,et al.  A Serum Shock Induces Circadian Gene Expression in Mammalian Tissue Culture Cells , 1998, Cell.

[73]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[74]  Lawrence A Leiter,et al.  Glucose transport in human skeletal muscle cells in culture. Stimulation by insulin and metformin. , 1992, The Journal of clinical investigation.