Reconstruction of Simulated Magnetic Resonance Fingerprinting Using Accelerated Distance Metric Learning

Purpose: Magnetic Resonance Fingerprinting (MRF) is a novel framework that uses a random acquisition to acquire a unique tissue response, or fingerprint. Through a pattern-matching algorithm, every voxel-vise fingerprint is matched with a pre-calculated dictionary of simulated fingerprints to obtain MR parameters of interest. Currently, a correlation algorithm performs the MRF matching, which is time-consuming. Moreover, MRF suffers from highly undersampled k-space data, thereby reconstructed images have aliasing artifact, propagated to the estimated quantitative maps. We propose using a distance metric learning method as a matching algorithm and a Singular Value Decomposition (SVD) to compress the dictionary, intending to promote the accuracy of MRF and expedite the matching process. Materials and Methods: In this investigation, a distance metric learning method, called the Relevant Component Analysis (RCA) was used to match the fingerprints from the undersampled data with a compressed dictionary to create quantitative maps accurately and rapidly. An Inversion Recovery Fast Imaging with Steady-State (IR-FISP) MRF sequence was simulated based on an Extended Phase Graph (EPG) on a digital brain phantom. The performance of our work was compared with the original MRF paper. Results: Effectiveness of our method was evaluated with statistical analysis. Compared with the correlation algorithm and full-sized dictionary, this method acquires tissue parameter maps with more accuracy and better computational speed. Conclusion: Our numerical results show that learning a distance metric of the undersampled training data accompanied by a compressed dictionary improves the accuracy of the MRF matching and overcomes the computation complexity.

[1]  Dwight G Nishimura,et al.  Fast 3D imaging using variable‐density spiral trajectories with applications to limb perfusion , 2003, Magnetic resonance in medicine.

[2]  Tomer Hertz,et al.  Learning a Mahalanobis Metric from Equivalence Constraints , 2005, J. Mach. Learn. Res..

[3]  Yun Jiang,et al.  Improved magnetic resonance fingerprinting reconstruction with low‐rank and subspace modeling , 2018, Magnetic resonance in medicine.

[4]  Rong Jin,et al.  Distance Metric Learning: A Comprehensive Survey , 2006 .

[5]  Vikas Gulani,et al.  MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout. , 2015, Magnetic resonance in medicine.

[6]  Yun Jiang,et al.  SVD Compression for Magnetic Resonance Fingerprinting in the Time Domain , 2014, IEEE Transactions on Medical Imaging.

[7]  Jeffrey A. Fessler,et al.  Nonuniform fast Fourier transforms using min-max interpolation , 2003, IEEE Trans. Signal Process..

[8]  Masashi Sugiyama,et al.  Dimensionality Reduction of Multimodal Labeled Data by Local Fisher Discriminant Analysis , 2007, J. Mach. Learn. Res..

[9]  J. Duerk,et al.  Magnetic Resonance Fingerprinting , 2013, Nature.

[10]  F. Knoll,et al.  Low rank alternating direction method of multipliers reconstruction for MR fingerprinting , 2016, Magnetic resonance in medicine.

[11]  Alexei Botchkarev,et al.  Performance Metrics (Error Measures) in Machine Learning Regression, Forecasting and Prognostics: Properties and Typology , 2018, Interdisciplinary Journal of Information, Knowledge, and Management.

[12]  Mariya Doneva,et al.  Matrix completion-based reconstruction for undersampled magnetic resonance fingerprinting data. , 2017, Magnetic resonance imaging.

[13]  Wei Liu,et al.  Learning Distance Metrics with Contextual Constraints for Image Retrieval , 2006, 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'06).

[14]  Xiaogang Wang,et al.  Magnetic Resonance Fingerprinting with compressed sensing and distance metric learning , 2016, Neurocomputing.

[15]  Matthias Weigel,et al.  Extended phase graphs: Dephasing, RF pulses, and echoes ‐ pure and simple , 2015, Journal of magnetic resonance imaging : JMRI.

[16]  Hongtu Zhu,et al.  Tensor Regression with Applications in Neuroimaging Data Analysis , 2012, Journal of the American Statistical Association.

[17]  Josef Pfeuffer,et al.  AIR-MRF: Accelerated iterative reconstruction for magnetic resonance fingerprinting. , 2017, Magnetic resonance imaging.

[18]  Dwight G Nishimura,et al.  Time‐optimal multidimensional gradient waveform design for rapid imaging , 2004, Magnetic resonance in medicine.

[19]  Alan C. Evans,et al.  BrainWeb: Online Interface to a 3D MRI Simulated Brain Database , 1997 .

[20]  Craig H Meyer,et al.  Estimation of k‐space trajectories in spiral MRI , 2009, Magnetic resonance in medicine.