Critical Evaluation of Imprinted Gene Expression by RNA–Seq: A New Perspective
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[1] D. Barlow,et al. The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus , 1991, Nature.
[2] Emily H Turner,et al. Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes , 2009, Nature.
[3] David Haig,et al. Sex-Specific Parent-of-Origin Allelic Expression in the Mouse Brain , 2010, Science.
[4] Bradley J. Main,et al. BMC Genomics BioMed Central Methodology article Allele-specific expression assays using Solexa , 2009 .
[5] A. Efstratiadis,et al. Parental imprinting of the mouse insulin-like growth factor II gene , 1991, Cell.
[6] S. Elbein,et al. Detection of allelic imbalance in gene expression using pyrosequencing. , 2007, Methods in molecular biology.
[7] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[8] I. Goodhead,et al. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution , 2008, Nature.
[9] T. Bestor,et al. WAMIDEX: A web atlas of murine genomic imprinting and differential expression , 2008, Epigenetics.
[10] M. Surani,et al. Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis , 1984, Nature.
[11] Thomas M. Keane,et al. Mouse genomic variation and its effect on phenotypes and gene regulation , 2011, Nature.
[12] David Haussler,et al. The UCSC genome browser database: update 2007 , 2006, Nucleic Acids Res..
[13] Kenta Nakai,et al. Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. , 2011, Genome research.
[14] J. Cavaille,et al. Non‐coding RNAs in imprinted gene clusters , 2008, Biology of the cell.
[15] L. Maquat,et al. Failsafe nonsense-mediated mRNA decay does not detectably target eIF4E-bound mRNA , 2007, Nature Structural &Molecular Biology.
[16] S. Luo,et al. High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain , 2010, Science.
[17] M. Surani,et al. Embryological and molecular investigations of parental imprinting on mouse chromosome 7 , 1991, Nature.
[18] T. Babak,et al. Global Survey of Genomic Imprinting by Transcriptome Sequencing , 2008, Current Biology.
[19] Lira Mamanova,et al. FRT-seq: Amplification-free, strand-specific, transcriptome sequencing , 2010, Nature Methods.
[20] K. Hahm,et al. Cloning of novel trinucleotide-repeat (CAG) containing genes in mouse brain. , 1997, Biochemical and biophysical research communications.
[21] M. Hidalgo,et al. Pyrosequencing protocol using a universal biotinylated primer for mutation detection and SNP genotyping , 2007, Nature Protocols.
[22] Eric E Schadt,et al. Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation , 2010, BMC Genomics.
[23] Paul Scherz,et al. Functional analysis of secreted and transmembrane proteins critical to mouse development , 2001, Nature Genetics.
[24] Kiyoshi Asai,et al. The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs , 2008, Nucleic Acids Res..
[25] Y. Ihara,et al. One of the antigenic determinants of paired helical filaments is related to tau protein. , 1986, Journal of biochemistry.
[26] C. Beechey,et al. Complementation studies with mouse translocations. , 1978, Cytogenetics and cell genetics.
[27] John C. Marioni,et al. Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data , 2009, Bioinform..
[28] Aya Kojima,et al. fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences , 2006, Nucleic Acids Res..
[29] U. Francke,et al. Lack of Pwcr1/MBII-85 snoRNA is critical for neonatal lethality in Prader–Willi syndrome mouse models , 2005, Mammalian Genome.
[30] E. Mardis,et al. Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain , 2008, PloS one.
[31] D. Barlow,et al. Gametic Imprinting in Mammals , 1995, Science.
[32] al. et,et al. Massive cell death of immature hematopoietic cells and neurons in Bcl-x-deficient mice , 1995, Science.
[33] D. Clayton,et al. Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing , 2009, Human molecular genetics.
[34] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[35] Charles Lee,et al. Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution , 2007, PLoS genetics.
[36] A. Wood,et al. Genomic Imprinting of Dopa decarboxylase in Heart and Reciprocal Allelic Expression with Neighboring Grb10 , 2007, Molecular and Cellular Biology.
[37] M. Bartolomei,et al. Parental imprinting of the mouse H19 gene , 1991, Nature.
[38] C. Nusbaum,et al. Key considerations for measuring allelic expression on a genomic scale using high‐throughput sequencing , 2010, Molecular ecology.
[39] Michael Krawczak,et al. Statistical inference of allelic imbalance from transcriptome data , 2011, Human mutation.
[40] Eleazar Eskin,et al. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains , 2007, Nature.
[41] R. Oakey,et al. Retrotransposition and genomic imprinting. , 2010, Briefings in functional genomics.
[42] A. Wood,et al. Allele-specific demethylation at an imprinted mammalian promoter , 2007, Nucleic acids research.
[43] J. Thierry-Mieg,et al. AceView: a comprehensive cDNA-supported gene and transcripts annotation , 2006, Genome Biology.
[44] Z. Ning,et al. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of GC-biased genomes , 2009, Nature Methods.
[45] K. Anderson,et al. The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation , 2011, Nature Genetics.
[46] J. Graves,et al. Evolution of genomic imprinting: insights from marsupials and monotremes. , 2009, Annual review of genomics and human genetics.
[47] H. Spencer,et al. A census of mammalian imprinting. , 2005, Trends in genetics : TIG.
[48] DP Barlow. Methylation and imprinting: from host defense to gene regulation? , 1993, Science.
[49] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..
[50] S. Scherer,et al. Comparative analysis of human chromosome 7q21 and mouse proximal chromosome 6 reveals a placental-specific imprinted gene, TFPI2/Tfpi2, which requires EHMT2 and EED for allelic-silencing. , 2008, Genome research.
[51] T. Borodina,et al. Transcriptome analysis by strand-specific sequencing of complementary DNA , 2009, Nucleic acids research.
[52] A. Wood,et al. Chromosome-wide identification of novel imprinted genes using microarrays and uniparental disomies , 2006, Nucleic acids research.
[53] L. Coin,et al. Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads , 2011, Genome Biology.