O-GlcNAcylation alters its protein-protein interactions and genomic 1 occupancy to modulate gene expression in pluripotent cells 2 3

[1]  J. Doudna,et al.  Surveillance and Processing of Foreign DNA by the Escherichia coli CRISPR-Cas System , 2015, Cell.

[2]  Wesley R. Legant,et al.  Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells , 2014, Cell.

[3]  Kyong-Tai Kim,et al.  O‐GlcNAcase is essential for embryonic development and maintenance of genomic stability , 2012, Aging cell.

[4]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[5]  Ye Zhang,et al.  CARM1 Mediates Modulation of Sox2 , 2011, PloS one.

[6]  K. Hochedlinger,et al.  Sox2(+) adult stem and progenitor cells are important for tissue regeneration and survival of mice. , 2011, Cell stem cell.

[7]  Boris Lenhard,et al.  Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes , 2011, Nature Genetics.

[8]  A. Burlingame,et al.  Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells , 2011, Proceedings of the National Academy of Sciences.

[9]  Peter R Baker,et al.  Modification Site Localization Scoring Integrated into a Search Engine* , 2011, Molecular & Cellular Proteomics.

[10]  Ying Jin,et al.  PARP1 Poly(ADP-ribosyl)ates Sox2 to Control Sox2 Protein Levels and FGF4 Expression during Embryonic Stem Cell Differentiation* , 2009, The Journal of Biological Chemistry.

[11]  J. Thomson,et al.  Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry , 2009, Proceedings of the National Academy of Sciences.

[12]  B. Panning,et al.  An RNAi Screen of Chromatin Proteins Identifies Tip60-p400 as a Regulator of Embryonic Stem Cell Identity , 2008, Cell.

[13]  A. Rizzino,et al.  Small Increases in the Level of Sox2 Trigger the Differentiation of Mouse Embryonic Stem Cells , 2008, Stem cells.

[14]  T. Ichisaka,et al.  Generation of germline-competent induced pluripotent stem cells , 2007, Nature.

[15]  Alexei A. Sharov,et al.  Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells , 2007, Nature Cell Biology.

[16]  J. Schelter,et al.  Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies , 2007, Nature Methods.

[17]  William Stafford Noble,et al.  Quantifying similarity between motifs , 2007, Genome Biology.

[18]  M. Nakao,et al.  Inhibition of DNA binding of Sox2 by the SUMO conjugation. , 2006, Biochemical and biophysical research communications.

[19]  S. Yamanaka,et al.  Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors , 2006, Cell.

[20]  S. Walker,et al.  Discovery of O-GlcNAc transferase inhibitors. , 2005, Journal of the American Chemical Society.

[21]  Megan F. Cole,et al.  Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells , 2005, Cell.

[22]  H. Schöler,et al.  Modulation of the Activity of Multiple Transcriptional Activation Domains by the DNA Binding Domains Mediates the Synergistic Action of Sox2 and Oct-3 on the Fibroblast Growth Factor-4Enhancer* , 2000, The Journal of Biological Chemistry.

[23]  A. Rizzino,et al.  Identification of the Transactivation Domain of the Transcription Factor Sox-2 and an Associated Co-activator* , 2000, The Journal of Biological Chemistry.

[24]  N. Corbi,et al.  Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3. , 1995, Genes & development.

[25]  D. Chatterji,et al.  Accurate transcription initiation by RNA polymerase II from Candida utilis. , 1994, Biochemistry and molecular biology international.

[26]  D. Lilley,et al.  DNA Repair , 1998, Nucleic Acids and Molecular Biology.

[27]  Charles Elkan,et al.  Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.

[28]  W. Wooster,et al.  Crystal structure of , 2005 .