M-shape and W-shape bright incite by the fluctuations of the polarization in a-helix protein

In this work, under consideration is the coupled system of nonlinear Schrödinger (NSL) and Boussinesq equations that serves as model to study the polarization fluctuation in α-helical protein. M-shaped and W-shaped solutions have been derived through the new modified Sardar sub-equation technique (SSEM). These solitons solutions define the polarization dynamics in the α-helical protein. The integration naturally leads to a constraint condition placed on the solitary wave variables which must hold for the solitary waves to exist. In addition, the standard linear stability analysis has permitted to study the behavior of the Modulation Instability (MI) gain spectra. Numerical simulation and physical interpretations of the acquired results are demonstrated. The derived structure of the acquired solutions give a rich platform to better understand the nonlinear dynamics in the α-helical protein.

[1]  H. Rezazadeh,et al.  New Solitary Wave Solutions for Variants of (3+1)-Dimensional Wazwaz-Benjamin-Bona-Mahony Equations , 2020, Frontiers in Physics.

[2]  S. Y. Doka,et al.  The discrete tanh method for solving the nonlinear differential-difference equations , 2020 .

[3]  D. Baleanu,et al.  Exact optical solitons of the perturbed nonlinear Schrödinger–Hirota equation with Kerr law nonlinearity in nonlinear fiber optics , 2020 .

[4]  A. Souleymanou,et al.  Generalized Darboux transformation and parameter-dependent rogue wave solutions to a nonlinear Schrödinger system , 2018, Nonlinear Dynamics.

[5]  Wen-Li Yang,et al.  Asymmetric W-shaped and M-shaped soliton pulse generated from a weak modulation in an exponential dispersion decreasing fiber , 2017 .

[6]  C. B. Tabi,et al.  Fluctuations of polarization induce multisolitons in α-helix protein , 2017 .

[7]  C. B. Tabi,et al.  Fluctuations of polarization induce multisolitons in $$\alpha $$α-helix protein , 2017 .

[8]  K. Chow,et al.  Effects of Ellipticity Angle on Modulation Instabilities in Birefringent Optical Fibers , 2016 .

[9]  E. Zayed,et al.  A new Jacobi elliptic function expansion method for solving a nonlinear PDE describing the nonlinear low-pass electrical lines , 2015 .

[10]  Liming Ling,et al.  Rational W-shaped Optical Soliton on Continuous Wave in Presence of Kerr Dispersion and Stimulated Raman Scattering , 2013, 1310.7693.

[11]  Benoît Roux,et al.  Accurate Molecular Polarizabilities Based on Continuum Electrostatics. , 2008, Journal of chemical theory and computation.

[12]  Y. Kivshar,et al.  Multi-soliton energy transport in anharmonic lattices , 2000, nlin/0009038.

[13]  X. Pang Vibrational Energy-Spectra of Protein Molecules and Non-thermally Biological Effect of Infrared Light , 2001 .

[14]  T. Kofané,et al.  Influence of the fluctuations of polarization in molecular chains , 1997 .

[15]  C. Mant,et al.  α-Helical Protein Assembly Motifs* , 1997, The Journal of Biological Chemistry.

[16]  Kofané,et al.  Nonlinear effects in molecular chains with two types of intramolecular vibrations. , 1996, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[17]  L. Brizhik,et al.  Electron autolocalized states in molecular chains , 1995 .

[18]  R. L. Baldwin,et al.  The mechanism of alpha-helix formation by peptides. , 1992, Annual review of biophysics and biomolecular structure.

[19]  A. Davydov Bisoliton Mechanism of High‐Temperature Superconductivity , 1988 .

[20]  R. Hirota,et al.  Soliton solutions of a coupled Korteweg-de Vries equation , 1981 .

[21]  C. Duke,et al.  Influence of polarization fluctuations on the electronic structure of molecular solids , 1977 .