Best practice in Ecopath with Ecosim food-web models for ecosystem-based management

[1]  J. Heymans,et al.  Regime shifts in the Northern Benguela ecosystem: Challenges for management , 2016 .

[2]  Erin Scott,et al.  A Stepwise Fitting Procedure for automated fitting of Ecopath with Ecosim models , 2016, SoftwareX.

[3]  Kerim Aydin,et al.  Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations , 2016 .

[4]  Hayley J Bannister,et al.  Making modelling count - increasing the contribution of shelf-seas community and ecosystem models to policy development and management , 2015 .

[5]  Nathalie Niquil,et al.  Incorporating food-web parameter uncertainty into Ecopath-derived ecological network indicators , 2015 .

[6]  V. Christensen,et al.  Trophic modeling of the continental shelf ecosystem outside of Tabasco, Mexico: A network and modularity analysis , 2015 .

[7]  V. Christensen,et al.  Modelling dynamic ecosystems: venturing beyond boundaries with the Ecopath approach , 2015, Reviews in Fish Biology and Fisheries.

[8]  Baris Salihoglu,et al.  EwE-F 1.0: an implementation of Ecopath with Ecosim in Fortran 95/2003 for coupling , 2015 .

[9]  J. Heymans,et al.  Investigating the recent decline in gadoid stocks in the west of Scotland shelf ecosystem using a foodweb model , 2015 .

[10]  F. Arreguín-Sánchez,et al.  Approaching a functional measure of vulnerability in marine ecosystems , 2014 .

[11]  Jeroen Steenbeek,et al.  Representing Variable Habitat Quality in a Spatial Food Web Model , 2014, Ecosystems.

[12]  Nathalie Niquil,et al.  A toolbox to evaluate data reliability for whole-ecosystem models: Application on the Bay of Biscay continental shelf food-web model , 2014 .

[13]  Lisa M. Clough,et al.  Using stable isotope analysis to validate effective trophic levels from Ecopath models of areas closed and open to shrimp trawling in Core Sound, NC, USA , 2014 .

[14]  Marta Coll,et al.  Global Patterns in Ecological Indicators of Marine Food Webs: A Modelling Approach , 2014, PloS one.

[15]  V. Christensen,et al.  Ecopath 30 Years Conference Proceedings : Extended Abstracts , 2014 .

[16]  Steven Mackinson,et al.  Combined analyses reveal environmentally driven changes in the North Sea ecosystem and raise questions regarding what makes an ecosystem model’s performance credible? , 2014 .

[17]  S. Niiranen,et al.  Ecological Network Indicators of Ecosystem Status and Change in the Baltic Sea , 2013, PloS one.

[18]  Kelly Kearney,et al.  Amplification and attenuation of increased primary production in a marine food web , 2013 .

[19]  Nicolas Hoepffner,et al.  Bridging the gap between ecosystem modeling tools and geographic information systems: Driving a food web model with external spatial–temporal data , 2013 .

[20]  Jérôme Guitton,et al.  EcoBase : A Repository Solution to Gather and Communicate Information from EwE Models , 2013 .

[21]  S. Ramsvatn Investigating coastal ecosystem structure and dynamics using Ecopath mass-balance modelling and stable isotope data , 2013 .

[22]  V. Christensen,et al.  Food web structure and vulnerability of a deep-sea ecosystem in the NW Mediterranean Sea , 2013 .

[23]  K. Orr Predicting the ecosystem effects of harvesting beach-cast kelp for biofuel , 2013 .

[24]  A. Rindorf,et al.  Interim Report of the Working Group on Multispecies Assessment Methods (WGSAM): 21-25 October 2013, Stockholm, Sweden , 2013 .

[25]  Kerim Aydin,et al.  Beyond the defaults: functional response parameter space and ecosystem-level fishing thresholds in dynamic food web model simulations , 2012 .

[26]  A. Bundy,et al.  Effects of environmental change, fisheries and trophodynamics on the ecosystem of the western Scotian Shelf, Canada , 2012 .

[27]  T. Brey A multi‐parameter artificial neural network model to estimate macrobenthic invertebrate productivity and production , 2012 .

[28]  S. Niiranen,et al.  Ecosystem flow dynamics in the Baltic Proper-Using a multi-trophic dataset as a basis for food-web modelling , 2012 .

[29]  Carl J. Walters,et al.  Foraging arena theory , 2012 .

[30]  Kerim Aydin,et al.  What drives dynamics in the Gulf of Alaska? Integrating hypotheses of species, fishing, and climate relationships using ecosystem modeling , 2011 .

[31]  Jason S. Link,et al.  Adding rigor to ecological network models by evaluating a set of pre-balance diagnostics: A plea for PREBAL , 2010 .

[32]  T. Brey An empirical model for estimating aquatic invertebrate respiration , 2010 .

[33]  Kenneth Irvine,et al.  Lake of flies, or lake of fish? A trophic model of Lake Malawi , 2010 .

[34]  Hong Jiang,et al.  Which forcing factors fit? Using ecosystem models to investigate the relative influence of fishing and changes in primary productivity on the dynamics of marine ecosystems , 2009 .

[35]  M. Coll,et al.  Decadal changes in a NW Mediterranean Sea food web in relation to fishing exploitation , 2009 .

[36]  S. Mackinson,et al.  Mixed-fishery or ecosystem conundrum? Multispecies considerations inform thinking on long-term management of North Sea demersal stocks , 2009 .

[37]  J. Link,et al.  The Northeast U.S. continental shelf Energy Modeling and Analysis exercise (EMAX): Ecological network model development and basic ecosystem metrics , 2008 .

[38]  M. Coll,et al.  Food-web dynamics in the South Catalan Sea ecosystem (NW Mediterranean) for 1978-2003 , 2008 .

[39]  Volker Grimm,et al.  Patterns for parameters in simulation models , 2007 .

[40]  Villy Christensen,et al.  Evaluating Network Analysis Indicators of Ecosystem Status in the Gulf of Alaska , 2007, Ecosystems.

[41]  L. Morissette Complexity, cost and quality of ecosystem models and their impact on resilience : a comparative analysis, with emphasis on marine mammals and the Gulf of St. Lawrence , 2007 .

[42]  Advances in marine ecosystem modelling research , 2007 .

[43]  Éva E Plagányi,et al.  Models for an ecosystem approach to fisheries , 2007 .

[44]  Uta Berger,et al.  Pattern-Oriented Modeling of Agent-Based Complex Systems: Lessons from Ecology , 2005, Science.

[45]  P. Pepin Fisheries Ecology and Management , 2005 .

[46]  Julia L. Blanchard,et al.  Aggregation and removal of weak-links in food-web models: system stability and recovery from disturbance , 2005 .

[47]  S. Heymans Ecosystem models of the Western and Central Aleutian Islands in 1963, 1979 and 1991. , 2005 .

[48]  S. Neira,et al.  Comparing the Benguela and Humboldt marine upwelling ecosystems with indicators derived from inter-calibrated models , 2005 .

[49]  C. Walters,et al.  Possible ecosystem impacts of applying MSY policies from single-species assessment , 2005 .

[50]  Konstantinos I. Stergiou,et al.  Feeding habits and trophic levels of Mediterranean fish , 2004, Reviews in Fish Biology and Fisheries.

[51]  David R. Anderson,et al.  Multimodel Inference , 2004 .

[52]  Elizabeth A. Fulton,et al.  Lessons learnt from a comparison of three ecosystem models for Port Phillip Bay, Australia , 2004 .

[53]  Carl J. Walters,et al.  Modelling stock dynamics in the southern Benguela ecosystem for the period 1978–2002 , 2004 .

[54]  Johanna J. Heymans,et al.  Changes in the northern Benguela ecosystem over three decades: 1970s, 1980s, and 1990s , 2004 .

[55]  Carl J. Walters,et al.  Ecopath with Ecosim: methods, capabilities and limitations , 2004 .

[56]  C. Walters,et al.  Structuring dynamic models of exploited ecosystems from trophic mass-balance assessments , 1997, Reviews in Fish Biology and Fisheries.

[57]  J. Polovina,et al.  Model of a coral reef ecosystem , 1984, Coral Reefs.

[58]  David R. Anderson,et al.  Understanding AIC and BIC in Model Selection , 2004 .

[59]  C. Walters,et al.  Quantitative fisheries stock assessment: Choice, dynamics and uncertainty , 2004, Reviews in Fish Biology and Fisheries.

[60]  Astrid Jarre,et al.  Trophic flows in the southern Benguela during the 1980s and 1990s , 2003 .

[61]  Steven J. D. Martell,et al.  Reconstructing ecosystem dynamics in the central Pacific Ocean, 1952-1998. II. A preliminary assessment of the trophic impacts of fishing and effects on tuna dynamics , 2002 .

[62]  Johanna J. Heymans,et al.  Network analysis of the South Florida Everglades graminoid marshes and comparison with nearby cypress ecosystems , 2002 .

[63]  T. Pitcher,et al.  Ecosystem models of Newfoundland for the time periods 1995, 1985, 1900 and 1450. , 2002 .

[64]  F. Arreguín-Sánchez,et al.  An inverse relationship between stability and maturity in models of aquatic ecosystems , 2001 .

[65]  Villy Christensen,et al.  Ecospace: Prediction of Mesoscale Spatial Patterns in Trophic Relationships of Exploited Ecosystems, with Emphasis on the Impacts of Marine Protected Areas , 1999, Ecosystems.

[66]  Thomas Brey,et al.  A collection of empirical relations for use in ecological modelling , 1999 .

[67]  Chih-Ling Tsai,et al.  A crossvalidatory AIC for hard wavelet thresholding in spatially adaptive function estimation , 1998 .

[68]  Daniel Pauly,et al.  Predicting food consumption of fish populations as functions of mortality, food type, morphometrics, temperature and salinity , 1998 .

[69]  V. Christensen Ecosystem maturity - towards quantification , 1995 .

[70]  Villy Christensen,et al.  Trophic models of aquatic ecosystems , 1993 .

[71]  Villy Christensen,et al.  ECOPATH II − a software for balancing steady-state ecosystem models and calculating network characteristics , 1992 .

[72]  Robert E. Ulanowicz,et al.  The Comparative Ecology of Six Marine Ecosystems , 1991 .

[73]  K. Mann,et al.  Production and use of detritus in various freshwater, estuarine, and coastal marine ecosystems , 1988 .

[74]  K. Kovacs,et al.  FEEDING RATES OF SEALS AND WHALES , 1987 .

[75]  J. Polovina,et al.  I. The ECOPATH Model and Its Application to French Frigate Shoals , 1984 .

[76]  R. Peters The Ecological Implications of Body Size , 1983 .

[77]  J. G. Field,et al.  The Ecological Role of Water-Column Microbes in the Sea* , 1983 .

[78]  D. Pauly On the interrelationships between natural mortality, growth parameters, and mean environmental temperature in 175 fish stocks , 1980 .

[79]  S. Nilsson,et al.  Numbers, Food Consumption, and Fish Predation by Birds in Lake Mockeln, Southern Sweden , 1976 .

[80]  J. Finn,et al.  Measures of ecosystem structure and function derived from analysis of flows. , 1976, Journal of theoretical biology.

[81]  H. Akaike A new look at the statistical model identification , 1974 .

[82]  E. Odum The strategy of ecosystem development. , 1969, Science.

[83]  G. Winberg,et al.  Rate of Metabolism and Food Requirements of Fishes , 1962 .