Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets

[1]  J. Yates,et al.  Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. , 1995, Analytical chemistry.

[2]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[3]  C. Allis,et al.  Dynamic alterations of specific histone modifications during early murine development , 2004, Journal of Cell Science.

[4]  R. Kodell,et al.  Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice , 1998, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[5]  Robert Gentleman,et al.  Using GOstats to test gene lists for GO term association , 2007, Bioinform..

[6]  G. Brockmann,et al.  High-fat diet leads to a decreased methylation of theMc4r gene in the obese BFMI and the lean B6 mouse lines , 2010, Journal of Applied Genetics.

[7]  N. Roy,et al.  Dietary arachidonic acid-mediated effects on colon inflammation using transcriptome analysis. , 2010, Molecular nutrition & food research.

[8]  J. Cooney,et al.  Dietary oleic acid as a control fatty acid for polyunsaturated fatty acid intervention studies: a transcriptomics and proteomics investigation using interleukin-10 gene-deficient mice. , 2010, Biotechnology journal.

[9]  A. Bräuer,et al.  The brain selenoproteome: priorities in the hierarchy and different levels of selenium homeostasis in the brain of selenium‐deficient rats , 2009, Journal of neurochemistry.

[10]  Kirsten R. McEwen,et al.  An Unbiased Assessment of the Role of Imprinted Genes in an Intergenerational Model of Developmental Programming , 2012, PLoS genetics.

[11]  Gladis Montoya-Ortiz,et al.  Epigenetics and Autoimmune Diseases , 2012, Autoimmune diseases.

[12]  I. Adcock,et al.  Abnormal histone acetylase and deacetylase expression and function in lung inflammation , 2006, Inflammation Research.

[13]  K. Armstrong,et al.  Investigating micronutrients and epigenetic mechanisms in relation to inflammatory bowel disease. , 2010, Mutation research.

[14]  K. Nones,et al.  Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species , 2010, BMC Immunology.

[15]  Aedín C Culhane,et al.  A multivariate analysis approach to the integration of proteomic and gene expression data , 2007, Proteomics.

[16]  R. Weindruch,et al.  A methyl‐deficient diet modifies histone methylation and alters Igf2 and H19 repression in the prostate , 2008, The Prostate.

[17]  S. Tomar,et al.  Dietary effect of folate-rich fermented milk produced by Streptococcus thermophilus strains on hemoglobin level. , 2011, Nutrition.

[18]  K. Armstrong,et al.  Global DNA methylation measurement by HPLC using low amounts of DNA. , 2011, Biotechnology journal.

[19]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[20]  A. Lusis,et al.  Ligand activation of LXRβ reverses atherosclerosis and cellular cholesterol overload in mice lacking LXRα and apoE , 2007 .

[21]  J. Cooney,et al.  Proteomic analysis of colon tissue from interleukin-10 gene-deficient mice fed polyunsaturated Fatty acids with comparison to transcriptomic analysis. , 2012, Journal of proteome research.

[22]  D. Yellon,et al.  Role of nuclear factor‐κB activation in acute ischaemia‐reperfusion injury in myocardium , 2003 .

[23]  Yuan-Xiang Pan,et al.  Protein restriction during gestation alters histone modifications at the glucose transporter 4 (GLUT4) promoter region and induces GLUT4 expression in skeletal muscle of female rat offspring. , 2012, The Journal of nutritional biochemistry.

[24]  A. Ly,et al.  Folate and DNA methylation. , 2012, Antioxidants & redox signaling.

[25]  W. J. Visek,et al.  Growth, reproduction, and tissue concentrations of selenium in the selenium-depleted rat. , 1971, The Journal of nutrition.

[26]  C. Davis,et al.  DNA Methylation, Cancer Susceptibility, and Nutrient Interactions , 2004, Experimental biology and medicine.

[27]  W. Parnell,et al.  NZ Food: NZ People - Key results of the 1997 National Nutrition Survey , 1999 .

[28]  S. Bulun,et al.  Hypermethylation of the CpG Island Spanning From Exon II to Intron III is Associated With Steroidogenic Factor 1 Expression in Stromal Cells of Endometriosis , 2011, Reproductive Sciences.

[29]  E. Scarano,et al.  DNA Methylation , 1973, Nature.

[30]  J. Mathers,et al.  Effect of Maternal and Post-Weaning Folate Supply on Gene-Specific DNA Methylation in the Small Intestine of Weaning and Adult Apc+/Min and Wild Type Mice , 2011, Front. Gene..

[31]  P. Sperryn,et al.  Blood. , 1989, British journal of sports medicine.

[32]  J. Mathers,et al.  Folate depletion during pregnancy and lactation reduces genomic DNA methylation in murine adult offspring , 2011, Genes & Nutrition.

[33]  D. Comeskey,et al.  Folate Measurement in Mammalian Tissues by Fluorescence Polarization , 2011 .

[34]  Lixin Yang,et al.  Epithelium-specific glutathione peroxidase, Gpx2, is involved in the prevention of intestinal inflammation in selenium-deficient mice. , 2005, The Journal of nutrition.

[35]  V. Santé-Lhoutellier,et al.  Proteomic analysis reveals changes in the liver protein pattern of rats exposed to dietary folate deficiency. , 2005, The Journal of nutrition.

[36]  J. Martín-Subero How epigenomics brings phenotype into being. , 2011, Pediatric endocrinology reviews : PER.

[37]  G. Wolff,et al.  Maternal methyl supplements in mice affect epigenetic variation and DNA methylation of offspring. , 2002, The Journal of nutrition.

[38]  M. Barnett,et al.  Epigenetics—What Role Could This Play in Functional Foods and Personalized Nutrition? , 2013 .

[39]  C. Larsson,et al.  Epigenetic regulation of glucose transporter 4 by estrogen receptor β. , 2011, Molecular endocrinology.

[40]  J. Mathers,et al.  Maternal folate supply and sex influence gene-specific DNA methylation in the fetal gut. , 2011, Molecular nutrition & food research.

[41]  E. Zabarovsky,et al.  Integrin alpha9 (ITGA9) expression and epigenetic silencing in human breast tumors , 2011, Cell adhesion & migration.

[42]  W. J. Visek,et al.  Biochemical and Molecular Roles of Nutrients Lipid Level and Type Alter Stearoyl CoA Desaturase mRNA Abundance Differently in Mice with Distinct Susceptibilities to Diet-Influenced Diseases , 1997 .

[43]  Peter Cheung,et al.  Epigenetic regulation by histone methylation and histone variants. , 2005, Molecular endocrinology.

[44]  H. Lehr,et al.  Histone deacetylases: novel targets for prevention of colitis-associated cancer in mice , 2008, Gut.

[45]  Neil Mann,et al.  Origins and evolution of the Western diet: health implications for the 21st century. , 2005, The American journal of clinical nutrition.

[46]  T. Willson,et al.  Synthetic LXR ligand inhibits the development of atherosclerosis in mice , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[47]  Q. Lu,et al.  Epigenetics, disease, and therapeutic interventions , 2006, Ageing Research Reviews.

[48]  R. Harris,et al.  Maternal methyl-donor supplementation induces prolonged murine offspring colitis susceptibility in association with mucosal epigenetic and microbiomic changes. , 2011, Human molecular genetics.

[49]  R. Waterland Epigenetic mechanisms and gastrointestinal development. , 2006, The Journal of pediatrics.

[50]  David I. K. Martin,et al.  A Sustained Dietary Change Increases Epigenetic Variation in Isogenic Mice , 2011, PLoS genetics.

[51]  Mark A Hanson,et al.  Metabolic plasticity during mammalian development is directionally dependent on early nutritional status , 2007, Proceedings of the National Academy of Sciences.

[52]  Sang-Woon Choi,et al.  Folate supplementation differently affects uracil content in DNA in the mouse colon and liver , 2011, British Journal of Nutrition.

[53]  J. Mathers Session 2: Personalised nutrition Epigenomics: a basis for understanding individual differences? , 2008, Proceedings of the Nutrition Society.

[54]  R. Zhao,et al.  Selenite reactivates silenced genes by modifying DNA methylation and histones in prostate cancer cells. , 2008, Carcinogenesis.

[55]  Paolo Sassone-Corsi,et al.  Connecting Threads: Epigenetics and Metabolism , 2012, Cell.

[56]  D. Loesch,et al.  FMR1 intron 1 methylation predicts FMRP expression in blood of female carriers of expanded FMR1 alleles. , 2011, The Journal of molecular diagnostics : JMD.

[57]  J. Davis Bioinformatics and Computational Biology Solutions Using R and Bioconductor , 2007 .

[58]  K. Ghoshal,et al.  A folate- and methyl-deficient diet alters the expression of DNA methyltransferases and methyl CpG binding proteins involved in epigenetic gene silencing in livers of F344 rats. , 2006, The Journal of nutrition.

[59]  A. Baccarelli,et al.  Gestational intake of methyl donors and global LINE-1 DNA methylation in maternal and cord blood: Prospective results from a folate-replete population , 2012, Epigenetics.

[60]  Robert A. Waterland,et al.  Transposable Elements: Targets for Early Nutritional Effects on Epigenetic Gene Regulation , 2003, Molecular and Cellular Biology.

[61]  N. Roy,et al.  Nutrigenomics applied to an animal model of Inflammatory Bowel Diseases: transcriptomic analysis of the effects of eicosapentaenoic acid- and arachidonic acid-enriched diets. , 2007, Mutation research.

[62]  C. Thomson,et al.  The changing selenium status of New Zealand residents. , 1996, European journal of clinical nutrition.

[63]  C. Davis,et al.  Dietary folate and selenium affect dimethylhydrazine-induced aberrant crypt formation, global DNA methylation and one-carbon metabolism in rats. , 2003, The Journal of nutrition.

[64]  K. M. Thompson,et al.  Liver selenium and testis phospholipid hydroperoxide glutathione peroxidase are associated with growth during selenium repletion of second-generation Se-deficient male rats. , 1998, The Journal of nutrition.

[65]  I. Rusyn,et al.  Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet. , 2009, Journal of hepatology.

[66]  Rafael A. Irizarry,et al.  Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .

[67]  T. Onaya,et al.  DNA demethylation during the differentiation of 3T3-L1 cells affects the expression of the mouse GLUT4 gene. , 1999, Diabetes.

[68]  D. Kell BMC Medical Genomics , 2008 .

[69]  J. Moan,et al.  The effect of folic acid on porphyrin synthesis in tumors and normal skin of mice treated with 5-aminolevulinic acid or methyl 5-aminolevulinate , 2006, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[70]  B. Ames,et al.  Vitamin K, an example of triage theory: is micronutrient inadequacy linked to diseases of aging? , 2009, The American journal of clinical nutrition.

[71]  F. Coppedè,et al.  Genetics, environmental factors and the emerging role of epigenetics in neurodegenerative diseases. , 2009, Mutation research.

[72]  K. Nones,et al.  Genome-Wide Analysis of Dietary Eicosapentaenoic Acid- and Oleic Acid-Induced Modulation of Colon Inflammation in Interleukin-10 Gene-Deficient Mice , 2008, Lifestyle Genomics.

[73]  J. Yates,et al.  An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.

[74]  K. K. Park,et al.  Evaluation of chemopreventive effect of dietary selenium-rich egg on mouse skin tumor induced by 2'-(4-nitrophenoxy)oxirane and 12-O-tetradecanoylphorbol-13-acetate. , 1995, Carcinogenesis.

[75]  V. Perry,et al.  Low protein diet fed exclusively during mouse oocyte maturation leads to behavioural and cardiovascular abnormalities in offspring , 2008, The Journal of physiology.

[76]  Huawei Zeng,et al.  Dietary selenomethionine increases exon-specific DNA methylation of the p53 gene in rat liver and colon mucosa. , 2011, The Journal of nutrition.

[77]  John K Field,et al.  Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. , 2005, Proceedings of the National Academy of Sciences of the United States of America.