About the intrinsic photochemical properties of the 11-cis retinal chromophore: computational clues for a trap state and a lever effect in Rhodopsin catalysis
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Marco Garavelli | Manuela Merchán | Luis Serrano-Andrés | Alessandro Cembran | L. Serrano-Andrés | Alessandro Cembran | M. Garavelli | M. Merchán | Remedios González-Luque | R. González-Luque
[1] F. Bernardi,et al. PHOTOCHEMISTRY OF HIGHLY ALKYLATED DIENES : COMPUTATIONAL EVIDENCE FOR A CONCERTED FORMATION OF BICYCLOBUTANE , 1999 .
[2] Marco Garavelli,et al. Cyclooctatetraene computational photo- and thermal chemistry: a reactivity model for conjugated hydrocarbons. , 2002, Journal of the American Chemical Society.
[3] Marco Garavelli,et al. Initial Excited-State Relaxation of the Isolated 11-cis Protonated Schiff Base of Retinal: Evidence for in-Plane Motion from ab Initio Quantum Chemical Simulation of the Resonance Raman Spectrum , 1999 .
[4] Marco Garavelli,et al. Counterion controlled photoisomerization of retinal chromophore models: a computational investigation. , 2004, Journal of the American Chemical Society.
[5] G. Kochendoerfer,et al. Retinal analog study of the role of steric interactions in the excited state isomerization dynamics of rhodopsin. , 1996, Biochemistry.
[6] Marco Garavelli,et al. Force Fields for “Ultrafast” Photochemistry: The S2 (1Bu) → S1 (2Ag) → S0 (1Ag) Reaction Path for all-trans-Hexa-1,3,5-triene , 1997 .
[7] Marco Garavelli,et al. Minimum energy paths in the excited and ground states of short protonated Schiff bases and of the analogous polyenes , 1998 .
[8] F. Bernardi,et al. Reaction path analysis of the "tunable" photoisomerization selectivity of free and locked retinal chromophores. , 2002, Journal of the American Chemical Society.
[9] Michael G. Motto,et al. THE ‘OPSIN SHIFT’ IN BACTERIORHODOPSIN: STUDIES WITH ARTIFICIAL BACTERIORHODOPSINS , 1981 .
[10] M Olivucci,et al. Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[11] F. Bernardi,et al. Geometry optimisation on a hypersphere. Application to finding reaction paths from a conical intersection , 1995 .
[12] K. Müller,et al. Location of saddle points and minimum energy paths by a constrained simplex optimization procedure , 1979 .
[13] D C Teller,et al. Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs). , 2001, Biochemistry.
[14] Roland Lindh,et al. New General Tools for Constrained Geometry Optimizations. , 2005, Journal of chemical theory and computation.
[15] Josep Maria Bofill,et al. A reduced‐restricted‐quasi‐Newton–Raphson method for locating and optimizing energy crossing points between two potential energy surfaces , 1997 .
[16] R. Hochstrasser,et al. Femtosecond Polarized Pump-Probe and Stimulated Emission Spectroscopy of the Isomerization Reaction of Rhodopsin , 1999 .
[17] Frank Terstegen,et al. ABSOLUTE SENSE OF TWIST OF THE C12-C13 BOND OF THE RETINAL CHROMOPHORE IN RHODOPSIN : SEMIEMPIRICAL AND NONEMPIRICAL CALCULATIONS OF CHIROPTICAL DATA , 1998 .
[18] Michael J. Bearpark,et al. Product Distribution in the Photolysis of s-cis Butadiene: A Dynamics Simulation , 2001 .
[19] Thom Vreven,et al. Ab Initio Photoisomerization Dynamics of a Simple Retinal Chromophore Model , 1997 .
[20] W. Fuß,et al. Reaction Path of a sub-200 fs Photochemical Electrocyclic Reaction , 2001 .
[21] F. Bernardi,et al. Excited-state singlet manifold and oscillatory features of a nonatetraeniminium retinal chromophore model. , 2003, Journal of the American Chemical Society.
[22] H. Kandori,et al. Photoisomerization in Rhodopsin , 2001, Biochemistry (Moscow).
[23] Barry R. Smith,et al. Relaxation Paths and Dynamics of Photoexcited Polyene Chains: Evidence for Creation and Annihilation of Neutral Soliton Pairs , 2000 .
[24] Marco Garavelli,et al. The C 5 H 6 NH 2 + Protonated Shiff Base: An ab Initio Minimal Model for Retinal Photoisomerization , 1997 .
[25] Michael Ottolenghi,et al. Foreword by the Guest Editors , 1995 .
[26] G. Wald. The molecular basis of visual excitation. , 1968, Nature.
[27] Marcus Elstner,et al. The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure. , 2004, Journal of molecular biology.
[28] Michael J. Bearpark,et al. A direct method for the location of the lowest energy point on a potential surface crossing , 1994 .
[29] Björn O. Roos,et al. Second-order perturbation theory with a complete active space self-consistent field reference function , 1992 .
[30] G. Kochendoerfer,et al. Spontaneous Emission Study of the Femtosecond Isomerization Dynamics of Rhodopsin , 1996 .
[31] Oliver Weingart,et al. Ground and excited states of retinal schiff base chromophores by multiconfigurational perturbation theory. , 2006, Biophysical journal.
[32] W. Fuß,et al. Twin states and conical intersections in linear polyenes , 2000 .
[33] B. Roos,et al. Theoretical study of the electronic spectrum of all-trans-1,3,5,7-octatetraene , 1993 .
[34] P. Song,et al. CRC handbook of organic photochemistry and photobiology , 2004 .
[35] Thom Vreven,et al. Potential-energy surfaces for ultrafast photochemistry Static and dynamic aspects , 1998 .
[36] F. Bernardi,et al. The short-chain acroleiniminium and pentadieniminium cations: towards a model for retinal photoisomerization. A CASSCF/PT2 study , 1999 .
[37] M. Sheves,et al. Carbon-13 NMR studies of model compounds for bacteriorhodopsin: factors affecting the retinal chromophore chemical shifts and absorption maximum , 1992 .
[38] Thom Vreven,et al. Photoisomerization Path for a Realistic Retinal Chromophore Model: The Nonatetraeniminium Cation , 1998 .
[39] Ramkumar Rajamani,et al. Combined QM/MM study of the opsin shift in bacteriorhodopsin , 2002, J. Comput. Chem..
[40] Michael G. Motto,et al. Hydroretinals and hydrorhodopsins , 1979 .
[41] Björn O. Roos,et al. The CASSCF state interaction method , 1989 .
[42] Barry R. Smith,et al. Relaxation Paths from a Conical Intersection: The Mechanism of Product Formation in the Cyclohexadiene/Hexatriene Photochemical Interconversion , 1997 .
[43] F. Bernardi,et al. The retinal chromophore/chloride ion pair: structure of the photoisomerization path and interplay of charge transfer and covalent states. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[44] V. Buss,et al. Origin and consequences of steric strain in the rhodopsin binding pocket. , 2006, Biochemistry.
[45] Marco Garavelli,et al. Intrinsically Competitive Photoinduced Polycyclization and Double-Bond Shift through a Boatlike Conical Intersection. , 2001, Angewandte Chemie.
[46] Massimo Olivucci,et al. Structure, initial excited-state relaxation, and energy storage of rhodopsin resolved at the multiconfigurational perturbation theory level , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[47] F. Buda,et al. Ab initio molecular dynamics of retinals , 1996 .
[48] Marco Garavelli,et al. Structure, spectroscopy, and spectral tuning of the gas-phase retinal chromophore: the beta-ionone "handle" and alkyl group effect. , 2005, The journal of physical chemistry. A.