Differential Processing of Propeptide Inhibitors of Rap Phosphatases in Bacillus subtilis

ABSTRACT In the phosphorelay signal transduction system for sporulation initiation in Bacillus subtilis, the opposing activities of histidine kinases and aspartyl phosphate phosphatases determine the cell's decision whether to continue with vegetative growth or to initiate the differentiation process. Regulated dephosphorylation of the Spo0A and Spo0F response regulators allows a variety of negative signals from physiological processes that are antithetical to sporulation to impact on the activation level of the phosphorelay. Spo0F∼P is the known target of two related phosphatases, RapA and RapB. In addition to RapA and RapB, a third member of the Rap family of phosphatases, RapE, specifically dephosphorylated the Spo0F∼P intermediate in response to competence development. RapE phosphatase activity was found to be controlled by a pentapeptide (SRNVT) generated from within the carboxy-terminal domain of the phrE gene product. A synthetic PhrE pentapeptide could (i) complement the sporulation deficiency caused by deregulated RapE activity of aphrE mutant and (ii) inhibit RapE-dependent dephosphorylation of Spo0F∼P in in vitro experiments. The PhrE pentapeptide did not inhibit the phosphatase activity of RapA and RapB. These results confirm previous conclusions that the specificity for recognition of the target phosphatase is contained within the amino acid sequence of the pentapeptide inhibitor.

[1]  S. Bron,et al.  Functional analysis of the secretory precursor processing machinery of Bacillus subtilis: identification of a eubacterial homolog of archaeal and eukaryotic signal peptidases. , 1998, Genes & development.

[2]  R. Losick,et al.  Bacillus Subtilis and Other Gram-Positive Bacteria: Biochemistry, Physiology, and Molecular Genetics , 1993 .

[3]  T. Hunter,et al.  Protein kinases and phosphatases: The Yin and Yang of protein phosphorylation and signaling , 1995, Cell.

[4]  A. Goffeau,et al.  The complete genome sequence of the Gram-positive bacterium Bacillus subtilis , 1997, Nature.

[5]  D. Dubnau,et al.  The major role of Spo0A in genetic competence is to downregulate abrB, an essential competence gene , 1995, Journal of bacteriology.

[6]  D. Lereclus,et al.  Construction of cloning vectors for Bacillus thuringiensis. , 1991, Gene.

[7]  J. S. Parkinson,et al.  Communication modules in bacterial signaling proteins. , 1992, Annual review of genetics.

[8]  M. Perego,et al.  A peptide export-import control circuit modulating bacterial development regulates protein phosphatases of the phosphorelay. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[9]  Philippe Glaser,et al.  Aspartyl‐phosphate phosphatases deactivate the response regulator components of the sporulation signal transduction system in Bacillus subtilis , 1996, Molecular microbiology.

[10]  J. Hoch,et al.  Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay , 1991, Cell.

[11]  S. Bron,et al.  Bacillus subtilis Contains Four Closely Related Type I Signal Peptidases with Overlapping Substrate Specificities , 1997, The Journal of Biological Chemistry.

[12]  M. Nakano,et al.  Transcription initiation region of the srfA operon, which is controlled by the comP-comA signal transduction system in Bacillus subtilis , 1991, Journal of bacteriology.

[13]  J. Hoch,et al.  Molecular recognition in signal transduction: the interaction surfaces of the Spo0F response regulator with its cognate phosphorelay proteins revealed by alanine scanning mutagenesis. , 1997, Journal of molecular biology.

[14]  A. S. Lynch,et al.  In vitro phosphorylation study of the arc two-component signal transduction system of Escherichia coli , 1997, Journal of bacteriology.

[15]  G. Fichant,et al.  Inventory, assembly and analysis of Bacillus subtilis ABC transport systems. , 1999, Journal of molecular biology.

[16]  S. Bron,et al.  The chemistry and enzymology of the type I signal peptidases , 1997, Protein science : a publication of the Protein Society.

[17]  J. Hoch,et al.  Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis , 1988, Molecular microbiology.

[18]  S. Brunak,et al.  SHORT COMMUNICATION Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites , 1997 .

[19]  C. Harwood,et al.  Molecular biological methods for Bacillus , 1990 .

[20]  A. Grossman,et al.  An Exported Peptide Functions Intracellularly to Contribute to Cell Density Signaling in B. subtilis , 1997, Cell.

[21]  A. Grossman,et al.  The spo0K locus of Bacillus subtilis is homologous to the oligopeptide permease locus and is required for sporulation and competence , 1991, Journal of bacteriology.

[22]  J. Hoch,et al.  Deactivation of the sporulation transcription factor Spo0A by the Spo0E protein phosphatase. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[23]  Jeff F. Miller,et al.  Integration of multiple domains in a two‐component sensor protein: the Bordetella pertussis BvgAS phosphorelay. , 1996, The EMBO journal.

[24]  M. Perego Integrational Vectors for Genetic Manipulation in Bacillus subtilis , 1993 .

[25]  T. Sato,et al.  Complete nucleotide sequence of a skin element excised by DNA rearrangement during sporulation in Bacillus subtilis. , 1995, Microbiology.

[26]  Francesc Posas,et al.  Yeast HOG1 MAP Kinase Cascade Is Regulated by a Multistep Phosphorelay Mechanism in the SLN1–YPD1–SSK1 “Two-Component” Osmosensor , 1996, Cell.

[27]  Philippe Glaser,et al.  Multiple protein-aspartate phosphatases provide a mechanism for the integration of diverse signals in the control of development in B. subtilis , 1994, Cell.

[28]  J. Hoch,et al.  Cell-cell communication regulates the effects of protein aspartate phosphatases on the phosphorelay controlling development in Bacillus subtilis. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[29]  H. R. Whiteley,et al.  Molecular cloning and characterization of two genes encoding sigma factors that direct transcription from a Bacillus thuringiensis crystal protein gene promoter , 1991, Journal of bacteriology.

[30]  J. Hoch,et al.  A novel histidine kinase inhibitor regulating development in Bacillus subtilis. , 1997, Genes & development.

[31]  A. Sonenshein,et al.  Transcriptional regulation of Bacillus subtilis glucose starvation-inducible genes: control of gsiA by the ComP-ComA signal transduction system , 1992, Journal of bacteriology.

[32]  R. Losick,et al.  Post‐transcriptional control of a sporulation regulatory gene encoding transcription factor σH in Bacillus subtilis , 1991, Molecular microbiology.

[33]  Jeffrey H. Miller Experiments in molecular genetics , 1972 .

[34]  M. Steinmetz,et al.  Plasmids designed to alter the antibiotic resistance expressed by insertion mutations in Bacillus subtilis, through in vivo recombination. , 1994, Gene.

[35]  D. Dubnau,et al.  Cloning and characterization of the regulatory Bacillus subtilis competence genes comA and comB , 1989, Journal of bacteriology.

[36]  J. Hoch,et al.  Subunit composition and domain structure of the Spo0A sporulation transcription factor of Bacillus subtilis. , 1994, The Journal of biological chemistry.

[37]  J. C. P. Moran RNA Polymerase and Transcription Factors , 1993 .

[38]  M. P. Gallagher,et al.  The oligopeptide transport system of Bacillus subtilis plays a role in the initiation of sporulation , 1991, Molecular microbiology.

[39]  A. Grossman,et al.  Purification and characterization of an extracellular peptide factor that affects two different developmental pathways in Bacillus subtilis. , 1996, Genes & development.

[40]  A. Ninfa,et al.  Protein phosphorylation and regulation of adaptive responses in bacteria. , 1989, Microbiological reviews.

[41]  D. Brautigan,et al.  Phosphatases as partners in signaling networks. , 1997, Advances in second messenger and phosphoprotein research.

[42]  G N Murshudov,et al.  The structural basis of sequence-independent peptide binding by OppA protein. , 1994, Science.

[43]  M. Simonen,et al.  Protein secretion in Bacillus species , 1993, Microbiological reviews.