Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data
暂无分享,去创建一个
Xia Li | Yongsheng Li | Jing Bai | Juan Xu | Yuan Wang | Zheng Zhao | Jinwen Zhang | Zishan Wang | Aiwei Wu | Xia Li | Y. Wang | Aiwei Wu | J. Bai | Yongsheng Li | Juan Xu | Jinwen Zhang | Zishan Wang | Zheng Zhao
[1] J. Vandesompele,et al. An update on LNCipedia: a database for annotated human lncRNA sequences , 2015, Nucleic Acids Res..
[2] Howard Y. Chang,et al. Long Noncoding RNAs: Cellular Address Codes in Development and Disease , 2013, Cell.
[3] Wei Wu,et al. NONCODEv4: exploring the world of long non-coding RNA genes , 2013, Nucleic Acids Res..
[4] A. Fatica,et al. Long non-coding RNAs: new players in cell differentiation and development , 2013, Nature Reviews Genetics.
[5] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[6] Jiajie Peng,et al. LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data , 2015, BMC Genomics.
[7] Cole Trapnell,et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. , 2011, Genes & development.
[8] J. Mattick,et al. Structure and function of long noncoding RNAs in epigenetic regulation , 2013, Nature Structural &Molecular Biology.
[9] Fang Zhou,et al. LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma , 2014, Gut.
[10] Sanghyuk Lee,et al. lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs , 2014, Bioinform..
[11] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[12] D. Spector,et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. , 2013, Cancer research.
[13] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[14] P. Pandolfi,et al. The multilayered complexity of ceRNA crosstalk and competition , 2014, Nature.
[15] J. Rinn,et al. Modular regulatory principles of large non-coding RNAs , 2012, Nature.
[16] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[17] Sean R. Davis,et al. NCBI GEO: archive for functional genomics data sets—update , 2012, Nucleic Acids Res..
[18] R. Kong,et al. P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression , 2014, Cell Death and Disease.
[19] Jeannie T. Lee,et al. X-Inactivation, Imprinting, and Long Noncoding RNAs in Health and Disease , 2013, Cell.
[20] Changning Liu,et al. ncFANs: a web server for functional annotation of long non-coding RNAs , 2011, Nucleic Acids Res..
[21] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[22] Hui Zhou,et al. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data , 2013, Nucleic Acids Res..
[23] Michael T. McManus,et al. Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs , 2013, PLoS genetics.
[24] Ji-Lin Wang,et al. A long non-coding RNA signature to improve prognosis prediction of colorectal cancer , 2014, Oncotarget.
[25] Jun S. Song,et al. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. , 2013, Cell stem cell.
[26] David G. Knowles,et al. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression , 2012, Genome research.
[27] Yadong Wang,et al. LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression , 2014, Nucleic Acids Res..
[28] H. Chandler. Database , 1985 .
[29] M. Gorospe,et al. Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB , 2013, PLoS genetics.
[30] Marcel E. Dinger,et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs , 2014, Nucleic Acids Res..
[31] Bronwen L. Aken,et al. GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.
[32] Homin K. Lee,et al. Coexpression analysis of human genes across many microarray data sets. , 2004, Genome research.