Spatial mixture modeling of fMRI data

Recently, Everitt and Bullmore [ 1999 ] proposed a mixture model for a test statistic for activation in fMRI data. The distribution of the statistic was divided into two components; one for nonactivated voxels and one for activated voxels. In this framework one can calculate a posterior probability for a voxel being activated, which provides a more natural basis for thresholding the statistic image, than that based on P‐values. In this article, we extend the method of Everitt and Bullmore to account for spatial coherency of activated regions. We achieve this by formulating a model for the activation in a small region of voxels and using this spatial structure when calculating the posterior probability of a voxel being activated. We have investigated several choices of spatial models but find that they all work equally well for brain imaging data. We applied the model to synthetic data from statistical image analysis, a synthetic fMRI data set and to visual stimulation data. Our conclusion is that the method improves the estimation of the activation pattern significantly, compared to the nonspatial model and to smoothing the data with a kernel of FWHM 3 voxels. The difference between FWHM 2 smoothing and our method were more modest. Hum. Brain Mapping 11:233–248, 2000. © 2000 Wiley‐Liss, Inc.

[1]  J B Poline,et al.  Analysis of Individual Positron Emission Tomography Activation Maps by Detection of High Signal-to-Noise-Ratio Pixel Clusters , 1993, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[2]  William H. Press,et al.  Numerical recipes in C , 2002 .

[3]  John Suckling,et al.  Global, voxel, and cluster tests, by theory and permutation, for a difference between two groups of structural MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[4]  C. Heyde,et al.  Quasi-likelihood and its application , 1997 .

[5]  D. Greig,et al.  Exact Maximum A Posteriori Estimation for Binary Images , 1989 .

[6]  Karl J. Friston,et al.  Analysis of fMRI Time-Series Revisited—Again , 1995, NeuroImage.

[7]  Azriel Rosenfeld,et al.  Digital Picture Processing , 1976 .

[8]  L. K. Hansen,et al.  Plurality and Resemblance in fMRI Data Analysis , 1999, NeuroImage.

[9]  William H. Press,et al.  Numerical Recipes in C, 2nd Edition , 1992 .

[10]  Karl J. Friston,et al.  Analysis of functional MRI time‐series , 1994, Human Brain Mapping.

[11]  Joan G. Staniswalis,et al.  Nonparametric Regression Analysis of Longitudinal Data , 1998 .

[12]  Karl J. Friston,et al.  Combining Spatial Extent and Peak Intensity to Test for Activations in Functional Imaging , 1997, NeuroImage.

[13]  C. Mountford Non-linear Fourier time series analysis for human brain mapping by functional magnetic resonance imaging - Discussion , 1997 .

[14]  B. Everitt,et al.  Mixture model mapping of brain activation in functional magnetic resonance images , 1999, Human brain mapping.

[15]  Jonathan D. Cohen,et al.  Improved Assessment of Significant Activation in Functional Magnetic Resonance Imaging (fMRI): Use of a Cluster‐Size Threshold , 1995, Magnetic resonance in medicine.

[16]  E C Wong,et al.  Processing strategies for time‐course data sets in functional mri of the human brain , 1993, Magnetic resonance in medicine.

[17]  William H. Press,et al.  Numerical recipes in C (2nd ed.): the art of scientific computing , 1992 .

[18]  J. Besag On the Statistical Analysis of Dirty Pictures , 1986 .

[19]  Scott L. Zeger,et al.  Non‐linear Fourier Time Series Analysis for Human Brain Mapping by Functional Magnetic Resonance Imaging , 1997 .

[20]  Xavier Descombes,et al.  fMRI Signal Restoration Using a Spatio-Temporal Markov Random Field Preserving Transitions , 1998, NeuroImage.

[21]  Niels V. Hartvig,et al.  PARAMETRIC MODELLING OF FUNCTIONAL MAGNETIC RESONANCE IMAGING DATA , 2000 .

[22]  Karl J. Friston,et al.  A unified statistical approach for determining significant signals in images of cerebral activation , 1996, Human brain mapping.

[23]  Ruben H. Zamar,et al.  Binary-image restoration , 1994 .

[24]  Peter Green,et al.  Markov chain Monte Carlo in Practice , 1996 .

[25]  E. Bullmore,et al.  Statistical methods of estimation and inference for functional MR image analysis , 1996, Magnetic resonance in medicine.

[26]  A K Liu,et al.  Spatiotemporal imaging of human brain activity using functional MRI constrained magnetoencephalography data: Monte Carlo simulations. , 1998, Proceedings of the National Academy of Sciences of the United States of America.