Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review.

Nucleic Acid Testing (NAT) promises rapid, sensitive and specific diagnosis of infectious, inherited and genetic disease. The next generation of diagnostic devices will interrogate the genetic determinants of such conditions at the point-of-care, affording clinicians prompt reliable diagnosis from which to guide more effective treatment. The complex biochemical nature of clinical samples, the low abundance of nucleic acid targets in the majority of clinical samples and existing biosensor technology indicate that some form of nucleic acid amplification will be required to obtain clinically relevant sensitivities from the small samples used in point-of-care testing (POCT). This publication provides an overview and thorough review of existing technologies for nucleic acid amplification. The different methods are compared and their suitability for POCT adaptation are discussed. Current commercial products employing isothermal amplification strategies are also investigated. In conclusion we identify the factors impeding the integration of the methods discussed in fully automated, sample-to-answer POCT devices.

[1]  K. Mullis,et al.  Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. , 1988, Science.

[2]  C Garmendia,et al.  Highly efficient DNA synthesis by the phage phi 29 DNA polymerase , 1989 .

[3]  R. Abramson,et al.  Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[4]  J. Compton,et al.  Nucleic acid sequence-based amplification , 1991, Nature.

[5]  G. Walker,et al.  Strand displacement amplification--an isothermal, in vitro DNA amplification technique. , 1992, Nucleic acids research.

[6]  X. H. Wang,et al.  Detection and direct sequence identification of BCR-ABL mRNA in Ph+ chronic myeloid leukemia. , 1993, Experimental hematology.

[7]  P. Klatser,et al.  Nucleic acid sequence-based amplification (NASBA) for the identification of mycobacteria. , 1993, Journal of general microbiology.

[8]  T. Kievits,et al.  Qualitative and quantitative detection of HIV‐1 RNA by nucleic acid sequence‐based amplification , 1993, AIDS.

[9]  U Landegren,et al.  Padlock probes: circularizing oligonucleotides for localized DNA detection. , 1994, Science.

[10]  E. De Clercq,et al.  Detection of HIV-1 RNA in plasma and serum samples using the NASBA amplification system compared to RNA-PCR. , 1995, Journal of virological methods.

[11]  B. van Gemen,et al.  Application of the NASBA nucleic acid amplification method for the detection of human papillomavirus type 16 E6-E7 transcripts. , 1995, Journal of virological methods.

[12]  M. Uyttendaele,et al.  Detection of Campylobacter jejuni added to foods by using a combined selective enrichment and nucleic acid sequence-based amplification (NASBA) , 1995, Applied and environmental microbiology.

[13]  J. Walboomers,et al.  RNA amplification by nucleic acid sequence-based amplification with an internal standard enables reliable detection of Chlamydia trachomatis in cervical scrapings and urine samples , 1996, Journal of clinical microbiology.

[14]  Y. Gu,et al.  Host DNA can interfere with detection of Borrelia burgdorferi in skin biopsy specimens by PCR , 1996, Journal of clinical microbiology.

[15]  W. Irving,et al.  Serum HCV RNA levels assessed by quantitative NASBA: stability of viral load over time, and lack of correlation with liver disease. The Trent HCV Study Group. , 1996, Journal of hepatology.

[16]  P. Hsieh,et al.  Identification and Characterization of a Thermostable MutS Homolog from Thermus aquaticus(*) , 1996, The Journal of Biological Chemistry.

[17]  A. Heim,et al.  Highly sensitive detection of gene expression of an intronless gene: amplification of mRNA, but not genomic DNA by nucleic acid sequence based amplification (NASBA). , 1998, Nucleic acids research.

[18]  F. Kramer,et al.  Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA. , 1998, Nucleic acids research.

[19]  P. Lizardi,et al.  Mutation detection and single-molecule counting using isothermal rolling-circle amplification , 1998, Nature Genetics.

[20]  U. Landegren,et al.  Signal amplification of padlock probes by rolling circle replication. , 1998, Nucleic acids research.

[21]  Martin F. Polz,et al.  Bias in Template-to-Product Ratios in Multitemplate PCR , 1998, Applied and Environmental Microbiology.

[22]  G. Harvey,et al.  Multiplex polymerase chain reaction for the simultaneous detection of Mycoplasma pneumoniae, Chlamydia pneumoniae, and Chlamydia psittaci in respiratory samples. , 1999, Journal of clinical pathology.

[23]  Brian G. Scrivens,et al.  Strand displacement amplification and homogeneous real-time detection incorporated in a second-generation DNA probe system, BDProbeTecET. , 1999, Clinical chemistry.

[24]  T. Notomi,et al.  Loop-mediated isothermal amplification of DNA. , 2000, Nucleic acids research.

[25]  W Zhang,et al.  Detection of rare DNA targets by isothermal ramification amplification. , 2001, Gene.

[26]  K Watanabe,et al.  Loop-mediated isothermal amplification reaction using a nondenatured template. , 2001, Clinical chemistry.

[27]  T. Hemachudha,et al.  Nucleic-acid sequence based amplification in the rapid diagnosis of rabies , 2001, The Lancet.

[28]  Y. Mori,et al.  Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. , 2001, Biochemical and biophysical research communications.

[29]  C. Fuller,et al.  TempliPhi, phi29 DNA polymerase based rolling circle amplification of templates for DNA sequencing. , 2002, BioTechniques.

[30]  F. Judson,et al.  Evaluation of a Strand Displacement Amplification Assay (BD ProbeTec-SDA) for Detection of Neisseria gonorrhoeae in Urine Specimens , 2002, Journal of Clinical Microbiology.

[31]  [Development of the detection system for Mycobacterium tuberculosis DNA by using the isothermal DNA amplification method ICAN]. , 2002, Rinsho byori. The Japanese journal of clinical pathology.

[32]  Jaap M Middeldorp,et al.  Detection of late pp67-mRNA by NASBA in peripheral blood for the diagnosis of human cytomegalovirus disease in AIDS patients. , 2002, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[33]  B. Deiman,et al.  Characteristics and applications of nucleic acid sequence-based amplification (NASBA) , 2002, Molecular biotechnology.

[34]  T. Notomi,et al.  Accelerated reaction by loop-mediated isothermal amplification using loop primers. , 2002, Molecular and cellular probes.

[35]  E. Simson,et al.  Detection of Chlamydia trachomatis by Isothermal Ramification Amplification Method: a Feasibility Study , 2002, Journal of Clinical Microbiology.

[36]  V. Demidov,et al.  Rolling-circle amplification in DNA diagnostics: the power of simplicity , 2002, Expert review of molecular diagnostics.

[37]  L Birch,et al.  Molecular methods for the assessment of bacterial viability. , 2003, Journal of microbiological methods.

[38]  Takahiro Kanagawa,et al.  Bias and artifacts in multitemplate polymerase chain reactions (PCR). , 2003, Journal of bioscience and bioengineering.

[39]  P. Klapper,et al.  Reliability of Nucleic Acid Amplification Methods for Detection of Chlamydia trachomatis in Urine: Results of the First International Collaborative Quality Control Study among 96 Laboratories , 2003, Journal of Clinical Microbiology.

[40]  Ronald W. Davis,et al.  Multiplexed genotyping with sequence-tagged molecular inversion probes , 2003, Nature Biotechnology.

[41]  [Evaluation of the simultaneous detection system for Chlamydia trachomatis/Neisseria gonorrhoeae DNA by the isothermal and chimeric primer-initiated amplification of nucleic acids (ICAN)]. , 2003, Rinsho byori. The Japanese journal of clinical pathology.

[42]  Kozaburo Hayashi,et al.  Loop-Mediated Isothermal Amplification for Direct Detection of Mycobacterium tuberculosis Complex, M. avium, and M. intracellulare in Sputum Samples , 2003, Journal of Clinical Microbiology.

[43]  Mamone Ja,et al.  TempliPhi: A sequencing template preparation procedure that eliminates overnight cultures and DNA purification. , 2003 .

[44]  D. Rodríguez-Lázaro,et al.  A molecular beacon-based real-time NASBA assay for detection of Mycobacterium avium subsp. paratuberculosis in water and milk. , 2004, FEMS microbiology letters.

[45]  D. D'Souza,et al.  Multiplex Nucleic Acid Sequence-Based Amplification for Simultaneous Detection of Several Enteric Viruses in Model Ready-To-Eat Foods , 2004, Applied and Environmental Microbiology.

[46]  J. Hoorfar,et al.  Practical Considerations in Design of Internal Amplification Controls for Diagnostic PCR Assays , 2004, Journal of Clinical Microbiology.

[47]  Yasuyoshi Mori,et al.  Real-time turbidimetry of LAMP reaction for quantifying template DNA. , 2004, Journal of biochemical and biophysical methods.

[48]  M. Herrler,et al.  Linear mRNA amplification from as little as 5 ng total RNA for global gene expression analysis. , 2004, BioTechniques.

[49]  Eivind Hovig,et al.  Real-time nucleic acid sequence-based amplification in nanoliter volumes. , 2004, Analytical chemistry.

[50]  Yan Xu,et al.  Helicase‐dependent isothermal DNA amplification , 2004, EMBO reports.

[51]  M. Gorgievski-Hrisoho,et al.  Detection of enterovirus RNA in cerebrospinal fluid (CSF) using NucliSens EasyQ Enterovirus assay. , 2005, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[52]  Anne Kopf-Sill,et al.  Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications. , 2005, Clinical chemistry.

[53]  J. Justin Gooding,et al.  Proximity extension of circular DNA aptamers with real-time protein detection , 2005, Nucleic acids research.

[54]  Eivind Hovig,et al.  Parallel nanoliter detection of cancer markers using polymer microchips. , 2005, Lab on a chip.

[55]  E. Isogai,et al.  Detection of Salmonella invA by isothermal and chimeric primer-initiated amplification of nucleic acids (ICAN) in Zambia. , 2005, Comparative immunology, microbiology and infectious diseases.

[56]  Takashi Kawana,et al.  Rapid Diagnosis of Herpes Simplex Virus Infection by a Loop-Mediated Isothermal Amplification Method , 2004, Journal of Clinical Microbiology.

[57]  Katharina Landfester,et al.  Miniemulsion droplets as single molecule nanoreactors for polymerase chain reaction. , 2005, Biomacromolecules.

[58]  T. Notomi,et al.  Rapid Diagnostic Method for Detection of Mumps Virus Genome by Loop-Mediated Isothermal Amplification , 2005, Journal of Clinical Microbiology.

[59]  J. Meng,et al.  Use of Ramification Amplification Assay for Detection of Escherichia coli O157:H7 and Other E. coli Shiga Toxin-Producing Strains , 2005, Journal of Clinical Microbiology.

[60]  T. Notomi,et al.  A simple method for the detection of measles virus genome by loop‐mediated isothermal amplification (LAMP) , 2005, Journal of medical virology.

[61]  Xuejun Ma,et al.  Rapid and Sensitive Detection of Severe Acute Respiratory Syndrome Coronavirus by Rolling Circle Amplification , 2005, Journal of Clinical Microbiology.

[62]  Olaf Piepenburg,et al.  DNA Detection Using Recombination Proteins , 2006, PLoS biology.

[63]  Yi Guan,et al.  Sensitive and inexpensive molecular test for falciparum malaria: detecting Plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. , 2006, Clinical chemistry.

[64]  Wandi Zhang,et al.  Molecular Zipper: a fluorescent probe for real-time isothermal DNA amplification , 2006, Nucleic Acids Research.

[65]  G. Whitesides The origins and the future of microfluidics , 2006, Nature.

[66]  P. Herdewijn,et al.  Molecular Dipstick Test for Diagnosis of Sleeping Sickness , 2006, Journal of Clinical Microbiology.

[67]  H. Jeske,et al.  Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. , 2006, Journal of virological methods.

[68]  Tsugunori Notomi,et al.  Development of H5-RT-LAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection. , 2006, Vaccine.

[69]  T. Horii,et al.  Rapid detection of fluoroquinolone resistance by isothermal chimeric primer-initiated amplification of nucleic acids from clinical isolates of Neisseria gonorrhoeae. , 2006, Journal of microbiological methods.

[70]  T. Tomonaga,et al.  Rapid detection of metastasis of gastric cancer using reverse transcription loop‐mediated isothermal amplification , 2006, International journal of cancer.

[71]  Ronald W. Davis,et al.  Connector Inversion Probe Technology: A Powerful One-Primer Multiplex DNA Amplification System for Numerous Scientific Applications , 2007, PLoS ONE.

[72]  Investigation of the molecular mechanism of ICAN, a novel gene amplification method. , 2007, Journal of biochemistry.

[73]  G. Gilbert,et al.  A practical method for subtyping of Streptococcus agalactiae serotype III, of human origin, using rolling circle amplification. , 2007, Journal of microbiological methods.

[74]  Y. Hayashizaki,et al.  Use of a competitive probe in assay design for genotyping of the UGT1A1 *28 microsatellite polymorphism by the smart amplification process. , 2007, BioTechniques.

[75]  Mats Nilsson,et al.  Homogeneous amplified single-molecule detection: Characterization of key parameters. , 2007, Analytical biochemistry.

[76]  Yoshihide Hayashizaki,et al.  Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology , 2007, Nature Methods.

[77]  A. Taniguchi,et al.  Detection of six single-nucleotide polymorphisms associated with rheumatoid arthritis by a loop-mediated isothermal amplification method and an electrochemical DNA chip. , 2007, Analytical chemistry.

[78]  D. Verloo,et al.  Validation of a PCR-Oligochromatography Test for Detection of Trypanozoon Parasites in a Multicenter Collaborative Trial , 2007, Journal of Clinical Microbiology.

[79]  H. Kong,et al.  Development of a novel one-tube isothermal reverse transcription thermophilic helicase-dependent amplification platform for rapid RNA detection. , 2007, The Journal of molecular diagnostics : JMD.

[80]  H. Goossens,et al.  Development of Real-Time Multiplex Nucleic Acid Sequence-Based Amplification for Detection of Mycoplasma pneumoniae, Chlamydophila pneumoniae, and Legionella spp. in Respiratory Specimens , 2007, Journal of Clinical Microbiology.

[81]  H. Nakagawa,et al.  Loop‐mediated isothermal amplification method for detection of human papillomavirus type 6, 11, 16, and 18 , 2007, Journal of medical virology.

[82]  A. Simon,et al.  Sensitive Commercial NASBA Assay for the Detection of Respiratory Syncytial Virus in Clinical Specimen , 2007, PloS one.

[83]  I. Kato,et al.  Highly efficient isothermal DNA amplification system using three elements of 5'-DNA-RNA-3' chimeric primers, RNaseH and strand-displacing DNA polymerase. , 2007, Journal of biochemistry.

[84]  S. Corden,et al.  Dry cotton or flocked respiratory swabs as a simple collection technique for the molecular detection of respiratory viruses using real-time NASBA. , 2008, Journal of virological methods.

[85]  E. Matovu,et al.  African trypanosomiasis: Sensitive and rapid detection of the sub-genus Trypanozoon by loop-mediated isothermal amplification (LAMP) of parasite DNA , 2007, International Journal for Parasitology.

[86]  H. Goossens,et al.  Evaluation of different nucleic acid amplification techniques for the detection of M. pneumoniae, C. pneumoniae and Legionella spp. in respiratory specimens from patients with community-acquired pneumonia. , 2008, Journal of microbiological methods.

[87]  H. Kong,et al.  Application of isothermal helicase-dependent amplification with a disposable detection device in a simple sensitive stool test for toxigenic Clostridium difficile. , 2008, The Journal of molecular diagnostics : JMD.

[88]  Bryan Lincoln,et al.  Integrated microfluidic tmRNA purification and real-time NASBA device for molecular diagnostics. , 2008, Lab on a chip.

[89]  J. Mahony Detection of Respiratory Viruses by Molecular Methods , 2008, Clinical Microbiology Reviews.

[90]  Practical Method for Detection and Identification of Candida, Aspergillus, and Scedosporium spp. by Use of Rolling-Circle Amplification , 2008, Journal of Clinical Microbiology.

[91]  J. Ongerth,et al.  Sensitive and specific detection of Cryptosporidium species in PCR-negative samples by loop-mediated isothermal DNA amplification and confirmation of generated LAMP products by sequencing. , 2008, Veterinary parasitology.

[92]  Bertrand Lemieux,et al.  Identification of Staphylococcus aureus and Determination of Methicillin Resistance Directly from Positive Blood Cultures by Isothermal Amplification and a Disposable Detection Device , 2008, Journal of Clinical Microbiology.

[93]  Bin Wang,et al.  Hyperbranched rolling circle amplification as a rapid and sensitive method for species identification within the Cryptococcus species complex , 2008, Electrophoresis.

[94]  I. Endo,et al.  Rapid screening assay for KRAS mutations by the modified smart amplification process. , 2008, The Journal of molecular diagnostics : JMD.

[95]  Hiroyuki Fujita,et al.  Loop-mediated isothermal amplification of a single DNA molecule in polyacrylamide gel-based microchamber , 2008, Biomedical microdevices.

[96]  O. Laeyendecker,et al.  Evaluation of multiplex real-time PCR for detection of Haemophilus ducreyi, Treponema pallidum, herpes simplex virus type 1 and 2 in the diagnosis of genital ulcer disease in the Rakai District, Uganda , 2008, Sexually Transmitted Infections.

[97]  P. Gill,et al.  Nucleic Acid Isothermal Amplification Technologies—A Review , 2008, Nucleosides, nucleotides & nucleic acids.

[98]  C. Ginocchio,et al.  Rapid Real-Time Nucleic Acid Sequence-Based Amplification-Molecular Beacon Platform To Detect Fungal and Bacterial Bloodstream Infections , 2009, Journal of Clinical Microbiology.

[99]  G. Lubega,et al.  Nucleic Acid Sequence-Based Amplification with Oligochromatography for Detection of Trypanosoma brucei in Clinical Samples , 2009, Journal of Clinical Microbiology.

[100]  G. Vernet,et al.  Evaluation of real-time nucleic acid sequence-based amplification for detection of Chikungunya virus in clinical samples. , 2009, Journal of medical microbiology.

[101]  J. Logan,et al.  Real-time PCR : current technology and applications , 2009 .

[102]  Taku Murakami,et al.  Sensitive isothermal detection of nucleic-acid sequence by primer generation–rolling circle amplification , 2008, Nucleic acids research.

[103]  M. Bauer,et al.  Truncated Human Cytidylate-Phosphate-Deoxyguanylate-Binding Protein for Improved Nucleic Acid Amplification Technique-Based Detection of Bacterial Species in Human Samples , 2009, Journal of Clinical Microbiology.

[104]  Weiling Fu,et al.  Real-time monitoring of the strand displacement amplification (SDA) of human cytomegalovirus by a new SDA-piezoelectric DNA sensor system. , 2009, Biosensors & bioelectronics.

[105]  Yasuhiko Sasaki,et al.  Semi-automated bacterial spore detection system with micro-fluidic chips for aerosol collection, spore treatment and ICAN DNA detection. , 2009, Biosensors & bioelectronics.

[106]  Frank F Bier,et al.  Helicase dependent OnChip-amplification and its use in multiplex pathogen detection. , 2009, Clinica chimica acta; international journal of clinical chemistry.

[107]  Yoshihide Hayashizaki,et al.  Tail variation of the folding primer affects the SmartAmp2 process differently. , 2009, Biochemical and biophysical research communications.

[108]  Yonghao Zhang,et al.  Microfluidic DNA amplification--a review. , 2009, Analytica chimica acta.

[109]  M. Pfeilstöcker,et al.  Preanalytic removal of human DNA eliminates false signals in general 16S rDNA PCR monitoring of bacterial pathogens in blood. , 2009, Comparative immunology, microbiology and infectious diseases.

[110]  Kiyoshi Inoue,et al.  Development of a loop-mediated isothermal amplification assay for sensitive and rapid detection of Campylobacter fetus. , 2009, Veterinary microbiology.

[111]  Hai-Qing Gong,et al.  Microfluidic devices harboring unsealed reactors for real-time isothermal helicase-dependent amplification , 2009, Microfluidics and nanofluidics.

[112]  R. Vogel,et al.  Detection of Fusarium graminearum DNA using a loop-mediated isothermal amplification (LAMP) assay. , 2010, International journal of food microbiology.

[113]  Y. Hayashizaki,et al.  Usefulness of peptide nucleic acid (PNA)-clamp smart amplification process version 2 (SmartAmp2) for clinical diagnosis of KRAS codon 12 mutations in lung adenocarcinoma: comparison of PNA-clamp SmartAmp2 and PCR-related methods. , 2010, The Journal of molecular diagnostics : JMD.

[114]  G. S. de Hoog,et al.  Rapid detection of pathogenic fungi using loop-mediated isothermal amplification, exemplified by Fonsecaea agents of chromoblastomycosis. , 2010, Journal of microbiological methods.

[115]  Tsuyoshi Fukuda,et al.  Simple and accurate determination of CYP2D6 gene copy number by a loop-mediated isothermal amplification method and an electrochemical DNA chip. , 2010, Clinica chimica acta; international journal of clinical chemistry.

[116]  Lutz Riegger,et al.  Lab-on-a-chip solutions designed for being operated on standard laboratory instruments , 2010 .

[117]  Molecular Diagnostics of Infectious Diseases , 2010 .

[118]  Jung-Hwan Park,et al.  Bacteria adsorption on hydrophilic surfaces for the sensitive detection of pathogenic bacteria using a single tube chamber system. , 2010, Biosensors & bioelectronics.

[119]  Bertrand Lemieux,et al.  Nucleic acid assay system for tier II laboratories and moderately complex clinics to detect HIV in low-resource settings. , 2010, The Journal of infectious diseases.

[120]  Y. Lau,et al.  Specific, Sensitive, and Rapid Diagnosis of Active Toxoplasmosis by a Loop-Mediated Isothermal Amplification Method Using Blood Samples from Patients , 2010, Journal of Clinical Microbiology.

[121]  J. Kong,et al.  Loop-mediated isothermal amplification integrated on microfluidic chips for point-of-care quantitative detection of pathogens. , 2010, Analytical chemistry.

[122]  T. Yoshikawa,et al.  Direct detection of human herpesvirus 6 DNA in serum by variant specific loop-mediated isothermal amplification in hematopoietic stem cell transplant recipients. , 2010, Journal of virological methods.

[123]  B. Branson,et al.  2010 HIV Diagnostics Conference , 2010, Expert review of anti-infective therapy.

[124]  Ben Hatano,et al.  LAMP using a disposable pocket warmer for anthrax detection, a highly mobile and reliable method for anti-bioterrorism. , 2010, Japanese journal of infectious diseases.

[125]  C. Burri,et al.  Comparative Detection of Trypanosomal DNA by Loop-Mediated Isothermal Amplification and PCR from Flinders Technology Associates Cards Spotted with Patient Blood , 2010, Journal of Clinical Microbiology.

[126]  T. Yoshikawa,et al.  Heat denaturation increases the sensitivity of the cytomegalovirus loop‐mediated isothermal amplification method , 2010, Microbiology and immunology.

[127]  S. Takashiba,et al.  Rapid detection of mecA and spa by the loop‐mediated isothermal amplification (LAMP) method , 2010, Letters in applied microbiology.

[128]  Y. Hayashizaki,et al.  Correlation of axillary osmidrosis to a SNP in the ABCC11 gene determined by the Smart Amplification Process (SmartAmp) method. , 2010, Journal of plastic, reconstructive & aesthetic surgery : JPRAS.

[129]  W. Preiser,et al.  NucliSens EasyQ HIV-1 V1.2 system: Detection of human plasma-derived background signal. , 2010, Journal of virological methods.

[130]  Guodong Liu,et al.  Lateral flow nucleic acid biosensor for Cu2+ detection in aqueous solution with high sensitivity and selectivity. , 2010, Chemical communications.

[131]  Jaephil Do,et al.  An integrated disposable device for DNA extraction and helicase dependent amplification , 2010, Biomedical microdevices.

[132]  Roland Zengerle,et al.  Microfluidic lab-on-a-foil for nucleic acid analysis based on isothermal recombinase polymerase amplification (RPA). , 2010, Lab on a chip.

[133]  D. Qiu,et al.  Evaluation of a Loop-Mediated Isothermal Amplification Method Using Fecal Specimens for Differential Detection of Taenia Species from Humans , 2010, Journal of Clinical Microbiology.

[134]  J. Inácio,et al.  Differentiation of Cryptococcus neoformans varieties and Cryptococcus gattii using CAP59-based loop-mediated isothermal DNA amplification. , 2010, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[135]  L. Lau,et al.  Development of multiplex nucleic acid sequence-based amplification for detection of human respiratory tract viruses. , 2010, Journal of virological methods.

[136]  Xiaoan Cao,et al.  Loop-mediated isothermal amplification assay targeting the omp25 gene for rapid detection of Brucella spp. , 2011, Molecular and cellular probes.

[137]  Preeti Pancholi,et al.  Molecular methods and platforms for infectious diseases testing a review of FDA-approved and cleared assays. , 2011, The Journal of molecular diagnostics : JMD.

[138]  Direct genotyping of Cytochrome P450 2A6 whole gene deletion from human blood samples by the SmartAmp method. , 2011, Clinica chimica acta; international journal of clinical chemistry.

[139]  M. Shields,et al.  Development and clinical validation of a loop-mediated isothermal amplification method for the rapid detection of Neisseria meningitidis. , 2011, Diagnostic microbiology and infectious disease.

[140]  Yi Zhang,et al.  Advances in microfluidic PCR for point-of-care infectious disease diagnostics. , 2011, Biotechnology advances.

[141]  H. Kong,et al.  Multiple strategies to improve sensitivity, speed and robustness of isothermal nucleic acid amplification for rapid pathogen detection , 2011, BMC biotechnology.

[142]  Y. Hayashizaki,et al.  Optimization of turn-back primers in isothermal amplification , 2011, Nucleic acids research.

[143]  T. Kirikae,et al.  Loop-mediated isothermal amplification assays for identification of antiseptic- and methicillin-resistant Staphylococcus aureus. , 2011, Journal of microbiological methods.

[144]  Wei Jin,et al.  Integrated glass microdevice for nucleic acid purification, loop-mediated isothermal amplification, and online detection. , 2011, Analytical chemistry.

[145]  Peter J. Asiello,et al.  Miniaturized isothermal nucleic acid amplification, a review. , 2011, Lab on a chip.

[146]  G. Bloemberg,et al.  Broad-range 16S rRNA gene polymerase chain reaction for diagnosis of culture-negative bacterial infections. , 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[147]  N. Nguyen,et al.  An investigation on the mechanism of droplet formation in a microfluidic T-junction , 2011 .

[148]  Mobile and accurate detection system for infection by the 2009 pandemic influenza A (H1N1) virus with a pocket‐warmer reverse‐transcriptase loop‐mediated isothermal amplification , 2011, Journal of medical virology.

[149]  Takehiko Kitamori,et al.  Single-molecule DNA patterning and detection by padlock probing and rolling circle amplification in microchannels for analysis of small sample volumes. , 2011, Analytical chemistry.

[150]  F. Akiyama,et al.  Intraoperative molecular assay for sentinel lymph node metastases in early stage breast cancer , 2011, Cancer.

[151]  K. Morita,et al.  An Updated Loop-Mediated Isothermal Amplification Method for Rapid Diagnosis of H5N1 Avian Influenza Viruses , 2011, Tropical medicine and health.

[152]  D. Spandidos,et al.  Use of loop-mediated isothermal amplification of DNA for the rapid detection of Mycobacterium tuberculosis in clinical specimens , 2011, European Journal of Clinical Microbiology & Infectious Diseases.

[153]  G. S. de Hoog,et al.  Rapid identification of fungal pathogens by rolling circle amplification using Fonsecaea as a model , 2011, Mycoses.

[154]  Kelvin J. Liu,et al.  A surface topography assisted droplet manipulation platform for biomarker detection and pathogen identification. , 2011, Lab on a chip.

[155]  R. Vijayaraghavan,et al.  Development and Evaluation of Reverse Transcription Loop-Mediated Isothermal Amplification Assay for Rapid and Real-Time Detection of the Swine-Origin Influenza A H1N1 Virus , 2011, The Journal of Molecular Diagnostics.

[156]  Rustem F Ismagilov,et al.  Digital isothermal quantification of nucleic acids via simultaneous chemical initiation of recombinase polymerase amplification reactions on SlipChip. , 2011, Analytical chemistry.

[157]  Yang Liu,et al.  tuberculosis detection via rolling circle amplification. , 2011, Analytical methods : advancing methods and applications.

[158]  C. Eckert,et al.  Evaluation of a Loop-Mediated Isothermal Amplification Assay for Diagnosis of Clostridium difficile Infections , 2011, Journal of Clinical Microbiology.

[159]  Deirdre L Church,et al.  HIV-1 viral diversity and its implications for viral load testing: review of current platforms. , 2011, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.