Ultraconserved Enhancers Are Required for Normal Development
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Tyler H. Garvin | D. Dickel | A. Visel | J. Rubenstein | L. Pennacchio | V. Afzal | J. Akiyama | I. Plajzer-Frick | Marco Osterwalder | I. Barozzi | Brandon J. Mannion | Quan T. Pham | Anne Harrington | Elizabeth Lee | yoko fukuda-yuzawa | Yiwen Zhu | Ramon Pla | C. Pickle | Anne N. Harrington | A. Ypsilanti | Yupar S. Khin | Momoe Kato | Yoko Fukuda-Yuzawa | B. Mannion | M. Osterwalder | Veena Afzal
[1] S. Durinck,et al. Single-cell RNA sequencing identifies distinct mouse medial ganglionic eminence cell types , 2017, Scientific Reports.
[2] M. Schaub,et al. SC3 - consensus clustering of single-cell RNA-Seq data , 2016, Nature Methods.
[3] Bo Wang,et al. Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning , 2016, Nature Methods.
[4] Axel Visel,et al. Progressive Loss of Function in a Limb Enhancer during Snake Evolution , 2016, Cell.
[5] Tyler H. Garvin,et al. Genome-wide compendium and functional assessment of in vivo heart enhancers , 2016, Nature Communications.
[6] Jeffrey A. Golden,et al. Developmental interneuron subtype deficits after targeted loss of Arx , 2016, BMC Neuroscience.
[7] J. Richardson,et al. MouseMine: a new data warehouse for MGI , 2015, Mammalian Genome.
[8] P. Linsley,et al. MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data , 2015, Genome Biology.
[9] Evan Z. Macosko,et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets , 2015, Cell.
[10] J. Golden,et al. ARX regulates cortical intermediate progenitor cell expansion and upper layer neuron formation through repression of Cdkn1c. , 2015, Cerebral cortex.
[11] D. Karolchik,et al. The UCSC Genome Browser database: 2016 update , 2015, bioRxiv.
[12] J. Rubenstein,et al. NPAS1 Represses the Generation of Specific Subtypes of Cortical Interneurons , 2014, Neuron.
[13] Paul Theodor Pyl,et al. HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[14] M. Guindani,et al. Functional analysis of limb transcriptional enhancers in the mouse , 2014, Evolution & development.
[15] Boris Lenhard,et al. The mystery of extreme non-coding conservation , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[16] R. Jaenisch,et al. One-Step Generation of Mice Carrying Reporter and Conditional Alleles by CRISPR/Cas-Mediated Genome Engineering , 2013, Cell.
[17] Rudolf Jaenisch,et al. One-Step Generation of Mice Carrying Mutations in Multiple Genes by CRISPR/Cas-Mediated Genome Engineering , 2013, Cell.
[18] James E. DiCarlo,et al. RNA-Guided Human Genome Engineering via Cas9 , 2013, Science.
[19] Hani Z. Girgis,et al. A High-Resolution Enhancer Atlas of the Developing Telencephalon , 2013, Cell.
[20] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[21] Kirby D. Johnson,et al. Cis-element mutated in GATA2-dependent immunodeficiency governs hematopoiesis and vascular integrity. , 2012, The Journal of clinical investigation.
[22] Bronwen L. Aken,et al. GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.
[23] Kevin W Eliceiri,et al. NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.
[24] S. Nelson,et al. A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex , 2011, Neuron.
[25] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[26] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[27] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[28] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[29] J. Hirschhorn,et al. Ultraconserved Elements: Analyses of Dosage Sensitivity, Motifs and Boundaries , 2008, Genetics.
[30] G. Bejerano,et al. Dispensability of mammalian DNA. , 2008, Genome research.
[31] J. Rubenstein,et al. Arx Is a Direct Target of Dlx2 and Thereby Contributes to the Tangential Migration of GABAergic Interneurons , 2008, The Journal of Neuroscience.
[32] A. Visel,et al. Ultraconservation identifies a small subset of extremely constrained developmental enhancers , 2008, Nature Genetics.
[33] Axel Visel,et al. Deletion of Ultraconserved Elements Yields Viable Mice , 2007, PLoS biology.
[34] J. Rubenstein,et al. Inactivation of Arx, the Murine Ortholog of the X-Linked Lissencephaly with Ambiguous Genitalia Gene, Leads to Severe Disorganization of the Ventral Telencephalon with Impaired Neuronal Migration and Differentiation , 2007, The Journal of Neuroscience.
[35] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[36] Alan M. Moses,et al. In vivo enhancer analysis of human conserved non-coding sequences , 2006, Nature.
[37] J. Gécz,et al. ARX: a gene for all seasons. , 2006, Current opinion in genetics & development.
[38] David Haussler,et al. The UCSC Known Genes , 2006, Bioinform..
[39] Thomas Lengauer,et al. ROCR: visualizing classifier performance in R , 2005, Bioinform..
[40] Tatiana A. Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[41] Boris Lenhard,et al. Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes , 2004, BMC Genomics.
[42] D. Haussler,et al. Ultraconserved Elements in the Human Genome , 2004, Science.
[43] Ahmed Mansouri,et al. Opposing actions of Arx and Pax4 in endocrine pancreas development. , 2003, Genes & development.
[44] W. Dobyns,et al. Mutation of ARX causes abnormal development of forebrain and testes in mice and X-linked lissencephaly with abnormal genitalia in humans , 2002, Nature Genetics.
[45] Jacqueline N. Crawley,et al. What's Wrong With My Mouse?: Behavioral Phenotyping of Transgenic and Knockout Mice , 2000 .
[46] Hans-Peter Kriegel,et al. A Density-Based Algorithm for Discovering Clusters in Large Spatial Databases with Noise , 1996, KDD.
[47] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[48] I. Ferrer,et al. The development of parvalbumin-immunoreactivity in the neocortex of the mouse. , 1994, Brain research. Developmental brain research.
[49] L. Butcher,et al. Postnatal development of cholinergic neurons in the rat: I. Forebrain , 1991, Brain Research Bulletin.
[50] J. Rossant,et al. Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice. , 1989, Development.
[51] J. Adams. Heavy metal intensification of DAB-based HRP reaction product. , 1981, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.