Segmentation of fMRI using pulse-coupled neural network with kernel PCA

The functional magnetic resonance imaging (fMRI) is an advanced medical imaging technique based on blood oxygen level dependence (BOLD), which has the higher time and the spatial resolution. Because the BOLD-fMRI signal changes only about 0.5-2%, how to examine and locate the functional activation signal from those pictures with low signal to noise ratio accurately and reliably is the open question. An image segmentation algorithm based on pulse-coupled neural network with kernel principal component analysis(PCA) is presented in this paper. The kernel PCA enables us to extract nonlinear features and remove outliers in data vectors and achieve dimension reduction. After that, a new image segmentation approach based on pulse coupled neural network (PCNN) is presented. PCNN dynamically evaluates similarity between any two samples owing to the outstanding centralization characteristic based on the vicinity in space and the comparability of brightness. It has higher accuracy and faster performance than those classical clustering algorithms. Experimental results with fMRI images have shown the effectiveness of the proposed algorithm.

[1]  S J Riederer,et al.  Current technical development of magnetic resonance imaging. , 2000, IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society.

[2]  Michael Unser,et al.  Statistical analysis of functional MRI data in the wavelet domain , 1998, IEEE Transactions on Medical Imaging.

[3]  Lawrence Sirovich,et al.  Application of the Karhunen-Loeve Procedure for the Characterization of Human Faces , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[4]  K. Zilles,et al.  The neural correlates of person familiarity. A functional magnetic resonance imaging study with clinical implications. , 2001, Brain : a journal of neurology.

[5]  Teuvo Kohonen,et al.  Self-Organization and Associative Memory, Second Edition , 1988, Springer Series in Information Sciences.

[6]  Karl J. Friston,et al.  A unified statistical approach for determining significant signals in images of cerebral activation , 1996, Human brain mapping.

[7]  John L. Johnson,et al.  PCNN models and applications , 1999, IEEE Trans. Neural Networks.

[8]  Yuzo Hirai,et al.  Dynamics of selective recall in an associative memory model with one-to-many associations , 1999, IEEE Trans. Neural Networks.

[9]  U Klose,et al.  Functional MRI of cerebral activation during encoding and retrieval of words , 1999, Human brain mapping.

[10]  James C. Bezdek,et al.  Pattern Recognition with Fuzzy Objective Function Algorithms , 1981, Advanced Applications in Pattern Recognition.

[11]  Karl J. Friston,et al.  Statistical parametric maps in functional imaging: A general linear approach , 1994 .

[12]  Jason M. Kinser,et al.  Image Processing using Pulse-Coupled Neural Networks , 1998, Perspectives in Neural Computing.

[13]  P. Benson,et al.  Towards a functional neuroanatomy of self processing: effects of faces and words. , 2000, Brain research. Cognitive brain research.

[14]  Christian A. Rees,et al.  Systematic variation in gene expression patterns in human cancer cell lines , 2000, Nature Genetics.

[15]  Reinhard Eckhorn,et al.  Feature Linking via Synchronization among Distributed Assemblies: Simulations of Results from Cat Visual Cortex , 1990, Neural Computation.

[16]  Perry D. Moerland,et al.  An On-Line EM Algorithm Applied to Kernel PCA , 2000 .

[17]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[18]  Bernhard Schölkopf,et al.  Nonlinear Component Analysis as a Kernel Eigenvalue Problem , 1998, Neural Computation.

[19]  Rodney M. Goodman,et al.  Recurrent correlation associative memories , 1991, IEEE Trans. Neural Networks.

[20]  J J Hopfield,et al.  Neural networks and physical systems with emergent collective computational abilities. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Gunnar Rätsch,et al.  Kernel PCA and De-Noising in Feature Spaces , 1998, NIPS.

[22]  Alfonso Valencia,et al.  A hierarchical unsupervised growing neural network for clustering gene expression patterns , 2001, Bioinform..