High-throughput validation of ceRNA regulatory networks

[1]  D. Wheeler,et al.  Genomic analysis of hepatoblastoma identifies distinct molecular and prognostic subgroups , 2017, Hepatology.

[2]  Vikram Agarwal,et al.  Impact of MicroRNA Levels, Target-Site Complementarity, and Cooperativity on Competing Endogenous RNA-Regulated Gene Expression , 2016, Molecular cell.

[3]  John T. Powers,et al.  Multiple mechanisms disrupt the let-7 microRNA family in neuroblastoma , 2016, Nature.

[4]  Kotb Abdelmohsen,et al.  LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR , 2016, Nucleic acids research.

[5]  Yan Cui,et al.  SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions , 2015, Nucleic Acids Res..

[6]  Nuno A. Fonseca,et al.  Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants , 2015, Nucleic Acids Res..

[7]  Steven J. M. Jones,et al.  The Molecular Taxonomy of Primary Prostate Cancer , 2015, Cell.

[8]  Thomas M. Keane,et al.  The BRAF Pseudogene Functions as a Competitive Endogenous RNA and Induces Lymphoma In Vivo , 2015, Cell.

[9]  A. Mele,et al.  Hepatitis C Virus RNA Functionally Sequesters miR-122 , 2015, Cell.

[10]  Michael Q. Zhang,et al.  Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit , 2015, Proceedings of the National Academy of Sciences.

[11]  Prahlad T. Ram,et al.  Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks , 2015, Genome research.

[12]  Rob Phillips,et al.  Promoter architecture dictates cell-to-cell variability in gene expression , 2014, Science.

[13]  T. Golub The Somatic Cancer Genome , 2014 .

[14]  Vikram Agarwal,et al.  Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance. , 2014, Molecular cell.

[15]  Phillip A Sharp,et al.  Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition. , 2014, Molecular cell.

[16]  P. Pandolfi,et al.  The multilayered complexity of ceRNA crosstalk and competition , 2014, Nature.

[17]  Hui Zhou,et al.  starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data , 2013, Nucleic Acids Res..

[18]  Julian Downward,et al.  Hmga2 functions as a competing endogenous RNA to promote lung cancer progression , 2013, Nature.

[19]  N. Perrone-Bizzozero,et al.  Degradation of high affinity HuD targets releases Kv1.1 mRNA from miR-129 repression by mTORC1 , 2013, The Journal of cell biology.

[20]  R. Zecchina,et al.  Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments , 2013, Proceedings of the National Academy of Sciences.

[21]  J. Kjems,et al.  Natural RNA circles function as efficient microRNA sponges , 2013, Nature.

[22]  Sebastian D. Mackowiak,et al.  Circular RNAs are a large class of animal RNAs with regulatory potency , 2013, Nature.

[23]  Steven J. M. Jones,et al.  Comprehensive molecular portraits of human breast tumours , 2013 .

[24]  C. Fabián Flores-Jasso,et al.  Argonaute Divides Its RNA Guide into Domains with Distinct Functions and RNA-Binding Properties , 2012, Cell.

[25]  Subbaya Subramanian,et al.  Competing endogenous RNA database , 2012, Bioinformation.

[26]  A. Butte,et al.  Leveraging models of cell regulation and GWAS data in integrative network-based association studies , 2012, Nature Genetics.

[27]  Steven J. M. Jones,et al.  Comprehensive molecular portraits of human breast tumors , 2012, Nature.

[28]  Eugen C. Buehler,et al.  siRNA off-target effects in genome-wide screens identify signaling pathway members , 2012, Scientific Reports.

[29]  A. English,et al.  Limited availability of ZBP1 restricts axonal mRNA localization and nerve regeneration capacity , 2011, The EMBO journal.

[30]  Ferdinando Di Cunto,et al.  Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs , 2011, Cell.

[31]  Xuerui Yang,et al.  An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma , 2011, Cell.

[32]  D. Cacchiarelli,et al.  A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA , 2011, Cell.

[33]  Howard Y. Chang,et al.  Molecular mechanisms of long noncoding RNAs. , 2011, Molecular cell.

[34]  Carme Camps,et al.  microRNA-associated progression pathways and potential therapeutic targets identified by integrated mRNA and microRNA expression profiling in breast cancer. , 2011, Cancer research.

[35]  P. Pandolfi,et al.  A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? , 2011, Cell.

[36]  Howard Y. Chang,et al.  Extensive and coordinated transcription of noncoding RNAs within cell cycle promoters , 2011, Nature Genetics.

[37]  Yaou Zhang,et al.  Expression of Versican 3′-Untranslated Region Modulates Endogenous MicroRNA Functions , 2010, PloS one.

[38]  D. Etemadmoghadam,et al.  Profiling the cancer genome. , 2010, Annual review of genomics and human genetics.

[39]  C. Sander,et al.  Integrative genomic profiling of human prostate cancer. , 2010, Cancer cell.

[40]  P. Pandolfi,et al.  A coding-independent function of gene and pseudogene mRNAs regulates tumour biology , 2010, Nature.

[41]  J. Steitz,et al.  Down-Regulation of a Host MicroRNA by a Herpesvirus saimiri Noncoding RNA , 2010, Science.

[42]  Mariano J. Alvarez,et al.  A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers , 2010, Molecular systems biology.

[43]  Jiayi Wang,et al.  CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer , 2010, Nucleic acids research.

[44]  C. Sander,et al.  Target mRNA abundance dilutes microRNA and siRNA activity , 2010, Molecular systems biology.

[45]  J. Uhm,et al.  The transcriptional network for mesenchymal transformation of brain tumours , 2010 .

[46]  C. Croce Causes and consequences of microRNA dysregulation in cancer , 2009, Nature Reviews Genetics.

[47]  Mariano J. Alvarez,et al.  Genome-wide Identification of Post-translational Modulators of Transcription Factor Activity in Human B-Cells , 2009, Nature Biotechnology.

[48]  C. Croce,et al.  MicroRNAs in Cancer. , 2009, Annual review of medicine.

[49]  M. Todesco,et al.  Target mimicry provides a new mechanism for regulation of microRNA activity , 2007, Nature Genetics.

[50]  T. Golub,et al.  A method for high-throughput gene expression signature analysis , 2006, Genome Biology.

[51]  Adam A. Margolin,et al.  Reverse engineering of regulatory networks in human B cells , 2005, Nature Genetics.

[52]  G. Marsaglia,et al.  Evaluating Kolmogorov's distribution , 2003 .

[53]  Kristian Helin,et al.  Profiling cancer. , 2003, Current opinion in cell biology.

[54]  Igor Vajda,et al.  Estimation of the Information by an Adaptive Partitioning of the Observation Space , 1999, IEEE Trans. Inf. Theory.