Generalized ensemble simulations for complex systems

Abstract The most efficient MC weights for the calculation of physical, canonical expectation values are not necessarily those of the canonical ensemble. The use of suitably generalized ensembles can lead to a much faster convergence of the simulation. Although not realized by nature, these ensembles can be implemented on computers. In recent years generalized ensembles have in particular been studied for the simulation of complex systems. For these systems it is typical that conflicting constraints lead to free energy barriers, which fragment the configuration space. Examples of major interest are spin glasses and proteins. In my overview I first comment on the strengths and weaknesses of a few major approaches, multicanonical simulations, transition variable methods, and parallel tempering. Subsequently, two applications are presented: a new analysis of the Parisi overlap distribution for the 3D Edwards–Anderson Ising spin glass and the helix-coil transition of amino-acid homo-oligomers.

[1]  Sauer,et al.  Multicanonical multigrid Monte Carlo method. , 1994, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[2]  Wolfhard Janke,et al.  MULTIOVERLAP SIMULATIONS OF THE 3D EDWARDS-ANDERSON ISING SPIN GLASS , 1998 .

[3]  Y. Okamoto,et al.  Molecular dynamics, Langevin, and hybrid Monte Carlo simulations in multicanonical ensemble , 1996, physics/9710018.

[4]  Berg,et al.  Multicanonical ensemble: A new approach to simulate first-order phase transitions. , 1992, Physical review letters.

[5]  Jian-Sheng Wang Is the broad histogram random walk dynamics correct? , 1999 .

[6]  Y. Okamoto,et al.  Finite-size scaling of helix–coil transitions in poly-alanine studied by multicanonical simulations , 1998 .

[7]  H. Herrmann,et al.  Broad Histogram Method , 1996, cond-mat/9610041.

[8]  Th. Lippert,et al.  Multicanonical hybrid Monte Carlo algorithm: Boosting simulations of compact QED , 1998, hep-lat/9809160.

[9]  A D Bruce,et al.  A study of the multi-canonical Monte Carlo method , 1995 .

[10]  K. Hukushima,et al.  Exchange Monte Carlo Method and Application to Spin Glass Simulations , 1995, cond-mat/9512035.

[11]  J. D. Muñoz,et al.  Broad Histogram Method for Continuous Systems : The XY-Model , 1998, cond-mat/9810024.

[12]  S. Whittington,et al.  Monte carlo study of the interacting self-avoiding walk model in three dimensions , 1996 .

[13]  U. Hansmann Parallel tempering algorithm for conformational studies of biological molecules , 1997, physics/9710041.

[14]  N. Alves,et al.  Partition function zeros and finite size scaling of helix-coil transitions in a polypeptide. , 2000, Physical review letters.

[15]  Bernd A. Berg,et al.  Multicanonical procedure for continuum peptide models , 2000, J. Comput. Chem..

[16]  Harold A. Scheraga,et al.  MONTE CARLO SIMULATION OF A FIRST-ORDER TRANSITION FOR PROTEIN FOLDING , 1994 .

[17]  G. Parisi,et al.  Simulated tempering: a new Monte Carlo scheme , 1992, hep-lat/9205018.

[18]  Janke,et al.  Multibondic cluster algorithm for Monte Carlo simulations of first-order phase transitions. , 1995, Physical review letters.

[19]  A. Lyubartsev,et al.  New approach to Monte Carlo calculation of the free energy: Method of expanded ensembles , 1992 .

[20]  Connie Page,et al.  Computing Science and Statistics , 1992 .

[21]  D. Landau,et al.  Efficient, multiple-range random walk algorithm to calculate the density of states. , 2000, Physical review letters.

[22]  Paulo Murilo Castro de Oliveira Broad histogram relation is exact , 1998 .

[23]  G. Torrie,et al.  Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling , 1977 .

[24]  Sanford Weisberg,et al.  Computing science and statistics : proceedings of the 30th Symposium on the Interface, Minneapolis, Minnesota, May 13-16, 1998 : dimension reduction, computational complexity and information , 1998 .

[25]  Hansmann,et al.  Simulation of an ensemble with varying magnetic field: A numerical determination of the order-order interface tension in the D=2 Ising model. , 1993, Physical review. B, Condensed matter.

[26]  Berg,et al.  New approach to spin-glass simulations. , 1992, Physical review letters.

[27]  Yuko Okamoto,et al.  Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple‐minima problem , 1993, J. Comput. Chem..

[28]  Robert H. Swendsen,et al.  TRANSITION MATRIX MONTE CARLO REWEIGHTING AND DYNAMICS , 1999 .

[29]  Lik Wee Lee,et al.  Monte Carlo algorithms based on the number of potential moves , 1999 .

[30]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.