A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life

[1]  Scott E. Gabriel,et al.  Zinc-Independent Folate Biosynthesis: Genetic, Biochemical, and Structural Investigations Reveal New Metal Dependence for GTP Cyclohydrolase IB , 2009, Journal of bacteriology.

[2]  Zhemin Zhou,et al.  Self-subunit Swapping Chaperone Needed for the Maturation of Multimeric Metalloenzyme Nitrile Hydratase by a Subunit Exchange Mechanism Also Carries Out the Oxidation of the Metal Ligand Cysteine Residues and Insertion of Cobalt* , 2009, Journal of Biological Chemistry.

[3]  Arto S. Baghdayan,et al.  Genetic Variation and Evolution of the Pathogenicity Island of Enterococcus faecalis , 2009, Journal of bacteriology.

[4]  A. Munro,et al.  Demonstration That CobG, the Monooxygenase Associated with the Ring Contraction Process of the Aerobic Cobalamin (Vitamin B12) Biosynthetic Pathway, Contains an Fe-S Center and a Mononuclear Non-heme Iron Center* , 2009, Journal of Biological Chemistry.

[5]  K. Sowers,et al.  The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo. , 2009, Biochemistry.

[6]  G. Gottschalk,et al.  RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea* , 2009, Journal of Biological Chemistry.

[7]  Geoffrey J. Barton,et al.  Jalview Version 2—a multiple sequence alignment editor and analysis workbench , 2009, Bioinform..

[8]  M. Schmitt,et al.  Regulation and Activity of a Zinc Uptake Regulator, Zur, in Corynebacterium diphtheriae , 2008, Journal of bacteriology.

[9]  K. Waldron,et al.  How do bacterial cells ensure that metalloproteins get the correct metal? , 2009, Nature Reviews Microbiology.

[10]  A. Labigne,et al.  In Vivo Interactome of Helicobacter pylori Urease Revealed by Tandem Affinity Purification*S , 2008, Molecular & Cellular Proteomics.

[11]  H. Hecht,et al.  trans-Dienelactone hydrolase from Pseudomonas reinekei MT1, a novel zinc-dependent hydrolase. , 2008, Biochemical and biophysical research communications.

[12]  Kathleen F. Kerr,et al.  Comparative transcriptome analysis of Agrobacterium tumefaciens in response to plant signal salicylic acid, indole‐3‐acetic acid and γ‐amino butyric acid reveals signalling cross‐talk and Agrobacterium–plant co‐evolution , 2008, Cellular microbiology.

[13]  K. Shiraki,et al.  Discovery of posttranslational maturation by self-subunit swapping , 2008, Proceedings of the National Academy of Sciences.

[14]  Ji-Liang Tang,et al.  The Zur of Xanthomonas campestris functions as a repressor and an activator of putative zinc homeostasis genes via recognizing two distinct sequences within its target promoters , 2008, Nucleic acids research.

[15]  G. Rotilio,et al.  Attenuated Salmonella enterica serovar Typhimurium lacking the ZnuABC transporter confers immune-based protection against challenge infections in mice. , 2008, Vaccine.

[16]  Scott E. Gabriel,et al.  Regulation of the Bacillus subtilis yciC Gene and Insights into the DNA-Binding Specificity of the Zinc-Sensing Metalloregulator Zur , 2008, Journal of bacteriology.

[17]  Vincent Schächter,et al.  A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1 , 2008, Molecular systems biology.

[18]  R. Banerjee,et al.  Adenosyltransferase tailors and delivers coenzyme B12. , 2008, Nature chemical biology.

[19]  Antonio Rosato,et al.  Occurrence of copper proteins through the three domains of life: a bioinformatic approach. , 2008, Journal of proteome research.

[20]  Volker Müller,et al.  Identification of genes involved in salt adaptation in the archaeon Methanosarcina mazei Gö1 using genome-wide gene expression profiling. , 2007, FEMS microbiology letters.

[21]  V. Kapur,et al.  Profiling Bovine Antibody Responses to Mycobacterium avium subsp. paratuberculosis Infection by Using Protein Arrays , 2007, Infection and Immunity.

[22]  R. Banerjee,et al.  Crystal Structure and Mutagenesis of the Metallochaperone MeaB , 2007, Journal of Biological Chemistry.

[23]  Sara L. Zimmer,et al.  The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions , 2007, Science.

[24]  F. C. Soncini,et al.  Biochemical and structural characterization of Salmonella typhimurium glyoxalase II: new insights into metal ion selectivity. , 2007, Biochemistry.

[25]  S. Merchant,et al.  FEA1, FEA2, and FRE1, Encoding Two Homologous Secreted Proteins and a Candidate Ferrireductase, Are Expressed Coordinately with FOX1 and FTR1 in Iron-Deficient Chlamydomonas reinhardtii , 2007, Eukaryotic Cell.

[26]  Atsushi Arakaki,et al.  Cytoplasmic ATPase involved in ferrous ion uptake from magnetotactic bacterium Magnetospirillum magneticum AMB‐1 , 2007, FEBS letters.

[27]  Dmitry A Rodionov,et al.  Comparative genomic reconstruction of transcriptional regulatory networks in bacteria. , 2007, Chemical reviews.

[28]  F. Raushel,et al.  N-Acetyl-D-glucosamine-6-phosphate deacetylase: substrate activation via a single divalent metal ion. , 2007, Biochemistry.

[29]  J. Moroney,et al.  Proposed Carbon Dioxide Concentrating Mechanism in Chlamydomonas reinhardtii , 2007, Eukaryotic Cell.

[30]  M. R. Leach,et al.  The Role of Complex Formation between the Escherichia coli Hydrogenase Accessory Factors HypB and SlyD* , 2007, Journal of Biological Chemistry.

[31]  A. Rosato,et al.  Non‐heme iron through the three domains of life , 2007, Proteins.

[32]  Brian L. Bell,et al.  Identification of an Orphan Response Regulator Required for the Virulence of Francisella spp. and Transcription of Pathogenicity Island Genes , 2007, Infection and Immunity.

[33]  M. R. Leach,et al.  Metallocenter assembly of the hydrogenase enzymes. , 2007, Current opinion in chemical biology.

[34]  Simon Prochnik,et al.  Novel metabolism in Chlamydomonas through the lens of genomics. , 2007, Current opinion in plant biology.

[35]  Francesco Musiani,et al.  Biochemical studies on Mycobacterium tuberculosis UreG and comparative modeling reveal structural and functional conservation among the bacterial UreG family. , 2007, Biochemistry.

[36]  I. Smith,et al.  Global Analysis of the Mycobacterium tuberculosis Zur (FurB) Regulon , 2006, Journal of bacteriology.

[37]  Fengquan Liu,et al.  Zinc Uptake Regulator (zur) Gene Involved in Zinc Homeostasis and Virulence of Xanthomonas oryzae pv. oryzae in Rice , 2007, Current Microbiology.

[38]  S. Merchant,et al.  Manganese Deficiency in Chlamydomonas Results in Loss of Photosystem II and MnSOD Function, Sensitivity to Peroxides, and Secondary Phosphorus and Iron Deficiency1[W][OA] , 2006, Plant Physiology.

[39]  Antonio Rosato,et al.  Zinc through the three domains of life. , 2006, Journal of proteome research.

[40]  Marie-Christine Brun,et al.  TreeDyn: towards dynamic graphics and annotations for analyses of trees , 2006, BMC Bioinformatics.

[41]  R. Banerjee,et al.  Assembly and protection of the radical enzyme, methylmalonyl-CoA mutase, by its chaperone. , 2006, Biochemistry.

[42]  Alison G. Smith,et al.  Algae Need Their Vitamins , 2006, Eukaryotic Cell.

[43]  A. Sjöstedt,et al.  In vivo proteomic analysis of the intracellular bacterial pathogen, Francisella tularensis, isolated from mouse spleen. , 2006, Biochemical and biophysical research communications.

[44]  D. Eide Zinc transporters and the cellular trafficking of zinc. , 2006, Biochimica et biophysica acta.

[45]  S. Merchant,et al.  Between a rock and a hard place: trace element nutrition in Chlamydomonas. , 2006, Biochimica et biophysica acta.

[46]  R. Banerjee,et al.  Energetics of Interaction between the G-protein Chaperone, MeaB, and B12-dependent Methylmalonyl-CoA Mutase* , 2006, Journal of Biological Chemistry.

[47]  Brunero Liseo,et al.  Profiling of Mycobacterium tuberculosis gene expression during human macrophage infection: upregulation of the alternative sigma factor G, a group of transcriptional regulators, and proteins with unknown function. , 2006, Research in microbiology.

[48]  C. Médigue,et al.  MaGe: a microbial genome annotation system supported by synteny results , 2006, Nucleic acids research.

[49]  A. Kandlbinder,et al.  pTAC2, -6, and -12 Are Components of the Transcriptionally Active Plastid Chromosome That Are Required for Plastid Gene Expression , 2005, The Plant Cell Online.

[50]  R. Hausinger,et al.  Biosynthesis of Active Bacillus subtilis Urease in the Absence of Known Urease Accessory Proteins , 2005, Journal of bacteriology.

[51]  Naryttza N. Diaz,et al.  The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes , 2005, Nucleic acids research.

[52]  Tao Cai,et al.  Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary , 2005, Bioinform..

[53]  X. Li,et al.  The zinc uptake regulator Zur is essential for the full virulence of Xanthomonas campestris pv. campestris. , 2005, Molecular plant-microbe interactions : MPMI.

[54]  D. Dean,et al.  Structure, function, and formation of biological iron-sulfur clusters. , 2005, Annual review of biochemistry.

[55]  T. Ganz,et al.  Interleukin-6 regulates the zinc transporter Zip14 in liver and contributes to the hypozincemia of the acute-phase response. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[56]  A. Emili,et al.  A Role for SlyD in the Escherichia coli Hydrogenase Biosynthetic Pathway* , 2005, Journal of Biological Chemistry.

[57]  Qingbo Li,et al.  Proteome of Methanosarcina acetivorans Part I: an expanded view of the biology of the cell. , 2005, Journal of proteome research.

[58]  A. Vitiello,et al.  Simultaneous analysis of host and pathogen interactions during an in vivo infection reveals local induction of host acute phase response proteins, a novel bacterial stress response, and evidence of a host‐imposed metal ion limited environment , 2004, Cellular microbiology.

[59]  M. Watarai,et al.  Zinc uptake system (znuA locus) of Brucella abortus is essential for intracellular survival and virulence in mice. , 2004, The Journal of veterinary medical science.

[60]  G. O'donovan,et al.  Pseudomonas aeruginosa dihydroorotases: a tale of three pyrCs , 2004, Archives of Microbiology.

[61]  G. Crooks,et al.  WebLogo: a sequence logo generator. , 2004, Genome research.

[62]  M. Lidstrom,et al.  MeaB Is a Component of the Methylmalonyl-CoA Mutase Complex Required for Protection of the Enzyme from Inactivation* , 2004, Journal of Biological Chemistry.

[63]  Simon Kasif,et al.  Segmentally Variable Genes:A New Perspective on Adaptation , 2004, PLoS biology.

[64]  V. Kapur,et al.  A 38-Kilobase Pathogenicity Island Specific for Mycobacterium avium subsp. paratuberculosis Encodes Cell Surface Proteins Expressed in the Host , 2004, Infection and Immunity.

[65]  Caleb B. Bell,et al.  A Role for Iron in an Ancient Carbonic Anhydrase* , 2004, Journal of Biological Chemistry.

[66]  R. Hausinger,et al.  Biosynthesis of metal sites. , 2004, Chemical reviews.

[67]  Gary L Gilliland,et al.  Crystal structure of the Escherichia coli YjiA protein suggests a GTP‐dependent regulatory function , 2004, Proteins.

[68]  R. Maier,et al.  Roles of conserved nucleotide-binding domains in accessory proteins, HypB and UreG, in the maturation of nickel-enzymes required for efficient Helicobacter pylori colonization. , 2003, Microbial pathogenesis.

[69]  M. Maeda,et al.  Motif CXCC in nitrile hydratase activator is critical for NHase biogenesis in vivo , 2003, FEBS letters.

[70]  M. Gelfand,et al.  Comparative Genomics of the Vitamin B12 Metabolism and Regulation in Prokaryotes* , 2003, Journal of Biological Chemistry.

[71]  R. Maier,et al.  Dependence of Helicobacter pylori Urease Activity on the Nickel-Sequestering Ability of the UreE Accessory Protein , 2003, Journal of bacteriology.

[72]  Andrey A Mironov,et al.  Comparative genomics of bacterial zinc regulons: Enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[73]  Thomas V. O'Halloran,et al.  Transition Metal Speciation in the Cell: Insights from the Chemistry of Metal Ion Receptors , 2003, Science.

[74]  D. Mansuy,et al.  Chaperone-assisted expression, purification, and characterization of recombinant nitrile hydratase NI1 from Comamonas testosteroni. , 2003, Protein expression and purification.

[75]  E. Jaffe An unusual phylogenetic variation in the metal ion binding sites of porphobilinogen synthase. , 2003, Chemistry & biology.

[76]  Michael K. Gilson,et al.  ASAP, a systematic annotation package for community analysis of genomes , 2003, Nucleic Acids Res..

[77]  Julie D Thompson,et al.  Multiple Sequence Alignment Using ClustalW and ClustalX , 2003, Current protocols in bioinformatics.

[78]  Tao Wang,et al.  Functional Analysis of the Bacillus subtilis Zur Regulon , 2002, Journal of bacteriology.

[79]  J. Liautard,et al.  The analysis of the intramacrophagic virulome of Brucella suis deciphers the environment encountered by the pathogen inside the macrophage host cell , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[80]  A. Banerjee,et al.  RETRACTED ARTICLE: The nitrile-degrading enzymes: current status and future prospects , 2002, Applied Microbiology and Biotechnology.

[81]  P. Tan,et al.  Characterization of Burkholderia pseudomallei infection and identification of novel virulence factors using a Caenorhabditis elegans host system , 2002, Molecular microbiology.

[82]  Detlef D. Leipe,et al.  Classification and evolution of P-loop GTPases and related ATPases. , 2002, Journal of molecular biology.

[83]  P. Mascharak Structural and functional models of nitrile hydratase , 2002 .

[84]  Kei-Hoi Cheung,et al.  The TRIPLES database: a community resource for yeast molecular biology , 2002, Nucleic Acids Res..

[85]  R. Huber,et al.  Crystal Structure of Klebsiella aerogenesUreE, a Nickel-binding Metallochaperone for Urease Activation* , 2001, The Journal of Biological Chemistry.

[86]  J. V. Van Beeumen,et al.  Structural Basis for Ni2+Transport and Assembly of the Urease Active Site by the Metallochaperone UreE from Bacillus pasteurii * , 2001, The Journal of Biological Chemistry.

[87]  A. Valencia,et al.  Intrinsic errors in genome annotation. , 2001, Trends in genetics : TIG.

[88]  S. Hohmann,et al.  Transposon mutagenesis reveals novel loci affecting tolerance to salt stress and growth at low temperature , 2001, Current Genetics.

[89]  H M Holden,et al.  Molecular structure of dihydroorotase: a paradigm for catalysis through the use of a binuclear metal center. , 2001, Biochemistry.

[90]  M. Yohda,et al.  Fe-type nitrile hydratase. , 2001, Journal of Inorganic Biochemistry.

[91]  R. Maier,et al.  Requirement of nickel metabolism proteins HypA and HypB for full activity of both hydrogenase and urease in Helicobacter pylori , 2001, Molecular microbiology.

[92]  R. Hausinger,et al.  UreE stimulation of GTP-dependent urease activation in the UreD-UreF-UreG-urease apoprotein complex. , 2000, Biochemistry.

[93]  I. Longden,et al.  EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.

[94]  R. Maier,et al.  Dual Roles of Bradyrhizobium japonicumNickelin Protein in Nickel Storage and GTP-Dependent Ni Mobilization , 2000, Journal of bacteriology.

[95]  M. Yohda,et al.  Cobalt‐substituted Fe‐type nitrile hydratase of Rhodococcus sp. N‐771 , 2000, FEBS letters.

[96]  R C Wade,et al.  Blue copper proteins: A comparative analysis of their molecular interaction properties , 2000, Protein science : a publication of the Protein Society.

[97]  D. Kurtz Oxygen-carrying proteins: three solutions to a common problem. , 1999, Essays in biochemistry.

[98]  R. Hausinger,et al.  GTP-dependent activation of urease apoprotein in complex with the UreD, UreF, and UreG accessory proteins. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[99]  E. Koonin,et al.  Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. , 1999, Nucleic acids research.

[100]  Temple F. Smith,et al.  The WD repeat: a common architecture for diverse functions. , 1999, Trends in biochemical sciences.

[101]  M. Yohda,et al.  Functional expression of nitrile hydratase in Escherichia coli: requirement of a nitrile hydratase activator and post-translational modification of a ligand cysteine. , 1999, Journal of biochemistry.

[102]  Patrice Gouet,et al.  ESPript: analysis of multiple sequence alignments in PostScript , 1999, Bioinform..

[103]  S. Brenner Errors in genome annotation. , 1999, Trends in genetics : TIG.

[104]  R. Overbeek,et al.  The use of gene clusters to infer functional coupling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[105]  Identification of a zinc-specific metalloregulatory protein, Zur, controlling zinc transport operons in Bacillus subtilis. , 1998, Journal of bacteriology.

[106]  S. Merchant,et al.  Copper-responsive gene expression during adaptation to copper deficiency. , 1998, Methods in enzymology.

[107]  Michael Y. Galperin,et al.  Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement, and operon disruption , 1998, Silico Biol..

[108]  Shin Lin,et al.  Metal ion chaperone function of the soluble Cu(I) receptor Atx1. , 1997, Science.

[109]  R. Thauer,et al.  Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol:cob(I)alamin methyltransferase reaction. , 1997, European journal of biochemistry.

[110]  R. Thauer,et al.  Methanol: Coenzyme M Methyltransferase from Methanosarcina Barkeri , 1997 .

[111]  R. Thauer,et al.  Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1. , 1997, European journal of biochemistry.

[112]  F. Morel,et al.  In vivo substitution of zinc by cobalt in carbonic anhydrase of a marine diatom , 1996 .

[113]  S. Merchant,et al.  Two copper-responsive elements associated with the Chlamydomonas Cyc6 gene function as targets for transcriptional activators. , 1995, The Plant cell.

[114]  A. L. Campbell,et al.  Aspartate transcarbamoylase genes of Pseudomonas putida: requirement for an inactive dihydroorotase for assembly into the dodecameric holoenzyme , 1995, Journal of bacteriology.

[115]  R. Maier,et al.  HypB protein of Bradyrhizobium japonicum is a metal-binding GTPase capable of binding 18 divalent nickel ions per dimer. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[116]  M. Nishiyama,et al.  Nitrile hydratase gene from Rhodococcus sp. N-774 requirement for its downstream region for efficient expression. , 1994, Bioscience, biotechnology, and biochemistry.

[117]  L. Debussche,et al.  Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cobinamide kinase-cobinamide phosphate guanylylt , 1991, Journal of bacteriology.

[118]  S. Merchant,et al.  Rapid degradation of apoplastocyanin in Cu(II)-deficient cells of Chlamydomonas reinhardtii. , 1986, The Journal of biological chemistry.

[119]  S. Merchant,et al.  Regulation by copper of the expression of plastocyanin and cytochrome c552 in Chlamydomonas reinhardi , 1986, Molecular and cellular biology.

[120]  E. Weinberg Metal Starvation of Pathogens by Hosts , 1975 .

[121]  I. Kochan The role of iron in bacterial infections, with special consideration of host-tubercle bacillus interaction. , 1973, Current topics in microbiology and immunology.