Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?
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[1] J. Raes,et al. Quantitative assessment of protein function prediction from metagenomics shotgun sequences , 2007, Proceedings of the National Academy of Sciences.
[2] Peter J. A. Cock,et al. Evolution of Gene Overlaps: Relative Reading Frame Bias in Prokaryotic Two-Component System Genes , 2007, Journal of Molecular Evolution.
[3] Christian von Mering,et al. STRING 7—recent developments in the integration and prediction of protein interactions , 2006, Nucleic Acids Res..
[4] Mladen A. Vouk,et al. Predicting Shine–Dalgarno Sequence Locations Exposes Genome Annotation Errors , 2006, PLoS Comput. Biol..
[5] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[6] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[7] J. Shendure,et al. Materials and Methods Som Text Figs. S1 and S2 Tables S1 to S4 References Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome , 2022 .
[8] M. Sakharkar,et al. Comparative study of overlapping genes in bacteria, with special reference to Rickettsia prowazekii and Rickettsia conorii. , 2005, International journal of systematic and evolutionary microbiology.
[9] S. Tringe,et al. Comparative Metagenomics of Microbial Communities , 2004, Science.
[10] S. Chisholm,et al. Properties of overlapping genes are conserved across microbial genomes. , 2004, Genome research.
[11] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[12] Masaru Tomita,et al. On dynamics of overlapping genes in bacterial genomes. , 2003, Gene.
[13] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[14] J. L. Cherry. Genome size and operon content. , 2003, Journal of theoretical biology.
[15] Anne-Lise Veuthey,et al. Automated annotation of microbial proteomes in SWISS-PROT , 2003, Comput. Biol. Chem..
[16] S. Karlin,et al. Correlations between Shine-Dalgarno Sequences and Gene Features Such as Predicted Expression Levels and Operon Structures , 2002, Journal of bacteriology.
[17] A. N. Spiridonov,et al. Congruent evolution of different classes of non-coding DNA in prokaryotic genomes. , 2002, Nucleic acids research.
[18] Julio Collado-Vides,et al. A powerful non-homology method for the prediction of operons in prokaryotes , 2002, ISMB.
[19] Eugene V Koonin,et al. Purifying and directional selection in overlapping prokaryotic genes. , 2002, Trends in genetics : TIG.
[20] E. Koonin,et al. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. , 2001, Genome research.
[21] S. Salzberg,et al. Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.
[22] M. Tomita,et al. Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniae. , 1999, Nucleic acids research.
[23] B. Snel,et al. Conservation of gene order: a fingerprint of proteins that physically interact. , 1998, Trends in biochemical sciences.
[24] A. Eyre-Walker,et al. The distance between Escherichia coli genes is related to gene expression levels , 1995, Journal of bacteriology.
[25] R. Aebersold,et al. Identification, isolation, and overexpression of the gene encoding the psi subunit of DNA polymerase III holoenzyme , 1993, Journal of bacteriology.
[26] G. Stormo,et al. Translation initiation in Escherichia coli: sequences within the ribosome‐binding site , 1992, Molecular microbiology.
[27] F. Sanger,et al. Nucleotide sequence of bacteriophage φX174 DNA , 1977, Nature.
[28] C. A. Hutchison,et al. Overlapping genes in bacteriophage φX174 , 1976, Nature.
[29] Michael Y. Galperin,et al. Using the COG Database to Improve Gene Recognition in Complete Genomes , 2004, Genetica.
[30] Mark D'Souza,et al. Use of contiguity on the chromosome to predict functional coupling , 1998, Silico Biol..
[31] T. Grundström,et al. Overlapping genes. , 1983, Annual review of genetics.
[32] F. Sanger,et al. Nucleotide sequence of bacteriophage phi X174 DNA. , 1977, Nature.
[33] B. Barrell,et al. Overlapping genes in bacteriophage phiX174. , 1976, Nature.