Modularity in animal development and evolution: elements of a conceptual framework for EvoDevo.

For at least a century biologists have been talking, mostly in a black-box sense, about developmental mechanisms. Only recently have biologists succeeded broadly in fishing out the contents of these black boxes. Unfortunately the view from inside the black box is almost as obscure as that from without, and developmental biologists increasingly confront the need to synthesize known facts about developmental phenomena into mechanistic descriptions of complex systems. To evolutionary biologists, the emerging understanding of developmental mechanisms is an opportunity to understand the origins of variation not just in the selective milieu but also in the variability of the developmental process, the substrate for morphological change. Ultimately, evolutionary developmental biology (EvoDevo) expects to articulate how the diversity of organic form results from adaptive variation in development. This ambition demands a shift in the way biologists describe causality, and the central problem of EvoDevo is to understand how the architecture of development confers evolvability. We argue in this essay that it makes little sense to think of this question in terms of individual gene function or isolated morphometrics, but rather in terms of higher-order modules such as gene networks and homologous characters. We outline the conceptual challenges raised by this shift in perspective, then present a selection of case studies we believe to be paradigmatic for how biologists think about modularity in development and evolution. J. Exp. Zool. (Mol. Dev. Evol.) 285:307-325, 1999.

[1]  J. W. Saunders The proximo-distal sequence of origin of the parts of the chick wing and the role of the ectoderm. , 1948, The Journal of experimental zoology.

[2]  J. W. Saunders,et al.  The role of the apical ridge of ectoderm in the differentiation of the morphological structure and inductive specificity of limb parts in the chick , 1957 .

[3]  J. Monod,et al.  Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.

[4]  D. Summerbell,et al.  Positional signalling and specification of digits in chick limb morphogenesis , 1975, Nature.

[5]  J. Kukalová-Peck Origin and evolution of insect wings and their relation to metamorphosis, as documented by the fossil record , 1978, Journal of morphology.

[6]  D. Fisher The Eighth Day of Creation: Makers of the Revolution in Biology , 1979 .

[7]  S. Gould,et al.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[8]  D. Summerbell The zone of polarizing activity: evidence for a role in normal chick limb morphogenesis. , 1979, Journal of embryology and experimental morphology.

[9]  J. Cooke,et al.  Scale of body pattern adjusts to available cell number in amphibian embryos , 1981, Nature.

[10]  S. Gould,et al.  Exaptation—a Missing Term in the Science of Form , 1982, Paleobiology.

[11]  P. Alberch,et al.  A DEVELOPMENTAL ANALYSIS OF AN EVOLUTIONARY TREND: DIGITAL REDUCTION IN AMPHIBIANS , 1985, Evolution; international journal of organic evolution.

[12]  D. Savva The epigenetic nature of early chordate development : by P.D. Nieuwkoop, A.G. Johnen and B. Albers Cambridge University Press; Cambridge, 1985 ix + 373 pages. £40.00, $69.50 , 1987 .

[13]  C. Nüsslein-Volhard,et al.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner , 1988, Cell.

[14]  Michael Akam,et al.  Homeotic genes and the control of segment diversity , 1988 .

[15]  C. Nüsslein-Volhard,et al.  A gradient of bicoid protein in Drosophila embryos , 1988, Cell.

[16]  G. Struhl,et al.  Cis- acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos , 1988, Nature.

[17]  Günter P. Wagner,et al.  THE ORIGIN OF MORPHOLOGICAL CHARACTERS AND THE BIOLOGICAL BASIS OF HOMOLOGY , 1989, Evolution; international journal of organic evolution.

[18]  G. Wagner The Biological Homology Concept , 1989 .

[19]  Wolfgang Driever,et al.  The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo , 1989, Nature.

[20]  K. Struhl,et al.  The gradient morphogen bicoid is a concentration-dependent transcriptional activator , 1989, Cell.

[21]  P. Ingham,et al.  Cell patterning in the Drosophila segment: spatial regulation of the segment polarity gene patched. , 1990, Development.

[22]  Diethard Tautz,et al.  A morphogenetic gradient of hunchback protein organizes the expression of the gap genes Krüppel and knirps in the early Drosophila embryo , 1990, Nature.

[23]  A. Martinez-Arias,et al.  Isolation of an abdominal-A gene from the locust Schistocerca gregaria and its expression during early embryogenesis. , 1990, Development.

[24]  L. Riddiford,et al.  Isolation and embryonic expression of an abdominal-A-like gene from the lepidopteran, Manduca sexta. , 1991, Development.

[25]  Stuart A. Kauffman,et al.  The origins of order , 1993 .

[26]  E C Stephenson,et al.  Microtubules mediate the localization of bicoid RNA during Drosophila oogenesis. , 1991, Development.

[27]  V. Roth,et al.  Homology and hierarchies: Problems solved and unresolved , 1991 .

[28]  J. Maienschein The origins of Entwicklungsmechanik. , 1991, Developmental biology.

[29]  Scott F. Gilbert,et al.  A Conceptual History of Modern Embryology , 2012, Developmental Biology.

[30]  T. Tabata,et al.  The Drosophila hedgehog gene is expressed specifically in posterior compartment cells and is a target of engrailed regulation. , 1992, Genes & development.

[31]  Jean-Paul Vincent,et al.  The state of engrailed expression is not clonally transmitted during early Drosophila development , 1992, Cell.

[32]  Nipam H. Patel,et al.  Changing role of even-skipped during the evolution of insect pattern formation , 1992, Nature.

[33]  Peter A. Lawrence,et al.  Control of Drosophila body pattern by the hunchback morphogen gradient , 1992, Cell.

[34]  C. Tickle,et al.  FGF-4 replaces the apical ectodermal ridge and directs outgrowth and patterning of the limb , 1993, Cell.

[35]  Günter P. Wagner,et al.  How can a character be developmentally constrained despite variation in developmental pathways? , 1993 .

[36]  B. Lieberman,et al.  Evolutionary Developmental Biology , 1993 .

[37]  C. Tabin,et al.  Sonic hedgehog mediates the polarizing activity of the ZPA , 1993, Cell.

[38]  B. Herrmann,et al.  Homologs of the mouse Brachyury gene are involved in the specification of posterior terminal structures in Drosophila, Tribolium, and Locusta. , 1994, Genes & development.

[39]  Sean Carroll,et al.  Evolution of homeotic gene regulation and function in flies and butterflies , 1994, Nature.

[40]  R. Kelsh,et al.  Homeotic gene expression in the locust Schistocerca: an antibody that detects conserved epitopes in Ultrabithorax and abdominal-A proteins. , 1994, Developmental genetics.

[41]  M. C. Mckitrick On Homology and the Ontological Relationship of Parts , 1994 .

[42]  W. Jaeckle Multiple Modes of Asexual Reproduction by Tropical and Subtropical Sea Star Larvae: an Unusual Adaptation for Genet Dispersal and Survival. , 1994, The Biological bulletin.

[43]  C. Tickle,et al.  A positive feedback loop coordinates growth and patterning in the vertebrate limb , 1994, Nature.

[44]  N. Patel,et al.  Developmental evolution: insights from studies of insect segmentation. , 1994, Science.

[45]  S. Carroll,et al.  Conservation of wingless patterning functions in the short-germ embryos of Tribolium castaneum , 1994, Nature.

[46]  Insects take a homeotic test , 1994, Nature.

[47]  S. Carroll,et al.  The role of the Distal-less gene in the development and evolution of insect limbs , 1994, Current Biology.

[48]  C. Tabin,et al.  Sonic hedgehog and Fgf-4 act through a signaling cascade and feedback loop to integrate growth and patterning of the developing limb bud , 1994, Cell.

[49]  S. Carroll,et al.  The Development of Crustacean Limbs and the Evolution of Arthropods , 1995, Science.

[50]  M. Akam,et al.  Hox genes and the diversification of insect and crustacean body plans , 1995, Nature.

[51]  Craig Nelson,et al.  Hox genes and the evolution of vertebrate axial morphology. , 1995, Development.

[52]  Sean B. Carroll,et al.  Homeotic genes and the regulation and evolution of insect wing number , 1995, Nature.

[53]  S. Carroll Homeotic genes and the evolution of arthropods and chordates , 1995, Nature.

[54]  G. Wagner The biological role of homologues: A building block hypothesis , 1995 .

[55]  C. Tabin,et al.  Analysis of Hox gene expression in the chick limb bud. , 1996, Development.

[56]  L. Altenberg,et al.  PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY , 1996, Evolution; international journal of organic evolution.

[57]  R. Sommer,et al.  Evolution of nematode vulval fate patterning. , 1996, Developmental biology.

[58]  P. Sternberg,et al.  Symmetry breakage in the development of one-armed gonads in nematodes. , 1996, Development.

[59]  M. Scott,et al.  Conservation of the hedgehog/patched signaling pathway from flies to mice: induction of a mouse patched gene by Hedgehog. , 1996, Genes & development.

[60]  Y. Sasai,et al.  A common plan for dorsoventral patterning in Bilateria , 1996, Nature.

[61]  S. Carroll,et al.  Polyembryonic development: insect pattern formation in a cellularized environment. , 1996, Development.

[62]  C. Tabin,et al.  Biochemical evidence that Patched is the Hedgehog receptor , 1996, Nature.

[63]  R. Raff Understanding Evolution: The Next Step. (Book Reviews: The Shape of Life. Genes, Development, and the Evolution of Animal Form.) , 1996 .

[64]  Gerd B. Müller,et al.  Homology, Hox Genes, and Developmental Integration , 1996 .

[65]  P. Lemaire,et al.  The vertebrate organizer: structure and molecules. , 1996, Trends in genetics : TIG.

[66]  R. Raff,et al.  Resynthesizing evolutionary and developmental biology. , 1996, Developmental biology.

[67]  R. Nusse,et al.  Wnt signaling: a common theme in animal development. , 1997, Genes & development.

[68]  T. Kaufman,et al.  Evolution of the insect body plan as revealed by the Sex combs reduced expression pattern. , 1997, Development.

[69]  M. Akam,et al.  Cellularization in locust embryos occurs before blastoderm formation. , 1997, Development.

[70]  J. Gerhart,et al.  Formation and function of Spemann's organizer. , 1997, Annual review of cell and developmental biology.

[71]  S. Carroll,et al.  The origin and evolution of animal appendages. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[72]  E. Davidson,et al.  The hardwiring of development: organization and function of genomic regulatory systems. , 1997, Development.

[73]  D. Kalderon,et al.  Hedgehog signalling: Ci complex cuts and clasps , 1997, Current Biology.

[74]  T. Kornberg,et al.  Proteolysis That Is Inhibited by Hedgehog Targets Cubitus interruptus Protein to the Nucleus and Converts It to a Repressor , 1997, Cell.

[75]  J. Hooper,et al.  Hedgehog signaling regulates transcription through Gli/Ci binding sites in the wingless enhancer , 1997, Mechanisms of Development.

[76]  P. Sternberg,et al.  Two nested gonadal inductions of the vulva in nematodes. , 1997, Development.

[77]  N. Patel,et al.  Crustacean appendage evolution associated with changes in Hox gene expression , 1997, Nature.

[78]  E J Balser,et al.  Cloning by Ophiuroid Echinoderm Larvae. , 1998, The Biological bulletin.

[79]  A. Garcı́a-Bellido The engrailed story. , 1998, Genetics.

[80]  G. Martin,et al.  The roles of FGFs in the early development of vertebrate limbs. , 1998, Genes & development.

[81]  J. W. Saunders The proximo-distal sequence of origin of the parts of the chick wing and the role of the ectoderm. 1948. , 1998, The Journal of experimental zoology.

[82]  G. Wagner,et al.  1,2,3 = 2,3,4: a solution to the problem of the homology of the digits in the avian hand. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[83]  Johan Bollen,et al.  The evolution of complexity , 1999 .

[84]  M. Félix Evolution of developmental mechanisms in nematodes. , 1999, The Journal of experimental zoology.

[85]  D. Arendt,et al.  Comparison of early nerve cord development in insects and vertebrates. , 1999, Development.

[86]  G. Wagner,et al.  Evolution of Hoxa-11 Expression in Amphibians: Is the Urodele Autopodium an Innovation? 1 , 1999 .

[87]  Gunther J. Eble,et al.  The evolution of complexity , 2001, Complex..