Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites.
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Kevin Struhl | George M Church | Joseph T Wade | G. Church | K. Struhl | N. Reppas | J. Wade | Nikos B Reppas
[1] J Seth Strattan,et al. Nucleosomes unfold completely at a transcriptionally active promoter. , 2003, Molecular cell.
[2] J. Courcelle,et al. Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. , 2001, Genetics.
[3] D. Botstein,et al. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF , 2001, Nature.
[4] Shane T. Jensen,et al. The Spo0A regulon of Bacillus subtilis , 2003, Molecular microbiology.
[5] R. Woodgate,et al. Identification of additional genes belonging to the LexA regulon in Escherichia coli , 2000, Molecular microbiology.
[6] J Seth Strattan,et al. Removal of promoter nucleosomes by disassembly rather than sliding in vivo. , 2004, Molecular cell.
[7] G. Church,et al. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation , 1998, Nature Biotechnology.
[8] D. Mount,et al. The SOS regulatory system of Escherichia coli , 1982, Cell.
[9] K. Struhl,et al. Genome-Wide Occupancy Profile of the RNA Polymerase III Machinery in Saccharomyces cerevisiae Reveals Loci with Incomplete Transcription Complexes , 2004, Molecular and Cellular Biology.
[10] C. Dorman,et al. Regulation of gene expression by histone-like proteins in bacteria. , 2003, Current opinion in genetics & development.
[11] D. Mount,et al. Identification of high affinity binding sites for LexA which define new DNA damage-inducible genes in Escherichia coli. , 1994, Journal of molecular biology.
[12] R. Losick,et al. Additional Targets of the Bacillus subtilis Global Regulator CodY Identified by Chromatin Immunoprecipitation and Genome-Wide Transcript Analysis , 2003, Journal of bacteriology.
[13] Mark Gerstein,et al. CREB Binds to Multiple Loci on Human Chromosome 22 , 2004 .
[14] Lucy Shapiro,et al. Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[15] S. Busby,et al. A simple mechanism for co‐dependence on two activators at an Escherichia coli promoter , 2001, The EMBO journal.
[16] F. Claverie-Martin,et al. Analysis of the regulatory region of the protease III (ptr) gene of Escherichia coli K-12. , 1987, Gene.
[17] S. Cawley,et al. Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs , 2004, Cell.
[18] Shane T. Jensen,et al. The Program of Gene Transcription for a Single Differentiating Cell Type during Sporulation in Bacillus subtilis , 2004, PLoS biology.
[19] Kevin Struhl,et al. Copyright © 2004, American Society for Microbiology. All Rights Reserved. Genomic Studies with Escherichia coli MelR Protein: Applications of , 2004 .
[20] Kevin Struhl,et al. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. , 2005, Molecular cell.
[21] F. Boccard,et al. Spatial arrangement and macrodomain organization of bacterial chromosomes , 2005, Molecular microbiology.
[22] J. Workman,et al. Alteration of nucleosome structure as a mechanism of transcriptional regulation. , 1998, Annual review of biochemistry.
[23] C. D. Hardy,et al. Topological domain structure of the Escherichia coli chromosome. , 2004, Genes & development.
[24] Kevin Struhl,et al. Preferential Accessibility of the Yeast his3 Promoter Is Determined by a General Property of the DNA Sequence, Not by Specific Elements , 2000, Molecular and Cellular Biology.
[25] Kevin Struhl,et al. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. , 2003, Molecular cell.
[26] K. Struhl,et al. Histone Acetylation at Promoters Is Differentially Affected by Specific Activators and Repressors , 2001, Molecular and Cellular Biology.
[27] P. Quillardet,et al. DNA array analysis of gene expression in response to UV irradiation in Escherichia coli. , 2003, Research in microbiology.
[28] K. Struhl. Fundamentally Different Logic of Gene Regulation in Eukaryotes and Prokaryotes , 1999, Cell.
[29] J. Rine,et al. Regulated expression of endonuclease EcoRI in Saccharomyces cerevisiae: nuclear entry and biological consequences. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[30] G. Church,et al. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array , 2000, Nature Biotechnology.
[31] G. Church,et al. A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. , 1998, Journal of molecular biology.
[32] E. Serra,et al. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association , 2001, Nature Genetics.
[33] H. Reinke,et al. Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. , 2003, Molecular cell.
[34] R. Mitchel,et al. Inducible DNA-repair systems in yeast: competition for lesions. , 1987, Mutation research.
[35] R. T. Dame,et al. The role of nucleoid‐associated proteins in the organization and compaction of bacterial chromatin , 2005, Molecular microbiology.
[36] S. Schreiber,et al. Global nucleosome occupancy in yeast , 2004, Genome Biology.
[37] J. Dixon,et al. Eukaryotic proteins expressed in Escherichia coli: an improved thrombin cleavage and purification procedure of fusion proteins with glutathione S-transferase. , 1991, Analytical biochemistry.
[38] J. Lieb,et al. Evidence for nucleosome depletion at active regulatory regions genome-wide , 2004, Nature Genetics.
[39] Thomas E. Royce,et al. Distribution of NF-κB-binding sites across human chromosome 22 , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[40] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[41] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.
[42] G. Felsenfeld,et al. Chromatin Unfolds , 1996, Cell.
[43] V. Iyer,et al. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. , 1995, The EMBO journal.
[44] G. Walker. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. , 1984, Microbiological reviews.
[45] Nicola J. Rinaldi,et al. Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.
[46] Kevin Struhl,et al. Chromatin Immunoprecipitation for Determining the Association of Proteins with Specific Genomic Sequences In Vivo , 2004, Current protocols in cell biology.
[47] Jian-Dong Huang,et al. Efficient and seamless DNA recombineering using a thymidylate synthase A selection system in Escherichia coli , 2005, Nucleic acids research.