MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning
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Siu-Ming Yiu | Francis Y. L. Chin | Henry C. M. Leung | Yi Wang | Henry LeC. M. ung | S. Yiu | Francis Y. L. Chin | Yi Wang
[1] Tao Jiang,et al. A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic Reads , 2012, WABI.
[2] T. Scheffer,et al. Taxonomic metagenome sequence assignment with structured output models , 2011, Nature Methods.
[3] Siu-Ming Yiu,et al. MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample , 2012, Bioinform..
[4] Zhaojun Bai,et al. CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads , 2007, RECOMB.
[5] S. Salzberg,et al. Phymm and PhymmBL: Metagenomic Phylogenetic Classification with Interpolated Markov Models , 2009, Nature Methods.
[6] Rita Casadio,et al. Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings , 2005, WABI.
[7] Brian C. Thomas,et al. Community-wide analysis of microbial genome sequence signatures , 2009, Genome Biology.
[8] Yan Boucher,et al. Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies , 2006, Applied and Environmental Microbiology.
[9] I. Rigoutsos,et al. Accurate phylogenetic classification of variable-length DNA fragments , 2007, Nature Methods.
[10] Siu-Ming Yiu,et al. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth , 2012, Bioinform..
[11] Yu-Wei Wu,et al. A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples , 2010, RECOMB.
[12] S. Tringe,et al. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen , 2011, Science.
[13] Natalia Ivanova,et al. Metagenomic analysis of phosphorus removing sludge communities , 2008 .
[14] Siu-Ming Yiu,et al. MetaCluster: unsupervised binning of environmental genomic fragments and taxonomic annotation , 2010, BCB '10.
[15] L. Koski,et al. The Closest BLAST Hit Is Often Not the Nearest Neighbor , 2001, Journal of Molecular Evolution.
[16] Yi Luo,et al. How independent are the appearances of n-mers in different genomes? , 2004, Bioinform..
[17] Rustam I. Aminov,et al. Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota , 2008, PloS one.
[18] Natalia Ivanova,et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities , 2006, Nature Biotechnology.
[19] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[20] Siu-Ming Yiu,et al. Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers , 2009, BMC Bioinformatics.
[21] Alice Carolyn McHardy,et al. Taxonomic binning of metagenome samples generated by next-generation sequencing technologies , 2012, Briefings Bioinform..
[22] Siu-Ming Yiu,et al. MetaCluster 4.0: A Novel Binning Algorithm for NGS Reads and Huge Number of Species , 2012, J. Comput. Biol..
[23] Henry C. M. Leung,et al. Title MetaCluster-TA : taxonomic annotation for metagenomic databased on assembly-assisted binning , 2014 .
[24] Siu-Ming Yiu,et al. A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio , 2011, Bioinform..
[25] S. Schuster,et al. Integrative analysis of environmental sequences using MEGAN4. , 2011, Genome research.