Integrated applications interrogating a structured network database for genomics research

[1]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[2]  Wagied Davids,et al.  A unique web-based application for scalable and rapid comparative genomics , 2005 .

[3]  A. Scorilas,et al.  Decreased concentration of human kallikrein 6 in brain extracts of Alzheimer's disease patients. , 2002, Clinical biochemistry.

[4]  Tatiana Tatusova,et al.  NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..

[5]  Tom H. Pringle,et al.  The human genome browser at UCSC. , 2002, Genome research.

[6]  Amos Bairoch,et al.  PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors , 2002, Briefings Bioinform..

[7]  E. Diamandis,et al.  Human tissue kallikreins: physiologic roles and applications in cancer. , 2004, Molecular cancer research : MCR.

[8]  Chris Sander,et al.  The HSSP database of protein structure-sequence alignments and family profiles , 1998, Nucleic Acids Res..

[9]  Maria Jesus Martin,et al.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 , 2003, Nucleic Acids Res..

[10]  A Bairoch,et al.  SWISS-PROT: connecting biomolecular knowledge via a protein database. , 2001, Current issues in molecular biology.

[11]  S. Henikoff,et al.  Blocks‐based methods for detecting protein homology , 2000, Electrophoresis.

[12]  S. Salzberg,et al.  Versatile and open software for comparing large genomes , 2004, Genome Biology.

[13]  Randall A. Bolanos,et al.  Whole-genome shotgun assembly and comparison of human genome assemblies , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[14]  Chintalapati Janaki,et al.  Accelerating comparative genomics using parallel computing , 2003, Silico Biol..

[15]  S W Scherer,et al.  Molecular characterization of zyme/protease M/neurosin (PRSS9), a hormonally regulated kallikrein-like serine protease. , 1999, Genomics.

[16]  C. Sander,et al.  Database of homology‐derived protein structures and the structural meaning of sequence alignment , 1991, Proteins.