Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
暂无分享,去创建一个
[1] Jie Liang,et al. Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. , 2004, Journal of molecular biology.
[2] Ruth Nussinov,et al. A method for simultaneous alignment of multiple protein structures , 2004, Proteins.
[3] H. Wolfson,et al. Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking. , 2004, Structure.
[4] H. Wolfson,et al. A new, structurally nonredundant, diverse data set of protein–protein interfaces and its implications , 2004, Protein science : a publication of the Protein Society.
[5] L. Mirny,et al. Protein complexes and functional modules in molecular networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[6] Sandor Vajda,et al. CAPRI: A Critical Assessment of PRedicted Interactions , 2003, Proteins.
[7] B. Rost,et al. Predicted protein–protein interaction sites from local sequence information , 2003, FEBS letters.
[8] Hui Lu,et al. Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. , 2003, Genome research.
[9] D. Eisenberg,et al. Computational methods of analysis of protein-protein interactions. , 2003, Current opinion in structural biology.
[10] R. Nussinov,et al. Protein–protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[11] Hui Lu,et al. Development of unified statistical potentials describing protein-protein interactions. , 2003, Biophysical journal.
[12] B. Rost,et al. Analysing six types of protein-protein interfaces. , 2003, Journal of molecular biology.
[13] Ariel Fernández,et al. Insufficiently dehydrated hydrogen bonds as determinants of protein interactions , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[14] D. Baker,et al. A simple physical model for binding energy hot spots in protein–protein complexes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[15] L. Serrano,et al. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. , 2002, Journal of molecular biology.
[16] J. Janin,et al. Dissecting protein–protein recognition sites , 2002, Proteins.
[17] A. Valencia,et al. Prediction of protein--protein interaction sites in heterocomplexes with neural networks. , 2002, European journal of biochemistry.
[18] W. Delano. Unraveling hot spots in binding interfaces: progress and challenges. , 2002, Current opinion in structural biology.
[19] O. Lichtarge,et al. Evolutionary predictions of binding surfaces and interactions. , 2002, Current opinion in structural biology.
[20] H. Wolfson,et al. Multiple diverse ligands binding at a single protein site : A matter of pre-existing populations , 2001 .
[21] B Honig,et al. Electrostatic contributions to protein–protein interactions: Fast energetic filters for docking and their physical basis , 2001, Protein science : a publication of the Protein Society.
[22] K A Dill,et al. Are proteins well-packed? , 2001, Biophysical journal.
[23] Kurt S. Thorn,et al. ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions , 2001, Bioinform..
[24] L. Mirny,et al. Evolutionary conservation of the folding nucleus. , 2000, Journal of molecular biology.
[25] A. Thomas,et al. A fast method to predict protein interaction sites from sequences. , 2000, Journal of molecular biology.
[26] A. Pommer,et al. Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes. , 2000, Journal of molecular biology.
[27] D. Eisenberg,et al. Protein function in the post-genomic era , 2000, Nature.
[28] R. Nussinov,et al. Conservation of polar residues as hot spots at protein interfaces , 2000, Proteins.
[29] R. Norel,et al. Electrostatic aspects of protein-protein interactions. , 2000, Current opinion in structural biology.
[30] W. Delano,et al. Convergent solutions to binding at a protein-protein interface. , 2000, Science.
[31] Colin Kleanthous,et al. Protein-protein recognition , 2000 .
[32] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[33] R M Jackson,et al. Comparison of protein–protein interactions in serine protease‐inhibitor and antibody‐antigen complexes: Implications for the protein docking problem , 2008, Protein science : a publication of the Protein Society.
[34] D. Eisenberg,et al. Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.
[35] B K Shoichet,et al. Structure-based discovery and in-parallel optimization of novel competitive inhibitors of thymidylate synthase. , 1999, Chemistry & biology.
[36] C. Chothia,et al. The atomic structure of protein-protein recognition sites. , 1999, Journal of molecular biology.
[37] O. Ptitsyn,et al. Empirical solvent‐mediated potentials hold for both intra‐molecular and inter‐molecular inter‐residue interactions , 1998, Protein science : a publication of the Protein Society.
[38] I Bahar,et al. Packing of sidechains in low-resolution models for proteins. , 1998, Folding & design.
[39] R Nussinov,et al. Protein folding via binding and vice versa. , 1998, Folding & design.
[40] A. Bogan,et al. Anatomy of hot spots in protein interfaces. , 1998, Journal of molecular biology.
[41] B. Matthews,et al. The response of T4 lysozyme to large‐to‐small substitutions within the core and its relation to the hydrophobic effect , 1998, Protein science : a publication of the Protein Society.
[42] R C Wade,et al. Prediction of protein hydration sites from sequence by modular neural networks. , 1998, Protein engineering.
[43] Joël Janin,et al. Specific versus non-specific contacts in protein crystals , 1997, Nature Structural Biology.
[44] S. Jones,et al. Analysis of protein-protein interaction sites using surface patches. , 1997, Journal of molecular biology.
[45] H. Wolfson,et al. A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. , 1996, Journal of molecular biology.
[46] R. Jernigan,et al. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. , 1996, Journal of molecular biology.
[47] S. Jones,et al. Principles of protein-protein interactions. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[48] D. Ringe. What makes a binding site a binding site? , 1995, Current opinion in structural biology.
[49] T. Clackson,et al. A hot spot of binding energy in a hormone-receptor interface , 1995, Science.
[50] B K Shoichet,et al. A relationship between protein stability and protein function. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[51] J. Janin,et al. Principles of protein-protein recognition from structure to thermodynamics. , 1995, Biochimie.
[52] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[53] K A Dill,et al. Side‐chain entropy and packing in proteins , 1994, Protein science : a publication of the Protein Society.
[54] K. Dill,et al. Modeling compact denatured states of proteins. , 1994, Biochemistry.
[55] J. Thornton,et al. Satisfying hydrogen bonding potential in proteins. , 1994, Journal of molecular biology.
[56] D. Covell,et al. A role for surface hydrophobicity in protein‐protein recognition , 1994, Protein science : a publication of the Protein Society.
[57] S. Rackovsky,et al. Prediction of protein conformation on the basis of a search for compact structures: Test on avian pancreatic polypeptide , 1993, Protein science : a publication of the Protein Society.
[58] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[59] C. Chothia. One thousand families for the molecular biologist , 1992, Nature.
[60] C. Chothia. Proteins. One thousand families for the molecular biologist. , 1992, Nature.
[61] H. Wolfson,et al. Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[62] B. Cunningham,et al. Rational design of receptor-specific variants of human growth hormone. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[63] R. M. Burnett,et al. Distribution and complementarity of hydropathy in mutisunit proteins , 1991, Proteins.
[64] C. Chothia,et al. The structure of protein-protein recognition sites. , 1990, The Journal of biological chemistry.
[65] P. Argos. An investigation of protein subunit and domain interfaces. , 1988, Protein engineering.
[66] Cyrus Chothia,et al. The accessible surface area and stability of oligomeric proteins , 1987, Nature.
[67] C. Chothia,et al. Principles of protein–protein recognition , 1975, Nature.
[68] B. Lee,et al. The interpretation of protein structures: estimation of static accessibility. , 1971, Journal of molecular biology.