From deterministic to fuzzy decision-making in artificial cells
暂无分享,去创建一个
Vincent Noireaux | Roy Bar-Ziv | Ferdinand Greiss | Shirley S Daube | R. Bar-Ziv | V. Noireaux | S. Daube | Ferdinand Greiss
[1] A. Riggs,et al. The lac repressor-operator interaction. 3. Kinetic studies. , 1970, Journal of molecular biology.
[2] A. Riggs,et al. The lac represser-operator interaction , 1970 .
[3] A V Reed,et al. Speed-Accuracy Trade-Off in Recognition Memory , 1973, Science.
[4] J. Hopfield. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[5] Mark Ptashne,et al. Interactions between DNA-bound repressors govern regulation by the λ phage repressor , 1979 .
[6] Robert T. Sauer,et al. Lambda repressor mutations that increase the affinity and specificity of operator binding , 1985, Cell.
[7] M. Ptashne. A Genetic Switch , 1986 .
[8] P. V. von Hippel,et al. Facilitated Target Location in Biological Systems* , 2022 .
[9] A. Arkin,et al. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. , 1998, Genetics.
[10] William Bialek,et al. Stability and Noise in Biochemical Switches , 2000, NIPS.
[11] C. Gualerzi,et al. Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control , 2002, Molecular microbiology.
[12] Farren J. Isaacs,et al. Prediction and measurement of an autoregulatory genetic module , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[13] K. Novak,et al. Tumour viruses: A genetic switch , 2004, Nature Reviews Cancer.
[14] P. R. ten Wolde,et al. Enhancement of the stability of genetic switches by overlapping upstream regulatory domains. , 2003, Physical review letters.
[15] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[16] X. Xie,et al. Probing Gene Expression in Live Cells, One Protein Molecule at a Time , 2006, Science.
[17] E. Winfree,et al. Construction of an in vitro bistable circuit from synthetic transcriptional switches , 2006, Molecular systems biology.
[18] L. Mirny,et al. How gene order is influenced by the biophysics of transcription regulation , 2007, Proceedings of the National Academy of Sciences.
[19] Ian B. Dodd,et al. Cro’s role in the CI–Cro bistable switch is critical for λ’s transition from lysogeny to lytic development , 2007 .
[20] David Zbaida,et al. A single-step photolithographic interface for cell-free gene expression and active biochips. , 2007, Small.
[21] Drew Endy,et al. Determination of cell fate selection during phage lambda infection , 2008, Proceedings of the National Academy of Sciences.
[22] Shirley S Daube,et al. Synthetic gene brushes: a structure–function relationship , 2008, Molecular systems biology.
[23] A. Raj,et al. Single-molecule approaches to stochastic gene expression. , 2009, Annual review of biophysics.
[24] Andrej Kosmrlj,et al. How a protein searches for its site on DNA: the mechanism of facilitated diffusion , 2009 .
[25] S. Carpenter,et al. Early-warning signals for critical transitions , 2009, Nature.
[26] G. Vinnicombe,et al. Fundamental limits on the suppression of molecular fluctuations , 2010, Nature.
[27] Jean Sippy,et al. Decision Making at a Subcellular Level Determines the Outcome of Bacteriophage Infection , 2010, Cell.
[28] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells , 2010, Science.
[29] M. Elowitz,et al. Build life to understand it , 2010, Nature.
[30] O. Sliusarenko,et al. Spatial organization of the flow of genetic information in bacteria , 2010, Nature.
[31] Vincent Noireaux,et al. Coarse-grained dynamics of protein synthesis in a cell-free system. , 2011, Physical review letters.
[32] A. Oudenaarden,et al. Cellular Decision Making and Biological Noise: From Microbes to Mammals , 2011, Cell.
[33] Ido Golding,et al. Decision making in living cells: lessons from a simple system. , 2011, Annual review of biophysics.
[34] Yuhai Tu,et al. The energy-speed-accuracy tradeoff in sensory adaptation , 2012, Nature Physics.
[35] Haidong Feng,et al. Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis , 2012, Nature Structural &Molecular Biology.
[36] Tsvi Tlusty,et al. The Ribosome as an Optimal Decoder: A Lesson in Molecular Recognition , 2013, Cell.
[37] Arnab Mukherjee,et al. Characterization of Flavin-Based Fluorescent Proteins: An Emerging Class of Fluorescent Reporters , 2013, PloS one.
[38] A. Piruska,et al. Enhanced transcription rates in membrane-free protocells formed by coacervation of cell lysate , 2013, Proceedings of the National Academy of Sciences.
[39] Taekjip Ha,et al. An Improved Surface Passivation Method for Single-Molecule Studies , 2014, Nature Methods.
[40] Vincent Noireaux,et al. Programmable on-chip DNA compartments as artificial cells , 2014, Science.
[41] Vincent Noireaux,et al. Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system. , 2014, ACS synthetic biology.
[42] Vincent Noireaux,et al. Propagating gene expression fronts in a one-dimensional coupled system of artificial cells , 2015, Nature Physics.
[43] Johan Paulsson,et al. Stochastic Switching of Cell Fate in Microbes. , 2015, Annual review of microbiology.
[44] Ido Golding,et al. Measurement of gene regulation in individual cells reveals rapid switching between promoter states , 2016, Science.
[45] Vincent Noireaux,et al. The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology. , 2016, ACS synthetic biology.
[46] Lenny H. H. Meijer,et al. Macromolecular crowding develops heterogeneous environments of gene expression in picoliter droplets , 2015, Nature nanotechnology.
[47] Vincent Noireaux,et al. Synchrony and pattern formation of coupled genetic oscillators on a chip of artificial cells , 2017, Proceedings of the National Academy of Sciences.
[48] Yinan Zheng,et al. Blood pressure and expression of microRNAs in whole blood , 2017, PloS one.
[49] Jean-Loup Faulon,et al. How Will Kinetics and Thermodynamics Inform Our Future Efforts to Understand and Build Biological Systems? , 2017, Cell systems.
[50] Kai Sundmacher,et al. Toward Artificial Mitochondrion: Mimicking Oxidative Phosphorylation in Polymer and Hybrid Membranes. , 2017, Nano letters.
[51] Maximilian T. Strauss,et al. Super-resolution microscopy with DNA-PAINT , 2017, Nature Protocols.
[52] Katharina Gaus,et al. NicoLase—An open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy , 2017, PloS one.
[53] P. Cluzel,et al. Systematic characterization of maturation time of fluorescent proteins in living cells , 2017, Nature Methods.
[54] Wei Han,et al. Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch , 2018, Nature Communications.
[55] Stephan Herminghaus,et al. MaxSynBio: Avenues Towards Creating Cells from the Bottom Up. , 2018, Angewandte Chemie.
[56] Thomas M. Norman,et al. Stochastic antagonism between two proteins governs a bacterial cell fate switch , 2019, Science.
[57] Vincent Noireaux,et al. Quantitative modeling of transcription and translation of an all-E. coli cell-free system , 2019, Scientific Reports.
[58] Ruud Stoof,et al. A model for the spatio-temporal design of gene regulatory circuits , 2019, bioRxiv.
[59] Peter Claus,et al. Light-powered CO2 fixation in a chloroplast mimic with natural and synthetic parts , 2020, Science.
[60] A. D. Rick. The Zac Repressor-Operator Interaction III . ? Kinetic Studies , 2022 .