KINETIC CAPILLARY ELECTROPHORESIS AND ITS APPLICATIONS

[1]  R. Kennedy,et al.  Capillary electrophoresis and fluorescence anisotropy for quantitative analysis of peptide-protein interactions using JAK2 and SH2-Bbeta as a model system. , 2005, Analytical chemistry.

[2]  Yingfu Li,et al.  Tau protein binds single‐stranded DNA sequence specifically – the proof obtained in vitro with non‐equilibrium capillary electrophoresis of equilibrium mixtures , 2005, FEBS letters.

[3]  Ning Fang,et al.  General approach to high-efficiency simulation of affinity capillary electrophoresis. , 2005, Analytical chemistry.

[4]  M. Berezovski,et al.  Thermochemistry of protein-DNA interaction studied with temperature-controlled nonequilibrium capillary electrophoresis of equilibrium mixtures. , 2005, Analytical chemistry.

[5]  M. Berezovski,et al.  Chemical cytometry for monitoring metabolism of a Ras‐mimicking substrate in single cells , 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[6]  M. Berezovski,et al.  Using nonequilibrium capillary electrophoresis of equilibrium mixtures for the determination of temperature in capillary electrophoresis. , 2004, Analytical chemistry.

[7]  C. Poulter,et al.  Monitoring the three enzymatic activities involved in posttranslational modifications of Ras proteins , 2004 .

[8]  Victor Okhonin,et al.  Sweeping capillary electrophoresis: a non-stopped-flow method for measuring bimolecular rate constant of complex formation between protein and DNA. , 2004, Journal of the American Chemical Society.

[9]  Mengsu Yang,et al.  Surface plasmon resonance study of the molecular recognition between polymerase and DNA containing various mismatches and conformational changes of DNA-protein complexes. , 2004, Biosensors & bioelectronics.

[10]  S. Manalis,et al.  Micromechanical detection of proteins using aptamer-based receptor molecules. , 2004, Analytical chemistry.

[11]  Y. Zou,et al.  Thermodynamic characterization of the interaction of mutant UvrB protein with damaged DNA. , 2004, Biochemistry.

[12]  Ruedi Aebersold,et al.  Parallel, quantitative measurement of protein binding to a 120-element double-stranded DNA array in real time using surface plasmon resonance microscopy. , 2004, Analytical chemistry.

[13]  S. Krylov,et al.  Nonequilibrium capillary electrophoresis of equilibrium mixtures, mathematical model. , 2004, Analytical chemistry.

[14]  A. Pingoud,et al.  DNA Recognition by the Homing Endonuclease PI-SceI Involves a Divalent Metal Ion Cofactor-induced Conformational Change* , 2004, Journal of Biological Chemistry.

[15]  M. Bowser,et al.  In vitro evolution of functional DNA using capillary electrophoresis. , 2004, Journal of the American Chemical Society.

[16]  Chun Yang,et al.  Modeling of Electroosmotic Flow and Capillary Electrophoresis with the Joule Heating Effect: The Nernst−Planck Equation versus the Boltzmann Distribution , 2003 .

[17]  F. Cava,et al.  Enhancement of DNA, cDNA synthesis and fidelity at high temperatures by a dimeric single-stranded DNA-binding protein. , 2003, Nucleic acids research.

[18]  M. Berezovski,et al.  Using DNA-binding proteins as an analytical tool. , 2003, Journal of the American Chemical Society.

[19]  Heiko Zettl,et al.  Comparative thermodynamic analysis of DNA--protein interactions using surface plasmon resonance and fluorescence correlation spectroscopy. , 2003, Biochemistry.

[20]  I. Poola.  Molecular assay to generate expression profile of eight estrogen receptor alpha isoform mRNA copy numbers in picogram amounts of total RNA from breast cancer tissues. , 2003, Analytical biochemistry.

[21]  Yingfu Li,et al.  Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures. , 2003, Analytical chemistry.

[22]  O. Voronina,et al.  Influence of DNA Aptamer Structure on the Specificity of Binding to Taq DNA Polymerase , 2003, Biochemistry (Moscow).

[23]  J. Balbach,et al.  Single‐stranded DNA binding of the cold‐shock protein CspB from Bacillus subtilis: NMR mapping and mutational characterization , 2003, Protein science : a publication of the Protein Society.

[24]  A. Rich,et al.  Z-DNA-binding proteins can act as potent effectors of gene expression in vivo , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[25]  Sergey N Krylov,et al.  Nonequilibrium capillary electrophoresis of equilibrium mixtures--a single experiment reveals equilibrium and kinetic parameters of protein-DNA interactions. , 2002, Journal of the American Chemical Society.

[26]  M. Berezovski,et al.  Measuring the activity of farnesyltransferase by capillary electrophoresis with laser‐induced fluorescence detection , 2002, Electrophoresis.

[27]  A. Kozlov,et al.  Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules. , 2002, Biochemistry.

[28]  W. Bujalowski,et al.  Kinetics of the E. coli replication factor DnaC protein-nucleotide interactions. II. Fluorescence anisotropy and transient, dynamic quenching stopped-flow studies of the reaction intermediates. , 2002, Biochemistry.

[29]  F. Leng,et al.  Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[30]  A. Kozlov,et al.  Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer. , 2002, Biochemistry.

[31]  H. Mao,et al.  A microfluidic device with a linear temperature gradient for parallel and combinatorial measurements. , 2002, Journal of the American Chemical Society.

[32]  W. David Wilson,et al.  Analyzing Biomolecular Interactions , 2002, Science.

[33]  X. Le,et al.  Fluorescence polarization detection for affinity capillary electrophoresis , 2002, Electrophoresis.

[34]  A. Orden,et al.  Two-beam fluorescence cross-correlation spectroscopy in an electrophoretic mobility shift assay. , 2002 .

[35]  S. Terabe,et al.  Estimation of binding constants by capillary electrophoresis. , 2002, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[36]  D. Bornhop,et al.  Quantification and evaluation of Joule heating in on‐chip capillary electrophoresis , 2002, Electrophoresis.

[37]  Yukio Sugiura,et al.  Artificial DNA-bending six-zinc finger peptides with different charged linkers: distinct kinetic properties of DNA bindings. , 2002, Biochemistry.

[38]  R. Kennedy,et al.  Retention and separation of adenosine and analogues by affinity chromatography with an aptamer stationary phase. , 2001, Analytical chemistry.

[39]  M. Famulok,et al.  Intramers as promising new tools in functional proteomics. , 2001, Chemistry & biology.

[40]  L. McGown,et al.  Open‐tubular capillary electrochromatography of bovine β‐lactoglobulin variants A and B using an aptamer stationary phase , 2001, Electrophoresis.

[41]  M. Gaitan,et al.  Temperature measurement in microfluidic systems using a temperature-dependent fluorescent dye. , 2001, Analytical chemistry.

[42]  G. Mosig,et al.  Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[43]  D. Armstrong,et al.  Methods for the determination of binding constants by capillary electrophoresis , 2001, Electrophoresis.

[44]  J. Sowell,et al.  Capillary electrophoresis-based immunoassay for insulin antibodies with near-infrared laser induced fluorescence detection. , 2001, Journal of chromatography. B, Biomedical sciences and applications.

[45]  J Frank,et al.  Recent advances in affinity capillary electrophoresis , 2000, Electrophoresis.

[46]  X. Le,et al.  Studies of protein--DNA interactions by capillary electrophoresis/laser-induced fluorescence polarization. , 2000, Analytical chemistry.

[47]  A. Webb,et al.  Monitoring temperature changes in capillary electrophoresis with nanoliter-volume NMR thermometry. , 2000, Analytical chemistry.

[48]  J. Haginaka.  Enantiomer separation of drugs by capillary electrophoresis using proteins as chiral selectors. , 2000, Journal of chromatography. A.

[49]  L. McGown,et al.  Separation of nontarget compounds by DNA aptamers. , 2000, Analytical chemistry.

[50]  D. Patel,et al.  Adaptive recognition by nucleic acid aptamers. , 2000, Science.

[51]  N. Heegaard,et al.  Identification, quantitation, and characterization of biomolecules by capillary electrophoretic analysis of binding interactions , 1999, Electrophoresis.

[52]  R. Jenison,et al.  A high throughput platform for systematic evolution of ligands by exponential enrichment (SELEX). , 1999, Combinatorial chemistry & high throughput screening.

[53]  S. Jayasena.  Aptamers: an emerging class of molecules that rival antibodies in diagnostics. , 1999, Clinical chemistry.

[54]  D. Hoagland,et al.  Capillary Electrophoresis Measurements of the Free Solution Mobility for Several Model Polyelectrolyte Systems , 1999 .

[55]  T. A. Hatton,et al.  Fluorescence-Based Thermometry:Principles and Applications , 1999 .

[56]  K. Goodson,et al.  Transient liquid crystal thermometry of microfabricated PCR vessel arrays , 1998 .

[57]  M E Eldefrawi,et al.  In vitro selection of RNA molecules that displace cocaine from the membrane-bound nicotinic acetylcholine receptor. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[58]  H. Meisel,et al.  Estimation of calcium-binding constants of casein phosphopeptides by capillary zone electrophoresis , 1998 .

[59]  R. Kennedy,et al.  Aptamers as ligands in affinity probe capillary electrophoresis. , 1998, Analytical chemistry.

[60]  F. Etzkorn,et al.  A capillary electrophoresis mobility shift assay for protein-DNA binding affinities free in solution. , 1998, Nucleic acids research.

[61]  A. Ellington,et al.  Adapting selected nucleic acid ligands (aptamers) to biosensors. , 1998, Analytical chemistry.

[62]  L. Gold,et al.  The mathematics of SELEX against complex targets. , 1998, Journal of molecular biology.

[63]  N. Heegaard,et al.  A heparin‐binding peptide from human serum amyloid P component characterized by affinity capillary electrophoresis , 1998, Electrophoresis.

[64]  G. Kneale,et al.  Equilibrium and kinetic binding analysis of the N-terminal domain of the Pf1 gene 5 protein and its interaction with single-stranded DNA. , 1998, Journal of molecular biology.

[65]  Volker A. Erdmann,et al.  High-affinity RNA as a recognition element in a biosensor , 1998 .

[66]  N. Stellwagen,et al.  The free solution mobility of DNA. , 1997, Biopolymers.

[67]  M. Yanagida,et al.  DNA renaturation activity of the SMC complex implicated in chromosome condensation , 1997, Nature.

[68]  H. Poppe,et al.  Principles and limitations of methods available for the determination of binding constants with affinity capillary electrophoresis , 1997 .

[69]  H. Boelens,et al.  Comparison of five methods for the study of drug-protein binding in affinity capillary electrophoresis. , 1997, Journal of chromatography. A.

[70]  P. Casey,et al.  Crystal Structure of Protein Farnesyltransferase at 2.25 Angstrom Resolution , 1997, Science.

[71]  P. Privalov,et al.  Energetics of folding and DNA binding of the MAT alpha 2 homeodomain. , 1997, Biochemistry.

[72]  S. Knapp,et al.  Thermal unfolding of the DNA-binding protein Sso7d from the hyperthermophile Sulfolobus solfataricus. , 1996, Journal of molecular biology.

[73]  Yongseong Kim,et al.  Electrostatic and Hydrodynamic Separation of DNA Fragments in Capillary Tubes , 1996 .

[74]  L. Gold,et al.  Bent pseudoknots and novel RNA inhibitors of type 1 human immunodeficiency virus (HIV-1) reverse transcriptase. , 1996, Journal of molecular biology.

[75]  S. Jayasena,et al.  Oligonucleotide inhibitors of Taq DNA polymerase facilitate detection of low copy number targets by PCR. , 1996, Journal of molecular biology.

[76]  H. Boelens,et al.  Critical evaluation of the applicability of capillary zone electrophoresis for the study of hapten-antibody complex formation. , 1996, Journal of chromatography. A.

[77]  M. A. Stebbins,et al.  Design and optimization of a capillary electrophoretic mobility shift assay involving trp repressor-DNA complexes. , 1996, Journal of chromatography. B, Biomedical applications.

[78]  J. Kinet,et al.  High-affinity oligonucleotide ligands to human IgE inhibit binding to Fc epsilon receptor I. , 1996, Journal of immunology.

[79]  A. Varki,et al.  Calcium-dependent oligonucleotide antagonists specific for L-selectin. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[80]  L. Freedman,et al.  Modulation of nuclear receptor interactions by ligands: kinetic analysis using surface plasmon resonance. , 1996, Biochemistry.

[81]  W. Lindner,et al.  Drug-protein binding sites. New trends in analytical and experimental methodology. , 1996, Journal of chromatography. B, Biomedical applications.

[82]  S D Jayasena,et al.  Use of a high affinity DNA ligand in flow cytometry. , 1996, Nucleic acids research.

[83]  D. Armstrong,et al.  Examination of the origin, variation, and proper use of expressions for the estimation of association constants by capillary electrophoresis , 1996 .

[84]  Godovikova Ts,et al.  Photoaffinity modification of amino acid derivatives of oligonucleotides in a complementary complex , 1995 .

[85]  G. Whitesides,et al.  Affinity Capillary Electrophoresis , 1995 .

[86]  T. Nakagawa,et al.  Capillary electrophoresis/frontal analysis for microanalysis of enantioselective protein binding of a basic drug. , 1995, Analytical chemistry.

[87]  A. Ellington,et al.  Dissecting protein:protein interactions between transcription factors with an RNA aptamer. , 1995, RNA.

[88]  G. Kneale,et al.  Comparison of Pf1 and Fd gene 5 proteins and their single-stranded DNA complexes by NMR spectroscopy and differential scanning calorimetry. , 1995, Biochemistry.

[89]  L. Gold,et al.  Selection of high-affinity RNA ligands to reverse transcriptase: inhibition of cDNA synthesis and RNase H activity. , 1994, Biochemistry.

[90]  G. Whitesides,et al.  Determination of binding constants of ligands to proteins by affinity capillary electrophoresis: compensation for electroosmotic flow. , 1994, Analytical chemistry.

[91]  S. P. Fodor,et al.  Light-generated oligonucleotide arrays for rapid DNA sequence analysis. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[92]  N. Dovichi,et al.  Detection of 100 molecules of product formed in a fucosyltransferase reaction. , 1994, Glycobiology.

[93]  J. Feigon,et al.  Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). , 1994, Journal of molecular biology.

[94]  A. Uitterlinden,et al.  Parallel genome analysis by two-dimensional DNA typing , 1993, Nature.

[95]  S. Swaminathan,et al.  A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA. , 1993, Biochemistry.

[96]  G. Whitesides,et al.  Use of affinity capillary electrophoresis to determine kinetic and equilibrium constants for binding of arylsulfonamides to bovine carbonic anhydrase. , 1993, Journal of medicinal chemistry.

[97]  L. Gold,et al.  Selective enrichment of RNA species for tight binding to Escherichia coli rho factor , 1993, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[98]  L. Gold,et al.  In vitro evolution of intrinsically bent DNA. , 1992, Journal of molecular biology.

[99]  N. Heegaard,et al.  Use of capillary zone electrophoresis to evaluate the binding of anionic carbohydrates to synthetic peptides derived from human serum amyloid P component. , 1992, Analytical chemistry.

[100]  H. Poppe,et al.  Study of protein-drug binding using capillary zone electrophoresis. , 1992, Journal of chromatography.

[101]  E. Vermaas,et al.  Selection of single-stranded DNA molecules that bind and inhibit human thrombin , 1992, Nature.

[102]  C. Tuerk,et al.  SELEXION. Systematic evolution of ligands by exponential enrichment with integrated optimization by non-linear analysis. , 1991, Journal of molecular biology.

[103]  T. Lohman,et al.  Monomers of the Escherichia coli SSB-1 mutant protein bind single-stranded DNA. , 1991, Journal of molecular biology.

[104]  J. Szostak,et al.  In vitro selection of RNA molecules that bind specific ligands , 1990, Nature.

[105]  L. Gold,et al.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. , 1990, Science.

[106]  George F. Sensabaugh,et al.  DNA typing from single hairs , 1988, Nature.

[107]  G. Krauss,et al.  Escherichia coli single-strand deoxyribonucleic acid binding protein: stability, specificity, and kinetics of complexes with oligonucleotides and deoxyribonucleic acid. , 1981, Biochemistry.

[108]  M. Gefter,et al.  Physical studies of the interaction between the Escherichia coli DNA binding protein and nucleic acids. , 1975, Nucleic acids research.

[109]  Sergey N Krylov,et al.  Non-equilibrium capillary electrophoresis of equilibrium mixtures--appreciation of kinetics in capillary electrophoresis. , 2003, The Analyst.

[110]  J. Xian.  Capillary DNA-protein mobility shift assay. , 2001, Methods in molecular biology.

[111]  M. Lee,et al.  Use of affinity capillary electrophoresis for the study of protein and drug interactions. , 1998, The Analyst.

[112]  I. Majerfeld,et al.  Affinity selection-amplification from randomized ribooligonucleotide pools. , 1996, Methods in enzymology.

[113]  B. Karger,et al.  Affinity probe capillary electrophoresis: analysis of recombinant human growth hormone with a fluorescent labeled antibody fragment. , 1994, Analytical chemistry.

[114]  V. Zarytova,et al.  Photomodification of RNA and DNA fragments by oligonucleotide reagents bearing arylazide groups. , 1993, Biochimie.

[115]  D. Dhanak,et al.  A study of the binding of vancomycin to dipeptides using capillary electrophoresis , 1992 .

[116]  N. Dovichi,et al.  High-sensitivity fluorescence detector fluorescein isothiocyanate derivatives of amino acids separated by capillary zone electrophoresis. , 1989, Journal of chromatography.

[117]  T. Lohman,et al.  Equilibrium binding of Escherichia coli single-strand binding protein to single-stranded nucleic acids in the (SSB)65 binding mode. Cation and anion effects and polynucleotide specificity. , 1988, Biochemistry.