Lichen-Derived Diffractaic Acid Inhibited Dengue Virus Replication in a Cell-Based System

Dengue is a mosquito-borne flavivirus that causes 21,000 deaths annually. Depsides and depsidones of lichens have previously been reported to be antimicrobials. In this study, our objective was to identify lichen-derived depsides and depsidones as dengue virus inhibitors. The 18 depsides and depsidones of Usnea baileyi, Usnea aciculifera, Parmotrema dilatatum, and Parmotrema tsavoense were tested against dengue virus serotype 2. Two depsides and one depsidone inhibited dengue virus serotype 2 without any apparent cytotoxicity. Diffractaic acid, barbatic acid, and Parmosidone C were three active compounds further characterized for their efficacies (EC50), cytotoxicities (CC50), and selectivity index (SI; CC50/EC50). Their EC50 (SI) values were 2.43 ± 0.19 (20.59), 0.91 ± 0.15 (13.33), and 17.42 ± 3.21 (8.95) μM, respectively. Diffractaic acid showed the highest selectivity index, and similar efficacies were also found in dengue serotypes 1–4, Zika, and chikungunya viruses. Cell-based studies revealed that the target was mainly in the late stage with replication and the formation of infectious particles. This report highlights that a lichen-derived diffractaic acid could become a mosquito-borne antiviral lead as its selectivity indices ranged from 8.07 to 20.59 with a proposed target at viral replication.

[1]  J. Eloff,et al.  Lichens: An update on their ethnopharmacological uses and potential as sources of drug leads. , 2022, Journal of ethnopharmacology.

[2]  T. Rungrotmongkol,et al.  Halogenated Baicalein as a Promising Antiviral Agent toward SARS-CoV-2 Main Protease , 2022, J. Chem. Inf. Model..

[3]  E. Ooi Repurposing Ivermectin as an Anti-dengue Drug. , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[4]  J. Chu,et al.  Dibromopinocembrin and Dibromopinostrobin Are Potential Anti-Dengue Leads with Mild Animal Toxicity , 2020, Molecules.

[5]  M. Beniddir,et al.  Salazinic Acid-Derived Depsidones and Diphenylethers with α-Glucosidase Inhibitory Activity from the Lichen Parmotrema dilatatum , 2020, Planta Medica.

[6]  S. Nandi,et al.  Atranorin, an antimicrobial metabolite from lichen Parmotrema rampoddense exhibited in vitro anti-breast cancer activity through interaction with Akt activity , 2020, Journal of biomolecular structure & dynamics.

[7]  F. Brayner,et al.  Barbatic acid from Cladia aggregata (lichen): Cytotoxicity and in vitro schistosomicidal evaluation and ultrastructural analysis against adult worms of Schistosoma mansoni. , 2020, Toxicology in vitro : an international journal published in association with BIBRA.

[8]  Xavier Siwe-Noundou,et al.  Cordidepsine is A Potential New Anti-HIV Depsidone from Cordia millenii, Baker , 2019, Molecules.

[9]  A. Tiwari,et al.  Comprehensive Analysis of Secondary Metabolites in Usnea longissima (Lichenized Ascomycetes, Parmeliaceae) Using UPLC-ESI-QTOF-MS/MS and Pro-Apoptotic Activity of Barbatic Acid , 2019, Molecules.

[10]  T. Rungrotmongkol,et al.  Binding pattern and susceptibility of epigallocatechin gallate against envelope protein homodimer of Zika virus: A molecular dynamics study , 2019, Journal of Molecular Liquids.

[11]  T. Rungrotmongkol,et al.  Cardol triene inhibits dengue infectivity by targeting kl loops and preventing envelope fusion , 2018, Scientific Reports.

[12]  J. Strating,et al.  The life cycle of non-polio enteroviruses and how to target it , 2018, Nature Reviews Microbiology.

[13]  D. Odimegwu Low-dose Sekikaic Acid Modulates Host Immunity and Protects Cells from Respiratory Syncytial Virus Infection , 2018 .

[14]  W. Chavasiri,et al.  Chemical constituents of the lichen Usnea baileyi (Stirt.) Zahlbr , 2018 .

[15]  H. Turkez,et al.  The anti-cancer efficacies of diffractaic, lobaric, and usnic acid: In vitro inhibition of glioma , 2018, Journal of cancer research and therapeutics.

[16]  W. Chavasiri,et al.  Halogenated Chrysins Inhibit Dengue and Zika Virus Infectivity , 2017, Scientific Reports.

[17]  J. Pezacki,et al.  An affinity-based probe for methyltransferase enzymes based on sinefungin , 2017 .

[18]  Andrea Brancale,et al.  Discovery of novel dengue virus NS5 methyltransferase non-nucleoside inhibitors by fragment-based drug design. , 2017, European journal of medicinal chemistry.

[19]  P. Bhattarakosol,et al.  Simplified dengue virus microwell plaque assay using an automated quantification program. , 2016, Journal of virological methods.

[20]  G. Fröschl,et al.  Serotype influences on dengue severity: a cross-sectional study on 485 confirmed dengue cases in Vitória, Brazil , 2016, BMC Infectious Diseases.

[21]  W. Chavasiri,et al.  New meta-depsidones and diphenyl ethers from the lichen Parmotrema tsavoense (Krog & Swinscow) Krog & Swinscow, Parmeliaceae , 2015 .

[22]  J. Boustie,et al.  Depsides: Lichen Metabolites Active against Hepatitis C Virus , 2015, PloS one.

[23]  V. T. Nga,et al.  A New Depside from Usnea aciculifera Growing in Vietnam , 2014, Natural product communications.

[24]  M. Ozaslan,et al.  In vivo Antitumoral Effect of Diffractaic Acid from Lichen Metabolites on Swiss Albino Mice with Ehrlich Ascites Carcinoma: An Experimental Study , 2014 .

[25]  Pei-Yong Shi,et al.  Conformational Flexibility of the Dengue Virus RNA-Dependent RNA Polymerase Revealed by a Complex with an Inhibitor , 2013, Journal of Virology.

[26]  Dennis E. Hruby,et al.  Novel Benzoxazole Inhibitor of Dengue Virus Replication That Targets the NS3 Helicase , 2013, Antimicrobial Agents and Chemotherapy.

[27]  W. Gerwick,et al.  Antifungal Depsidone Metabolites from Cordyceps dipterigena, an Endophytic Fungus Antagonistic to the Phytopathogen Gibberella fujikuroi. , 2012, Tetrahedron letters.

[28]  B. Aksakal,et al.  Diffractaic acid, a novel proapoptotic agent, induces with olive oil both apoptosis and antioxidative systems in Ti-implanted rabbits. , 2012, European journal of pharmacology.

[29]  D. Gelain,et al.  Redox properties and cytoprotective actions of atranorin, a lichen secondary metabolite. , 2011, Toxicology in vitro : an international journal published in association with BIBRA.

[30]  Derek A. T. Cummings,et al.  Serotype-Specific Differences in the Risk of Dengue Hemorrhagic Fever: An Analysis of Data Collected in Bangkok, Thailand from 1994 to 2006 , 2010, PLoS neglected tropical diseases.

[31]  Arthur J. Olson,et al.  AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading , 2009, J. Comput. Chem..

[32]  M. Mišić,et al.  The Antimicrobial Activity of the Lichen Substances of the Lichens Cladonia Furcata, Ochrolechia Androgyna, Parmelia Caperata and Parmelia Conspresa , 2008 .

[33]  J. Elix,et al.  Stictic acid derivatives from the lichen Usnea articulata and their antioxidant activities. , 2007, Journal of natural products.

[34]  C. Kai,et al.  Canine distemper virus induces apoptosis through caspase-3 and -8 activation in vero cells. , 2006, Journal of veterinary medicine. B, Infectious diseases and veterinary public health.

[35]  Zheng Yin,et al.  Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus , 2006, Nature Structural &Molecular Biology.

[36]  Subhash G. Vasudevan,et al.  Structure of the Dengue Virus Helicase/Nucleoside Triphosphatase Catalytic Domain at a Resolution of 2.4 Å , 2005, Journal of Virology.

[37]  V. Stollar,et al.  Low pH-induced cell fusion in flavivirus-infected Aedes albopictus cell cultures. , 1990, The Journal of general virology.

[38]  Dengue Richtlijn The Dengue , 1903, Methods in Molecular Biology.

[39]  Stuart D. Crawford Lichens Used in Traditional Medicine , 2019, Lichen Secondary Metabolites.

[40]  Branislav Rankovi Lichen Secondary Metabolites: Bioactive Properties and Pharmaceutical Potential , 2019 .

[41]  Yongcheng Song,et al.  Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease. , 2019, Journal of the American Chemical Society.

[42]  M. Kosanić,et al.  Lichens as a Potential Source of Bioactive Secondary Metabolites , 2015 .

[43]  B. Ranković Lichen Secondary Metabolites , 2015, Springer International Publishing.

[44]  R. Padmanabhan,et al.  Construction of plasmid, bacterial expression, purification, and assay of dengue virus type 2 NS5 methyltransferase. , 2014, Methods in molecular biology.