Horizontal gene transfer in prokaryotes: quantification and classification.
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[1] E. Koonin,et al. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. , 2001, Genome research.
[2] E. Koonin,et al. Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics , 2001, Microbiology and Molecular Biology Reviews.
[3] J. Davie,et al. Signal transduction pathways and the modification of chromatin structure. , 2001, Progress in nucleic acid research and molecular biology.
[4] Michael Y. Galperin,et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..
[5] Eugene V Koonin,et al. Interkingdom gene fusions , 2000, Genome Biology.
[6] H Philippe,et al. The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. , 2000, Trends in genetics : TIG.
[7] Dong-Guk Shin,et al. Horizontal Transfer of Archaeal Genes into the Deinococcaceae: Detection by Molecular and Computer-Based Approaches , 2000, Journal of Molecular Evolution.
[8] S. V. Van Doren,et al. The FHA domain mediates phosphoprotein interactions. , 2000, Journal of cell science.
[9] J. Heitman,et al. Signal Transduction Cascades Regulating Fungal Development and Virulence , 2000, Microbiology and Molecular Biology Reviews.
[10] S. Garcia-Vallvé,et al. Horizontal gene transfer in bacterial and archaeal complete genomes. , 2000, Genome research.
[11] J. Exposito,et al. Molecular adaptation to an extreme environment: origin of the thermal stability of the pompeii worm collagen. , 2000, Journal of molecular biology.
[12] C. Ponting,et al. Regulation of chromatin structure by site-specific histone H3 methyltransferases , 2000, Nature.
[13] E. Koonin,et al. The Impact of Comparative Genomics on Our Understanding of Evolution , 2000, Cell.
[14] Michael Y. Galperin,et al. Who's your neighbor? New computational approaches for functional genomics , 2000, Nature Biotechnology.
[15] H. Ochman,et al. Lateral gene transfer and the nature of bacterial innovation , 2000, Nature.
[16] M. Hochstrasser,et al. The Yeast ULP2 (SMT4) Gene Encodes a Novel Protease Specific for the Ubiquitin-Like Smt3 Protein , 2000, Molecular and Cellular Biology.
[17] Gary J. Olsen,et al. Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process , 2000, Microbiology and Molecular Biology Reviews.
[18] L. Aravind,et al. Comparative Genome Analysis of the Pathogenic Spirochetes Borrelia burgdorferi and Treponema pallidum , 2000, Infection and Immunity.
[19] H Philippe,et al. Molecular phylogeny: pitfalls and progress. , 2000, International microbiology : the official journal of the Spanish Society for Microbiology.
[20] E. Koonin,et al. A novel superfamily of predicted cysteine proteases from eukaryotes, viruses and Chlamydia pneumoniae. , 2000, Trends in biochemical sciences.
[21] S Brunak,et al. Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. , 2000, Nucleic acids research.
[22] W. Doolittle,et al. Uprooting the tree of life. , 2000, Scientific American.
[23] T. Hunter,et al. Signaling—2000 and Beyond , 2000, Cell.
[24] D. Moreira,et al. Multiple independent horizontal transfers of informational genes from bacteria to plasmids and phages: implications for the origin of bacterial replication machinery , 2000, Molecular microbiology.
[25] G. Tannock. The intestinal microflora: potentially fertile ground for microbial physiologists. , 2000, Advances in microbial physiology.
[26] Peer Bork,et al. SMART: a web-based tool for the study of genetically mobile domains , 2000, Nucleic Acids Res..
[27] P. Hanawalt,et al. A phylogenomic study of DNA repair genes, proteins, and processes. , 1999, Mutation research.
[28] I Uchiyama,et al. Shaping the genome--restriction-modification systems as mobile genetic elements. , 1999, Current opinion in genetics & development.
[29] J. Lawrence,et al. Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes. , 1999, Current opinion in genetics & development.
[30] M. W. Gray,et al. Evolution of organellar genomes. , 1999, Current opinion in genetics & development.
[31] R. Doolittle,et al. An Attempt to Pinpoint the Phylogenetic Introduction of Glutaminyl-tRNA Synthetase Among Bacteria , 1999, Journal of Molecular Evolution.
[32] C. Cambillau,et al. Structure-activity of cutinase, a small lipolytic enzyme. , 1999, Biochimica et biophysica acta.
[33] S. Salzberg,et al. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. , 1999, Science.
[34] E. Koonin,et al. The fukutin protein family – predicted enzymes modifying cell-surface molecules , 1999, Current Biology.
[35] John M. Logsdon,et al. Evolutionary genomics: Thermotoga heats up lateral gene transfer , 1999, Current Biology.
[36] E V Koonin,et al. Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. , 1999, Genome research.
[37] G. Olsen,et al. Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry? , 1999, Trends in genetics : TIG.
[38] Michael Y. Galperin,et al. Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. , 1999, Genome research.
[39] Tatiana A. Tatusova,et al. Complete genomes in WWW Entrez: data representation and analysis , 1999, Bioinform..
[40] Doolittle Wf. Phylogenetic Classification and the Universal Tree , 1999 .
[41] C. Ponting,et al. Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. , 1999, Journal of molecular biology.
[42] S. Salzberg,et al. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima , 1999, Nature.
[43] E. Pennisi. Is It Time to Uproot the Tree of Life? , 1999, Science.
[44] S Karlin,et al. Detecting Alien Genes in Bacterial Genomes a , 1999, Annals of the New York Academy of Sciences.
[45] E V Koonin,et al. Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange. , 1999, Trends in genetics : TIG.
[46] J. Lake,et al. Horizontal gene transfer among genomes: the complexity hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[47] M. Hochstrasser,et al. A new protease required for cell-cycle progression in yeast , 1999, Nature.
[48] E. Koonin,et al. Conserved domains in DNA repair proteins and evolution of repair systems. , 1999, Nucleic acids research.
[49] H. Mori,et al. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. , 1999, Molecular biology and evolution.
[50] H. Winkler,et al. Non-mitochondrial ATP transport. , 1999, Trends in biochemical sciences.
[51] W. Martin. Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.
[52] B F Lang,et al. Mitochondrial genome evolution and the origin of eukaryotes. , 1999, Annual review of genetics.
[53] R. Doolittle,et al. Evolutionary anomalies among the aminoacyl-tRNA synthetases. , 1998, Current opinion in genetics & development.
[54] David M. Ward,et al. A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities , 1998, Microbiology and Molecular Biology Reviews.
[55] T. Sicheritz-Pontén,et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria , 1998, Nature.
[56] L Sundström,et al. The Potential of Integrons and Connected Programmed Rearrangements for Mediating Horizontal Gene Transfer , 1998, APMIS. Supplementum.
[57] E V Koonin,et al. Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. , 1998, Trends in genetics : TIG.
[58] D. Söll,et al. Glutamyl-tRNA(Gln) amidotransferase in Deinococcus radiodurans may be confined to asparagine biosynthesis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[59] R. W. Davis,et al. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. , 1998, Science.
[60] E. Koonin,et al. Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily. , 1998, Genome research.
[61] B. Snel,et al. Conservation of gene order: a fingerprint of proteins that physically interact. , 1998, Trends in biochemical sciences.
[62] R. Herrmann,et al. Gene transfer from organelles to the nucleus: how much, what happens, and Why? , 1998, Plant physiology.
[63] Jianzhi Zhang,et al. A bacterial antibiotic resistance gene with eukaryotic origins , 1998, Current Biology.
[64] E Pennisi,et al. Genome Data Shake Tree of Life , 1998, Science.
[65] John M. Logsdon,et al. Archaeal genomics: Do archaea have a mixed heritage? , 1998, Current Biology.
[66] L. Cavalli-Sforza. The DNA revolution in population genetics. , 1998, Trends in genetics : TIG.
[67] T. Gaasterland,et al. Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes. , 1998, Microbial & comparative genomics.
[68] T Gaasterland,et al. Constructing multigenome views of whole microbial genomes. , 1998, Microbial & comparative genomics.
[69] James R. Brown,et al. Archaea and the prokaryote-to-eukaryote transition. , 1997, Microbiology and molecular biology reviews : MMBR.
[70] D. Söll,et al. Glu-tRNAGln amidotransferase: a novel heterotrimeric enzyme required for correct decoding of glutamine codons during translation. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[71] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.
[72] S. Gould,et al. The exaptive excellence of spandrels as a term and prototype. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[73] H. Ochman,et al. How Salmonella became a pathogen. , 1997, Trends in microbiology.
[74] J. Lawrence. Selfish operons and speciation by gene transfer. , 1997, Trends in microbiology.
[75] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[76] Michael Y. Galperin,et al. Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea , 1997, Molecular microbiology.
[77] Eugene V. Koonin,et al. SEALS: A System for Easy Analysis of Lots of Sequences , 1997, ISMB.
[78] N. Pace. A molecular view of microbial diversity and the biosphere. , 1997, Science.
[79] H. Ochman,et al. Amelioration of Bacterial Genomes: Rates of Change and Exchange , 1997, Journal of Molecular Evolution.
[80] D. Söll,et al. Aminoacyl-tRNA synthesis: divergent routes to a common goal. , 1997, Trends in biochemical sciences.
[81] S. Tabata,et al. Complete genome structure of the unicellular cyanobacterium Synechocystis sp. PCC6803. , 1997, Plant & cell physiology.
[82] G. Dunny,et al. Cell-cell communication in gram-positive bacteria. , 1997, Annual review of microbiology.
[83] Paul Tempst,et al. RSC, an Essential, Abundant Chromatin-Remodeling Complex , 1996, Cell.
[84] E V Koonin,et al. Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics. , 1996, Current opinion in genetics & development.
[85] B. Efron,et al. Bootstrap confidence levels for phylogenetic trees. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[86] B. Efron,et al. Bootstrap confidence levels for phylogenetic trees. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[87] P. Bork,et al. Non-orthologous gene displacement. , 1996, Trends in genetics : TIG.
[88] E V Koonin,et al. Gene order is not conserved in bacterial evolution. , 1996, Trends in genetics : TIG.
[89] G. B. Golding,et al. The origin of the eukaryotic cell. , 1996, Trends in biochemical sciences.
[90] P. Bork,et al. Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli , 1996, Current Biology.
[91] H. Paerl. Microscale physiological and ecological studies of aquatic cyanobacteria: Macroscale implications , 1996, Microscopy research and technique.
[92] J. Felsenstein. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. , 1996, Methods in enzymology.
[93] D. Karl,et al. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii , 1995, Applied and environmental microbiology.
[94] K Kusano,et al. Selfish behavior of restriction-modification systems , 1995, Science.
[95] M. Bibb,et al. Genetics of antibiotic production in Streptomyces coelicolor A3(2), a model streptomycete. , 1995, Biotechnology.
[96] G. B. Golding,et al. Protein-based phylogenies support a chimeric origin for the eukaryotic genome. , 1995, Molecular biology and evolution.
[97] J K Brown,et al. Bootstrap hypothesis tests for evolutionary trees and other dendrograms. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[98] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[99] D. Stahl,et al. Community structure of a microbial mat: the phylogenetic dimension. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[100] M. G. Lorenz,et al. Bacterial gene transfer by natural genetic transformation in the environment. , 1994, Microbiological reviews.
[101] M. Syvanen. Horizontal gene transfer: evidence and possible consequences. , 1994, Annual review of genetics.
[102] T. Hackstadt,et al. Hc1‐mediated effects on DNA structure: a potential regulator of chlamydial development , 1993, Molecular microbiology.
[103] J. Ito,et al. Compilation, alignment, and phylogenetic relationships of DNA polymerases. , 1993, Nucleic acids research.
[104] J. Gogarten,et al. Horizontal transfer of ATPase genes--the tree of life becomes a net of life. , 1993, Bio Systems.
[105] R F Doolittle,et al. Evolution by acquisition: the case for horizontal gene transfers. , 1992, Trends in biochemical sciences.
[106] M W Gray,et al. The endosymbiont hypothesis revisited. , 1992, International review of cytology.
[107] A. Danchin,et al. Evidence for horizontal gene transfer in Escherichia coli speciation. , 1991, Journal of molecular biology.
[108] G. Sprague,,et al. Genetic exchange between kingdoms. , 1991, Current opinion in genetics & development.
[109] C. Patterson. Homology in classical and molecular biology. , 1988, Molecular biology and evolution.
[110] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[111] M. Syvanen,et al. Cross-species gene transfer; implications for a new theory of evolution. , 1985, Journal of theoretical biology.
[112] D. Hartl,et al. Accessory DNAs in the bacterial gene pool: playground for coevolution. , 1984, Ciba Foundation symposium.
[113] M. Gouy,et al. Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type. , 1980, Nucleic acids research.
[114] M. Gouy,et al. Codon catalog usage and the genome hypothesis. , 1980, Nucleic acids research.
[115] L. Margulis,et al. Possible evolutionary significance of spirochaetes , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.
[116] O. Avery,et al. STUDIES ON THE CHEMICAL NATURE OF THE SUBSTANCE INDUCING TRANSFORMATION OF PNEUMOCOCCAL TYPES , 1944, The Journal of experimental medicine.