Retromer Combinatorials for Gene-Therapy Across a Spectrum of Neurological Diseases

Endosomal trafficking is a biological pathway implicated in Alzheimer’s and Parkinson’s disease, and a growing number of other neurological disorders. For this category of diseases, the endosome’s trafficking complex retromer has emerged as a validated therapeutic target. Retromer’s core is a heterotrimeric complex composed of the scaffold protein VPS35 to which VPS26 and VPS29 bind. Unless it is deficient, increasing expression of VPS35 by viral vectors has a limited effect on other trimeric members and on retromer’s overall function. Here we set out to address these constraints and, based on prior insight, hypothesized that co-expressing VPS35 and VPS26 would synergistically interact and elevate retromer’s trimeric expression and function. Neurons, however, are distinct in expressing two VPS26 paralogs, VPS26a and VPS26b, and so to test the hypothesis we generated three novel AAV9 vectors harboring the VPS35, or VPS26a, or VPS26b transgene. First, we optimized their expression in neuroblastoma cell lines, then, in a comprehensive series of neuronal culture experiments, we expressed VPS35, VPS26a, and VPS26b individually and in all possible combinations. Confirming our hypothesis, expressing individual proteins failed to affect the trimer, while VPS35 and VPS26 combinatorials synergized the trimer’s expression. In addition, we illustrate functional synergy by showing that only VPS35 and VPS26 combinatorials significantly increase levels of Sorl1, a key retromer-receptor deficient in Alzheimer’s disease. Collectively, and together with other recent observations, these results suggest a precision-medicine logic when applying retromer gene therapy to a host of neurological disorders, depending on each disorder’s specific retromer-related molecular and anatomical phenotype.

[1]  J. Bonifacino,et al.  The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain , 2006, Nature Structural &Molecular Biology.

[2]  A. Jalanko,et al.  Neuronal ceroid lipofuscinoses. , 2009, Biochimica et biophysica acta.

[3]  A. Milnerwood,et al.  Altered dopamine release and monoamine transporters in Vps35 p.D620N knock-in mice , 2018, npj Parkinson's Disease.

[4]  S. Emr,et al.  A bipartite sorting signal ensures specificity of retromer complex in membrane protein recycling , 2019, The Journal of cell biology.

[5]  G. Petsko,et al.  Retromer in Alzheimer disease, Parkinson disease and other neurological disorders , 2015, Nature Reviews Neuroscience.

[6]  W. M. van der Flier,et al.  Characterization of pathogenic SORL1 genetic variants for association with Alzheimer’s disease: a clinical interpretation strategy , 2017, European Journal of Human Genetics.

[7]  N. Hattori,et al.  VPS29–VPS35 intermediate of retromer is stable and may be involved in the retromer complex assembly process , 2015, FEBS letters.

[8]  C. Burd,et al.  Retromer: a master conductor of endosome sorting. , 2014, Cold Spring Harbor perspectives in biology.

[9]  C. Reitz An Alzheimer’s linked loss‐of‐function CLN5 variant impairs Cathepsin D maturation consistent with a retromer trafficking defect , 2020 .

[10]  C. Halldin,et al.  Molecular Imaging of the Dopamine Transporter , 2010, The Journal of Nuclear Medicine.

[11]  Damian Szklarczyk,et al.  Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell‐lines , 2015, Proteomics.

[12]  Aviv Regev,et al.  A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. , 2015, Molecular cell.

[13]  R. Ceravolo,et al.  Molecular Imaging of the Dopamine Transporter , 2019, Cells.

[14]  G. Petsko,et al.  RETROMER REPLETION WITH AAV9-VPS35 RESTORES ENDOSOMAL FUNCTION IN THE MOUSE HIPPOCAMPUS , 2019, Alzheimer's & Dementia.

[15]  T. Graham,et al.  Mammalian retromer is an adaptable scaffold for cargo sorting from endosomes , 2019, bioRxiv.

[16]  G. Petsko,et al.  Pharmacological chaperones stabilize retromer to limit APP processing. , 2014, Nature chemical biology.

[17]  E. Eisenberg,et al.  The multivesicular body is the major internal site of prion conversion , 2015, Journal of Cell Science.

[18]  Marc N. Offman,et al.  A mutation in VPS35, encoding a subunit of the retromer complex, causes late-onset Parkinson disease. , 2011, American journal of human genetics.

[19]  S. Leurgans,et al.  Neuronal LR11/sorLA expression is reduced in mild cognitive impairment , 2007, Annals of neurology.

[20]  D. Praticò,et al.  The retromer complex system in a transgenic mouse model of AD: influence of age , 2017, Neurobiology of Aging.

[21]  K. Marder,et al.  RAB7L1 Interacts with LRRK2 to Modify Intraneuronal Protein Sorting and Parkinson’s Disease Risk , 2013, Neuron.

[22]  C. Blackstone,et al.  Hereditary spastic paraplegias: membrane traffic and the motor pathway , 2011, Nature Reviews Neuroscience.

[23]  R. Klein,et al.  Expansive gene transfer in the rat CNS rapidly produces amyotrophic lateral sclerosis relevant sequelae when TDP-43 is overexpressed. , 2010, Molecular therapy : the journal of the American Society of Gene Therapy.

[24]  T. Montine,et al.  LR11/SorLA Expression Is Reduced in Sporadic Alzheimer Disease but not in Familial Alzheimer Disease , 2006, Journal of neuropathology and experimental neurology.

[25]  A. Ting,et al.  The Dopamine Transporter Recycles via a Retromer-Dependent Postendocytic Mechanism: Tracking Studies Using a Novel Fluorophore-Coupling Approach , 2017, The Journal of Neuroscience.

[26]  G. Petsko,et al.  Stabilizing the Retromer Complex in a Human Stem Cell Model of Alzheimer’s Disease Reduces TAU Phosphorylation Independently of Amyloid Precursor Protein , 2018, Stem cell reports.

[27]  C. van Broeckhoven,et al.  Endocytic disturbances distinguish among subtypes of alzheimer's disease and related disorders , 2001, Annals of neurology.

[28]  R. Teasdale,et al.  A Novel Mammalian Retromer Component, Vps26B , 2005, Traffic.

[29]  M. King,et al.  Dose and Promoter Effects of Adeno-Associated Viral Vector for Green Fluorescent Protein Expression in the Rat Brain , 2002, Experimental Neurology.

[30]  D. Praticò,et al.  Full recovery of the Alzheimer’s disease phenotype by gain of function of Vacuolar Protein Sorting 35 , 2019, Molecular Psychiatry.

[31]  A. Levey,et al.  Loss of apolipoprotein E receptor LR11 in Alzheimer disease. , 2004, Archives of neurology.

[32]  Lili Wang,et al.  Novel adeno-associated viruses from rhesus monkeys as vectors for human gene therapy , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[33]  C. Blackstone,et al.  Hereditary spastic paraplegias: membrane traffic and the motor pathway , 2011, Nature Reviews Neuroscience.

[34]  H. Bellen,et al.  Phospholipase PLA2G6, a Parkinsonism-Associated Gene, Affects Vps26 and Vps35, Retromer Function, and Ceramide Levels, Similar to α-Synuclein Gain. , 2018, Cell metabolism.

[35]  J. Ebina,et al.  Dopamine Transporter Imaging in Parkinson Disease: Progressive Changes and Therapeutic Modification after Anti-parkinsonian Medications , 2019, Internal medicine.

[36]  M. Farrer,et al.  VPS35 mutations in Parkinson disease. , 2011, American journal of human genetics.

[37]  C. Reitz,et al.  Endosomal Trafficking in Alzheimer's Disease, Parkinson's Disease, and Neuronal Ceroid Lipofuscinosis , 2020, Molecular and Cellular Biology.

[38]  M. Muqit,et al.  Parkinson's: A Disease of Aberrant Vesicle Trafficking. , 2020, Annual review of cell and developmental biology.

[39]  L. Honig,et al.  Model‐guided microarray implicates the retromer complex in Alzheimer's disease , 2005, Annals of neurology.

[40]  Michael J. Cowan,et al.  Haploinsufficiency leads to neurodegeneration in C9ORF72 ALS/FTD human induced motor neurons , 2018, Nature Medicine.

[41]  J. Fak,et al.  A Large Panel of Isogenic APP and PSEN1 Mutant Human iPSC Neurons Reveals Shared Endosomal Abnormalities Mediated by APP β-CTFs, Not Aβ , 2019, Neuron.

[42]  L. Honig,et al.  Tau and other proteins found in Alzheimer’s disease spinal fluid are linked to retromer-mediated endosomal traffic in mice and humans , 2020, Science Translational Medicine.

[43]  S. Lipton,et al.  Loss of sorting nexin 27 contributes to excitatory synaptic dysfunction via modulation of glutamate receptor recycling in Down syndrome , 2013, Nature Medicine.

[44]  C. Farquharson,et al.  Total Protein Analysis as a Reliable Loading Control for Quantitative Fluorescent Western Blotting , 2013, PloS one.

[45]  R. Teasdale,et al.  Structure of the membrane-assembled retromer coat determined by cryo-electron tomography , 2018, Nature.

[46]  R. Teasdale,et al.  Structure of Vps26B and Mapping of its Interaction with the Retromer Protein Complex , 2008, Traffic.

[47]  Daohai Yu,et al.  Dysregulation of the Retromer Complex System in Down Syndrome , 2020, Annals of neurology.

[48]  D. Berman,et al.  An Alzheimer's Disease-Linked Loss-of-Function CLN5 Variant Impairs Cathepsin D Maturation, Consistent with a Retromer Trafficking Defect , 2018, Molecular and Cellular Biology.

[49]  S. Small,et al.  The location and trafficking routes of the neuronal retromer and its role in amyloid precursor protein transport , 2012, Neurobiology of Disease.

[50]  D. Campion,et al.  De novo deleterious genetic variations target a biological network centered on Aβ peptide in early-onset Alzheimer disease , 2015, Molecular Psychiatry.

[51]  G. Comi,et al.  Retromer stabilization results in neuroprotection in a model of Amyotrophic Lateral Sclerosis , 2020, Nature Communications.

[52]  M. Seaman,et al.  Recycle your receptors with retromer. , 2005, Trends in cell biology.

[53]  P. Durrenberger,et al.  Analysis of RNA Expression Profiles Identifies Dysregulated Vesicle Trafficking Pathways in Creutzfeldt-Jakob Disease , 2018, Molecular Neurobiology.

[54]  G. Petsko,et al.  Cholera toxin inhibits SNX27-retromer-mediated delivery of cargo proteins to the plasma membrane , 2018, Journal of Cell Science.

[55]  E. D. Kirby,et al.  Adult hippocampal neural stem and progenitor cells regulate the neurogenic niche by secreting VEGF , 2015, Proceedings of the National Academy of Sciences.

[56]  David H Burkhardt,et al.  Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources , 2014, Cell.

[57]  G. Petsko,et al.  Endosomal Traffic Jams Represent a Pathogenic Hub and Therapeutic Target in Alzheimer’s Disease , 2017, Trends in Neurosciences.