High‐throughput RNA sequencing reveals structural differences of orthologous brain‐expressed genes between western lowland gorillas and humans
暂无分享,去创建一个
C. Mason | P. Hof | D. Wildman | C. Sherwood | L. Lipovich | C. Kuzawa | M. Goodman | H. Jia | L. Grossman | M. McGowen | L. Pipes | K. N. Sterner | Z. hou | Christopher A Sinkler | Amy Weckle | Amara B Sugalski | D. Gatti | Z. Hou | Hui Jia | K. Sterner
[1] Thomas C Roberts,et al. The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease , 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.
[2] P. Hof,et al. Metabolic costs and evolutionary implications of human brain development , 2014, Proceedings of the National Academy of Sciences.
[3] Allan R. Jones,et al. A High-Resolution Spatiotemporal Atlas of Gene Expression of the Developing Mouse Brain , 2014, Neuron.
[4] Andrew S. Burrell,et al. Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes. , 2014, Molecular phylogenetics and evolution.
[5] J. Call,et al. Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness , 2014, PLoS biology.
[6] P. Ellen Grant,et al. Evolutionarily Dynamic Alternative Splicing of GPR56 Regulates Regional Cerebral Cortical Patterning , 2014, Science.
[7] A. Bullock,et al. New strategies to inhibit KEAP1 and the Cul3-based E3 ubiquitin ligases , 2014, Biochemical Society transactions.
[8] P. Hof,et al. Aerobic glycolysis in the primate brain: reconsidering the implications for growth and maintenance , 2014, Brain Structure and Function.
[9] Patrick R Hof,et al. Alzheimer's disease pathology in the neocortex and hippocampus of the western lowland gorilla (Gorilla gorilla gorilla) , 2013, The Journal of comparative neurology.
[10] L. Lipovich,et al. Sense-antisense gene pairs: sequence, transcription, and structure are not conserved between human and mouse , 2013, Front. Genet..
[11] Anushya Muruganujan,et al. Large-scale gene function analysis with the PANTHER classification system , 2013, Nature Protocols.
[12] H. Kaessmann,et al. Evolution of the Correlation between Expression Divergence and Protein Divergence in Mammals , 2013, Genome biology and evolution.
[13] E. Lai,et al. Widespread and extensive lengthening of 3′ UTRs in the mammalian brain , 2013, Genome research.
[14] P. Hof,et al. Early Brain Growth Cessation in Wild Virunga Mountain Gorillas (Gorilla beringei beringei) , 2013, American journal of primatology.
[15] Jean Thierry-Mieg,et al. The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics , 2012, Nucleic Acids Res..
[16] A. Lösch. Nano , 2012, Ortsregister.
[17] Jungsuk Kim,et al. Recent advances in nanopore sequencing , 2012, Electrophoresis.
[18] L. Lipovich,et al. Activity-Dependent Human Brain Coding/Noncoding Gene Regulatory Networks , 2012, Genetics.
[19] Daniel J. Miller,et al. Prolonged myelination in human neocortical evolution , 2012, Proceedings of the National Academy of Sciences.
[20] Allan R. Jones,et al. An anatomically comprehensive atlas of the adult human brain transcriptome , 2012, Nature.
[21] D. Geschwind,et al. Human-Specific Transcriptional Networks in the Brain , 2012, Neuron.
[22] R. Cristescu,et al. Recovery Potential of a Western Lowland Gorilla Population following a Major Ebola Outbreak: Results from a Ten Year Study , 2012, PloS one.
[23] S. Pääbo,et al. Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques. , 2012, Genome research.
[24] Albert J. Vilella,et al. Insights into hominid evolution from the gorilla genome sequence , 2012, Nature.
[25] T. J. Robinson,et al. Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification , 2011, Science.
[26] J. Kleinman,et al. Spatiotemporal transcriptome of the human brain , 2011, Nature.
[27] S. Bergmann,et al. The evolution of gene expression levels in mammalian organs , 2011, Nature.
[28] D. Wildman,et al. Silencing, Positive Selection and Parallel Evolution: Busy History of Primate Cytochromes c , 2011, PloS one.
[29] Albert J. Vilella,et al. A high-resolution map of human evolutionary constraint using 29 mammals , 2011, Nature.
[30] Ozlem Keskin,et al. Molecular Recognition of H3/H4 Histone Tails by the Tudor Domains of JMJD2A: A Comparative Molecular Dynamics Simulations Study , 2011, PloS one.
[31] S. Miura,et al. Effect of exercise intensity and AICAR on isoform-specific expressions of murine skeletal muscle PGC-1α mRNA: a role of β₂-adrenergic receptor activation. , 2011, American journal of physiology. Endocrinology and metabolism.
[32] Junwu Zhang,et al. Hypoxia‐inducible factor 1‐mediated regulation of PPP1R3C promotes glycogen accumulation in human MCF‐7 cells under hypoxia , 2010, FEBS letters.
[33] P. Weydt,et al. The Role of PGC-1α in the Pathogenesis of Neurodegenerative Disorders , 2010 .
[34] J. Rayner,et al. Origin of the human malaria parasite Plasmodium falciparum in gorillas , 2010, Nature.
[35] Leonard Lipovich,et al. MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA. , 2010, Biochimica et biophysica acta.
[36] Leonard Lipovich,et al. Genome-wide computational identification and manual annotation of human long noncoding RNA genes. , 2010, RNA.
[37] P. Puigserver,et al. Nutrient-dependent regulation of PGC-1alpha's acetylation state and metabolic function through the enzymatic activities of Sirt1/GCN5. , 2010, Biochimica et biophysica acta.
[38] Marc Fellous,et al. Genetic male infertility and mutation of CATSPER ion channels , 2010, European Journal of Human Genetics.
[39] J. Neyts,et al. Differential Effects of the Putative GBF1 Inhibitors Golgicide A and AG1478 on Enterovirus Replication , 2010, Journal of Virology.
[40] F. Ayala,et al. African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus , 2010, Proceedings of the National Academy of Sciences.
[41] C. L. Jackson,et al. Poliovirus replication requires the N‐terminus but not the catalytic Sec7 domain of ArfGEF GBF1 , 2010, Cellular microbiology.
[42] M. Siomi,et al. How does the royal family of Tudor rule the PIWI-interacting RNA pathway? , 2010, Genes & development.
[43] M. Guardiola,et al. APOH is increased in the plasma and liver of type 2 diabetic patients with metabolic syndrome. , 2010, Atherosclerosis.
[44] Huanming Yang,et al. De novo assembly of human genomes with massively parallel short read sequencing. , 2010, Genome research.
[45] M. Stephens,et al. Sex-specific and lineage-specific alternative splicing in primates. , 2010, Genome research.
[46] L. Fajas,et al. The CDK4-pRB-E2F1 pathway : A new modulator of insulin secretion , 2010, Islets.
[47] Patrick R Hof,et al. Role of vascular risk factors and vascular dysfunction in Alzheimer's disease. , 2010, The Mount Sinai journal of medicine, New York.
[48] P. Weydt,et al. The role of PGC-1α in the pathogenesis of neurodegenerative disorders. , 2010, Current drug targets.
[49] Richard A. Moore,et al. The Completion of the Mammalian Gene Collection (mgc) Recommended Citation , 2022 .
[50] Eileen Maloney,et al. A panel of neuron-enriched proteins as markers for traumatic brain injury in humans. , 2009, Journal of neurotrauma.
[51] Jon W. Huss,et al. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources , 2009, Genome Biology.
[52] C. Boesch,et al. Molecular Epidemiology of Simian Immunodeficiency Virus Infection in Wild-Living Gorillas , 2009, Journal of Virology.
[53] P. Roingeard,et al. Identification of GBF1 as a Cellular Factor Required for Hepatitis C Virus RNA Replication , 2009, Journal of Virology.
[54] E. Eichler,et al. The origins and impact of primate segmental duplications. , 2009, Trends in genetics : TIG.
[55] Zane Z. Zheng,et al. The functional specialization of the planum temporale. , 2009, Journal of neurophysiology.
[56] J. Klein,et al. Alternative mRNA Splicing Produces a Novel Biologically Active Short Isoform of PGC-1α* , 2009, The Journal of Biological Chemistry.
[57] Eran Segal,et al. Proteome-wide prediction of acetylation substrates , 2009, Proceedings of the National Academy of Sciences.
[58] L. Lipovich,et al. Global discovery of primate-specific genes in the human genome , 2009, Proceedings of the National Academy of Sciences.
[59] W. Swanson,et al. Coevolution of Interacting Fertilization Proteins , 2009, PLoS genetics.
[60] S. Rivest. Regulation of innate immune responses in the brain , 2009, Nature Reviews Immunology.
[61] Y. Matsuki,et al. Identification and characterization of an alternative promoter of the human PGC-1alpha gene. , 2009, Biochemical and biophysical research communications.
[62] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[63] G. Thomas,et al. Osteocrin – Beyond just another bone protein? , 2009, Cellular and Molecular Life Sciences.
[64] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[65] Y. Fukushima,et al. Agonist‐induced internalization of histamine H2 receptor and activation of extracellular signal‐regulated kinases are dynamin‐dependent , 2008, Journal of neurochemistry.
[66] L. Lipovich,et al. Structural differences of orthologous genes: insights from human-primate comparisons. , 2008, Genomics.
[67] Y. Kamei,et al. Isoform-specific increases in murine skeletal muscle peroxisome proliferator-activated receptor-gamma coactivator-1alpha (PGC-1alpha) mRNA in response to beta2-adrenergic receptor activation and exercise. , 2008, Endocrinology.
[68] M. Laakso,et al. Genetic study between SIRT1, PPARD, PGC-1α genes and Alzheimer’s disease , 2008, Journal of Neurology.
[69] Mark Johnson,et al. NCBI BLAST: a better web interface , 2008, Nucleic Acids Res..
[70] J. Moss,et al. Unfolded protein response and cell death after depletion of brefeldin A-inhibited guanine nucleotide-exchange protein GBF1 , 2008, Proceedings of the National Academy of Sciences.
[71] P. Puigserver,et al. Metabolic adaptations through the PGC‐1α and SIRT1 pathways , 2008 .
[72] P. Puigserver,et al. Metabolic adaptations through the PGC-1 alpha and SIRT1 pathways. , 2008, FEBS letters.
[73] P. Hof,et al. Molecular evolution of the cytochrome c oxidase subunit 5A gene in primates , 2008, BMC Evolutionary Biology.
[74] Yi Xing,et al. Global analysis of alternative splicing differences between humans and chimpanzees. , 2007, Genes & development.
[75] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[76] Colin N. Dewey,et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. , 2007, Genome research.
[77] B. Spiegelman. Transcriptional control of mitochondrial energy metabolism through the PGC1 coactivators. , 2007, Novartis Foundation symposium.
[78] Jiandie D. Lin,et al. Suppression of Reactive Oxygen Species and Neurodegeneration by the PGC-1 Transcriptional Coactivators , 2006, Cell.
[79] Jean Thierry-Mieg,et al. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs , 2006, Nucleic acids research.
[80] Sin Lam Tan,et al. Complex Loci in Human and Mouse Genomes , 2006, PLoS genetics.
[81] R. Sorek,et al. Transcription-mediated gene fusion in the human genome. , 2005, Genome research.
[82] S. Pääbo,et al. Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees , 2005, Science.
[83] D. Page,et al. RNF17, a component of the mammalian germ cell nuage, is essential for spermiogenesis , 2005, Development.
[84] D. Wildman,et al. Rapid electrostatic evolution at the binding site for cytochrome c on cytochrome c oxidase in anthropoid primates. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[85] 大房 健. 基礎講座 電気泳動(Electrophoresis) , 2005 .
[86] Wilhelm Haas,et al. Nutrient control of glucose homeostasis through a complex of PGC-1α and SIRT1 , 2005, Nature.
[87] P. Stogios,et al. The BACK domain in BTB-kelch proteins. , 2004, Trends in biochemical sciences.
[88] D. Wildman,et al. Accelerated evolution of the electron transport chain in anthropoid primates. , 2004, Trends in genetics : TIG.
[89] B. Su,et al. Recent origin of a hominoid-specific splice form of neuropsin, a gene involved in learning and memory. , 2004, Molecular biology and evolution.
[90] D. Geschwind,et al. Human brain evolution: insights from microarrays , 2004, Nature Reviews Genetics.
[91] J. Morrison,et al. The aging brain: morphomolecular senescence of cortical circuits , 2004, Trends in Neurosciences.
[92] Cheuk Y. Tang,et al. Brain structure variation in great apes, with attention to the mountain gorilla (Gorilla beringei beringei) , 2004, American journal of primatology.
[93] M. Hattori,et al. DNA sequence and comparative analysis of chimpanzee chromosome 22 , 2004, Nature.
[94] Wenbo Xu,et al. Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[95] C. Ji,et al. Molecular cloning and characterization of a novel human BTBD8 gene containing double BTB/POZ domains. , 2004, International journal of molecular medicine.
[96] N. Nomura,et al. Complete sequencing and characterization of 21,243 full-length human cDNAs , 2004, Nature Genetics.
[97] Matthew A. Zapala,et al. Elevated gene expression levels distinguish human from non-human primate brains , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[98] J. Morrison,et al. Progressive degeneration of nonphosphorylated neurofilament protein‐enriched pyramidal neurons predicts cognitive impairment in Alzheimer's disease: Stereologic analysis of prefrontal cortex area 9 , 2003, The Journal of comparative neurology.
[99] J. Morrison,et al. Stereologic analysis of neurofibrillary tangle formation in prefrontal cortex area 9 in aging and Alzheimer’s disease , 2003, Neuroscience.
[100] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[101] S. Pääbo,et al. Intra- and Interspecific Variation in Primate Gene Expression Patterns , 2002, Science.
[102] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[103] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[104] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.
[105] L. Cooley,et al. The kelch repeat superfamily of proteins: propellers of cell function. , 2000, Trends in cell biology.
[106] B. Roe,et al. Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts. , 1999, Genome research.
[107] Thomas L. Madden,et al. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. , 1999, FEMS microbiology letters.
[108] J. Rilling,et al. Planum temporale asymmetries in great apes as revealed by magnetic resonance imaging (MRI) , 1998, Neuroreport.
[109] C. Groves,et al. Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. , 1998, Molecular phylogenetics and evolution.
[110] A. Braun,et al. Asymmetry of chimpanzee planum temporale: humanlike pattern of Wernicke's brain language area homolog. , 1998, Science.
[111] G. Privé,et al. The BTB domain, found primarily in zinc finger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in Drosophila. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[112] F. Collins,et al. Differential phylogenetic footprinting as a means to identify base changes responsible for recruitment of the anthropoid gamma gene to a fetal expression pattern. , 1994, The Journal of biological chemistry.
[113] Kevin Cox,et al. Quantitative analysis of a vulnerable subset of pyramidal neurons in Alzheimer's disease: I. Superior frontal and inferior temporal cortex , 1990, The Journal of comparative neurology.
[114] F. Collins,et al. The -175T----C mutation increases promoter strength in erythroid cells: correlation with evolutionary conservation of binding sites for two trans-acting factors. , 1990, Blood.
[115] U. Thorgeirsson,et al. Chemical carcinogenesis studies in nonhuman primates. , 2008, Basic life sciences.
[116] M. King,et al. Evolution at two levels in humans and chimpanzees. , 1975, Science.
[117] The Journal of Comparative Neurology , 1899, The American Naturalist.