Phosphorylations of Cyclin-dependent Kinase 2 Revisited Using Two-dimensional Gel Electrophoresis*

To control the G1/S transition and the progression through the S phase, the activation of the cyclin-dependent kinase (CDK) 2 involves the binding of cyclin E then cyclin A, the activating Thr-160 phosphorylation within the T-loop by CDK-activating kinase (CAK), inhibitory phosphorylations within the ATP binding region at Tyr-15 and Thr-14, dephosphorylation of these sites by cdc25A, and release from Cip/Kip family (p27kip1 and p21cip1) CDK inhibitors. To re-assess the precise relationship between the different phosphorylations of CDK2, and the influence of cyclins and CDK inhibitors upon them, we introduce here the use of the high resolution power of two-dimensional gel electrophoresis, combined to Tyr-15- or Thr-160-phosphospecific antibodies. The relative proportions of the potentially active forms of CDK2 (phosphorylated at Thr-160 but not Tyr-15) and inactive forms (non-phosphorylated, phosphorylated only at Tyr-15, or at both Tyr-15 and Thr-160), and their respective association with cyclin E, cyclin A, p21, and p27, were demonstrated during the mitogenic stimulation of normal human fibroblasts. Novel observations modify the current model of the sequential CDK2 activation process: (i) Tyr-15 phosphorylation induced by serum was not restricted to cyclin-bound CDK2; (ii) Thr-160 phosphorylation engaged the entirety of Tyr-15-phosphorylated CDK2 associated not only with a cyclin but also with p27 and p21, suggesting that Cip/Kip proteins do not prevent CDK2 activity by impairing its phosphorylation by CAK; (iii) the potentially active CDK2 phosphorylated at Thr-160 but not Tyr-15 represented a tiny fraction of total CDK2 and a minor fraction of cyclin A-bound CDK2, underscoring the rate-limiting role of Tyr-15 dephosphorylation by cdc25A.

[1]  J M Ribeiro,et al.  Isoelectric points of proteins: theoretical determination. , 1989, Analytical biochemistry.

[2]  J. Bartek,et al.  Distinct Phosphorylation Events Regulate p130- and p107-mediated Repression of E2F-4* , 2002, The Journal of Biological Chemistry.

[3]  S. Kornbluth,et al.  Regulatory roles of cyclin dependent kinase phosphorylation in cell cycle control. , 1996, Current opinion in cell biology.

[4]  M. Nakanishi,et al.  Cell cycle-dependent and ATM-independent expression of human Chk1 kinase , 1999, Oncogene.

[5]  James M. Roberts,et al.  Human cyclin E, a nuclear protein essential for the G1-to-S phase transition , 1995, Molecular and cellular biology.

[6]  Michael S. Deal,et al.  Activation mechanism of CDK2: role of cyclin binding versus phosphorylation. , 2002, Biochemistry.

[7]  David O. Morgan,et al.  A novel cyclin associates with M015/CDK7 to form the CDK-activating kinase , 1994, Cell.

[8]  Y. Xiong,et al.  Cell cycle expression and p53 regulation of the cyclin-dependent kinase inhibitor p21. , 1994, Oncogene.

[9]  S. Wick,et al.  Mechanism of Cdk2/Cyclin E inhibition by p27 and p27 phosphorylation. , 1999, Biochemistry.

[10]  P. Kaldis,et al.  Transforming growth factor beta targeted inactivation of cyclin E:cyclin-dependent kinase 2 (Cdk2) complexes by inhibition of Cdk2 activating kinase activity. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[11]  J. Bartek,et al.  Chk1 regulates the S phase checkpoint by coupling the physiological turnover and ionizing radiation-induced accelerated proteolysis of Cdc25A. , 2003, Cancer cell.

[12]  T. Albrecht,et al.  Cyclin E/Cdk2 activity is controlled by different mechanisms in the G0 and G1 phases of the cell cycle. , 1996, Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research.

[13]  J. Roberts,et al.  Identification of a substrate-targeting domain in cyclin E necessary for phosphorylation of the retinoblastoma protein. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[14]  J. Parvin,et al.  Human CDC6/Cdc18 Associates with Orc1 and Cyclin-cdk and Is Selectively Eliminated from the Nucleus at the Onset of S Phase , 1998, Molecular and Cellular Biology.

[15]  B. Dynlacht,et al.  Activity and nature of p21(WAF1) complexes during the cell cycle. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[16]  R. Weinberg,et al.  The retinoblastoma protein and cell cycle control , 1995, Cell.

[17]  N Watanabe,et al.  Regulation of the human WEE1Hu CDK tyrosine 15‐kinase during the cell cycle. , 1995, The EMBO journal.

[18]  G. Biamonti,et al.  Cell cycle‐dependent dynamic association of cyclin/Cdk complexes with human DNA replication proteins , 2002, The EMBO journal.

[19]  V. Dulic,et al.  Differential Roles for Cyclin-Dependent Kinase Inhibitors p21 and p16 in the Mechanisms of Senescence and Differentiation in Human Fibroblasts , 1999, Molecular and Cellular Biology.

[20]  J. Bartek,et al.  Mammalian G1- and S-phase checkpoints in response to DNA damage. , 2001, Current opinion in cell biology.

[21]  G. Hannon,et al.  p21-containing cyclin kinases exist in both active and inactive states. , 1994, Genes & development.

[22]  A. Görg,et al.  The current state of two‐dimensional electrophoresis with immobilized pH gradients , 2000, Electrophoresis.

[23]  M. Murata,et al.  c‐Fos/activator protein‐1 transactivates wee1 kinase at G1/S to inhibit premature mitosis in antigen‐specific Th1 cells , 2001, EMBO Journal.

[24]  C. Cans,et al.  Evidence for a mammalian Nim1-like kinase pathway acting at the G0-1/S transition. , 1997, Biochemical and biophysical research communications.

[25]  N. Mailand,et al.  Rapid destruction of human Cdc25A in response to DNA damage. , 2000, Science.

[26]  B. Kennedy,et al.  NPAT links cyclin E-Cdk2 to the regulation of replication-dependent histone gene transcription. , 2000, Genes & development.

[27]  John A. Tainer,et al.  Kinetic Mechanism of Activation of the Cdk2/Cyclin A Complex , 2002, The Journal of Biological Chemistry.

[28]  S. Reed,et al.  Regulation of G(1) cyclin-dependent kinases in the mammalian cell cycle. , 2000, Current opinion in cell biology.

[29]  James M. Roberts,et al.  CDK inhibitors: positive and negative regulators of G1-phase progression. , 1999, Genes & development.

[30]  M. Kitagawa,et al.  Cyclin-dependent kinase-2 (Cdk2) forms an inactive complex with cyclin D1 since Cdk2 associated with cyclin D1 is not phosphorylated by Cdk7-cyclin-H. , 1996, European journal of biochemistry.

[31]  Kornelia Polyak,et al.  Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex , 1995, Nature.

[32]  James M. Roberts,et al.  Cloning of p27 Kip1 , a cyclin-dependent kinase inhibitor and a potential mediator of extracellular antimitogenic signals , 1994, Cell.

[33]  D. Hochstrasser,et al.  The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences , 1993, Electrophoresis.

[34]  R Pepperkok,et al.  Regulation of the cell cycle by the cdk2 protein kinase in cultured human fibroblasts , 1993, The Journal of cell biology.

[35]  Y. Ishimi,et al.  Phosphorylation of Mcm4 at Specific Sites by Cyclin-dependent Kinase Leads to Loss of Mcm4,6,7 Helicase Activity* , 2001, The Journal of Biological Chemistry.

[36]  James M. Roberts,et al.  Cyclin E-CDK2 is a regulator of p27Kip1. , 1997, Genes & development.

[37]  Sibylle Mittnacht,et al.  Differential Phosphorylation of the Retinoblastoma Protein by G1/S Cyclin-dependent Kinases* , 1997, The Journal of Biological Chemistry.

[38]  Margaret S. Lee,et al.  Cyclin promotes the tyrosine phosphorylation of p34cdc2 in a wee1+ dependent manner. , 1991, The EMBO journal.

[39]  N. Pavletich,et al.  Human and yeast cdk-activating kinases (CAKs) display distinct substrate specificities. , 1998, Molecular biology of the cell.

[40]  Y. Xiong,et al.  Both p16 and p21 Families of Cyclin-dependent Kinase (CDK) Inhibitors Block the Phosphorylation of Cyclin-dependent Kinases by the CDK-activating Kinase (*) , 1995, The Journal of Biological Chemistry.

[41]  Anindya Dutta,et al.  Inhibition of cdk2 Activating Phosphorylation by Mevastatin* , 2003, The Journal of Biological Chemistry.

[42]  Philip D. Jeffrey,et al.  Crystal structure of the p27Kip1 cyclin-dependent-kinase inibitor bound to the cyclin A–Cdk2 complex , 1996, Nature.

[43]  E. Gianazza,et al.  Isoelectric focusing as a tool for the investigation of post-translational processing and chemical modifications of proteins. , 1995, Journal of chromatography. A.

[44]  R. Laskey,et al.  Distinct roles for cyclins E and A during DNA replication complex assembly and activation , 2002, Nature Cell Biology.

[45]  Jiri Bartek,et al.  Phosphorylation of mammalian CDC6 by Cyclin A/CDK2 regulates its subcellular localization , 1999, The EMBO journal.

[46]  Anindya Dutta,et al.  A p53-dependent checkpoint pathway prevents rereplication. , 2003, Molecular cell.

[47]  T. Hunter,et al.  Dephosphorylation of Cdk2 Thr160 by the Cyclin-Dependent Kinase-Interacting Phosphatase KAP in the Absence of Cyclin , 1995, Science.

[48]  H. Leonhardt,et al.  Reversal of terminal differentiation and control of DNA replication: Cyclin A and cdk2 specifically localize at subnuclear sites of DNA replication , 1993, Cell.

[49]  I. Hoffmann,et al.  Cell cycle regulation by the Cdc25 phosphatase family. , 2000, Progress in cell cycle research.

[50]  I. Hoffmann,et al.  Ectopic Expression of Cdc25A Accelerates the G1/S Transition and Leads to Premature Activation of Cyclin E- and Cyclin A-Dependent Kinases , 1999, Molecular and Cellular Biology.

[51]  J. R. Smith,et al.  Complex mechanisms underlying impaired activation of Cdk4 and Cdk2 in replicative senescence: roles of p16, p21, and cyclin D1. , 1999, Experimental cell research.

[52]  N. Pavletich Mechanisms of cyclin-dependent kinase regulation: structures of Cdks, their cyclin activators, and Cip and INK4 inhibitors. , 1999, Journal of molecular biology.

[53]  L. Hengst,et al.  Complete inhibition of Cdk/cyclin by one molecule of p21(Cip1). , 1998, Genes & development.

[54]  M. Solomon The function(s) of CAK, the p34cdc2-activating kinase. , 1994, Trends in biochemical sciences.

[55]  Anindya Dutta,et al.  p21CIP1 and Cdc25A: competition between an inhibitor and an activator of cyclin-dependent kinases , 1997, Molecular and cellular biology.

[56]  M. Solomon,et al.  Comparison of Cak1p-like Cyclin-dependent Kinase-activating Kinases* , 2002, The Journal of Biological Chemistry.

[57]  J. Gannon,et al.  Expression and subcellular localization of CDK2 and cdc2 kinases and their common partner cyclin A in thyroid epithelial cells: Comparison of cyclic AMP‐dependent and ‐independent cell cycles , 1996, Journal of cellular physiology.

[58]  Nathan H. Lents,et al.  Stimulation of the Raf/MEK/ERK Cascade Is Necessary and Sufficient for Activation and Thr-160 Phosphorylation of a Nuclear-targeted CDK2* , 2002, The Journal of Biological Chemistry.

[59]  Lisa M. Stevenson,et al.  Kinetic Basis for Activation of CDK2/Cyclin A by Phosphorylation* , 2001, The Journal of Biological Chemistry.

[60]  Anindya Dutta,et al.  DNA replication in eukaryotic cells. , 2002, Annual review of biochemistry.

[61]  N. Mailand,et al.  The ATM–Chk2–Cdc25A checkpoint pathway guards against radioresistant DNA synthesis , 2001, Nature.

[62]  D. Morgan,et al.  Activation of cyclin-dependent kinase 4 (cdk4) by mouse MO15-associated kinase , 1994, Molecular and cellular biology.

[63]  F. Zindy,et al.  Localization of cyclin A at the sites of cellular DNA replication. , 1993, Experimental cell research.

[64]  P. Jallepalli,et al.  Cyclin-dependent kinase and initiation at eukaryotic origins: a replication switch? , 1997, Current opinion in cell biology.

[65]  D O Morgan,et al.  Cell cycle regulation of CDK2 activity by phosphorylation of Thr160 and Tyr15. , 1992, The EMBO journal.

[66]  S. Elledge,et al.  Inhibition of cyclin-dependent kinases by p21. , 1995, Molecular biology of the cell.

[67]  T. Hunter,et al.  Cdc25M2 activation of cyclin-dependent kinases by dephosphorylation of threonine-14 and tyrosine-15. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[68]  Hui Zhao,et al.  Disruption of the checkpoint kinase 1/cell division cycle 25A pathway abrogates ionizing radiation-induced S and G2 checkpoints , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[69]  Jiri Bartek,et al.  Regulation of G2/M events by Cdc25A through phosphorylation‐dependent modulation of its stability , 2002, The EMBO journal.

[70]  J. Dumont,et al.  Intercellular heterogeneity of early mitogenic events: cAMP generalizes the EGF effect on c-Fos protein appearance but not on MAP kinase phosphorylation and nuclear translocation in dog thyroid epithelial cells. , 1995, Experimental cell research.

[71]  J. Bartek,et al.  Cell cycle analysis of the activity, subcellular localization, and subunit composition of human CAK (CDK-activating kinase) , 1994, The Journal of cell biology.

[72]  S. Reed,et al.  Altered regulation of G1 cyclins in senescent human diploid fibroblasts: accumulation of inactive cyclin E-Cdk2 and cyclin D1-Cdk2 complexes. , 1993, Proceedings of the National Academy of Sciences of the United States of America.