Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
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[1] Oleg N. Reva,et al. Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns , 2004, BMC Bioinformatics.
[2] H. Ochman,et al. Amelioration of Bacterial Genomes: Rates of Change and Exchange , 1997, Journal of Molecular Evolution.
[3] Guy Plunkett,et al. Comparative Genomics of Salmonellaenterica Serovar Typhi Strains Ty2 and CT18 , 2003, Journal of bacteriology.
[4] B. Tümmler,et al. Genome Codon Index of Pseudomonas aeruginosa : A Codon Index That Utilizes Whole Genome Sequence Data , 2002 .
[5] Anders Sjöstedt,et al. The complete genome sequence of Francisella tularensis, the causative agent of tularemia , 2005, Nature Genetics.
[6] D. A. Palmieri,et al. The genome sequence of the plant pathogen Xylella fastidiosa , 2000, Nature.
[7] S. Karlin,et al. Global dinucleotide signatures and analysis of genomic heterogeneity. , 1998, Current opinion in microbiology.
[8] J. R. van der Meer,et al. Genomic islands and the evolution of catabolic pathways in bacteria. , 2003, Current opinion in biotechnology.
[9] O. Ogunseitan,et al. Tetranucleotide frequencies in microbial genomes , 1998, Electrophoresis.
[10] M. Blaser,et al. Evolutionary implications of microbial genome tetranucleotide frequency biases. , 2003, Genome research.
[11] Shigehiko Kanaya,et al. Informatics for unveiling hidden genome signatures. , 2003, Genome research.
[12] General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: application to Pseudomonas putida KT2440. , 2001, Nucleic acids research.
[13] Alexander N. Gorban,et al. Four basic symmetry types in the universal 7-cluster structure of microbial genomic sequences , 2005, Silico Biol..
[14] S M Payne,et al. Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T , 2003, Infection and Immunity.
[15] S. Tabata,et al. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. , 2002, DNA research : an international journal for rapid publication of reports on genes and genomes.
[16] S Karlin,et al. Compositional biases of bacterial genomes and evolutionary implications , 1997, Journal of bacteriology.
[17] M. Blaser,et al. Identification of Horizontally Acquired Genetic Elements in Helicobacter pylori and Other Prokaryotes Using Oligonucleotide Difference Analysis , 2002 .
[18] Frank Oliver Glöckner,et al. TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences , 2004, BMC Bioinformatics.
[19] K. Nelson,et al. Global features of the Pseudomonas putida KT2440 genome sequence. , 2002, Environmental microbiology.
[20] J. Klockgether,et al. Sequence Analysis of the Mobile Genome Island pKLC102 of Pseudomonas aeruginosa C , 2004, Journal of bacteriology.
[21] Y. Nakamura,et al. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. , 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.
[22] J. Hacker,et al. Pathogenicity islands and the evolution of microbes. , 2000, Annual review of microbiology.
[23] D. Ussery,et al. Comparative Genomics of Pseudomonas aeruginosa PAO1 and Pseudomonas putida KT2440: Orthologs, Codon Usage, Repetitive Extragenic Palindromic Elements, and Oligonucleotide Motif Signatures , 2002 .
[24] Alessandra Carbone,et al. Codon adaptation index as a measure of dominating codon bias , 2003, Bioinform..
[25] Nicole T. Perna,et al. Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7 , 1998, Infection and Immunity.
[26] Tsutomu Sato,et al. The ars Operon in the skinElement of Bacillus subtilis Confers Resistance to Arsenate and Arsenite , 1998, Journal of bacteriology.