AP-SWATH Reveals Direct Involvement of VCP/p97 in Integrated Stress Response Signaling Through Facilitating CReP/PPP1R15B Degradation *
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Ben C. Collins | R. Aebersold | M. Gstaiger | H. Meyer | J. Hülsmann | B. Kravic | M. Weith | Matthias Weith | Hemmo Meyer | B. Kravić | Matthias Weith
[1] Robertson Craig,et al. Open source system for analyzing, validating, and storing protein identification data. , 2004, Journal of proteome research.
[2] R. Paules,et al. An integrated stress response regulates amino acid metabolism and resistance to oxidative stress. , 2003, Molecular cell.
[3] M. Bug,et al. Emerging functions of the VCP/p97 AAA-ATPase in the ubiquitin system , 2012, Nature Cell Biology.
[4] A. Isacchi,et al. Covalent and allosteric inhibitors of the ATPase VCP/p97 induce cancer cell death. , 2013, Nature chemical biology.
[5] Giulio Superti-Furga,et al. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS , 2013, Nature Methods.
[6] D. Ron,et al. Stress‐induced gene expression requires programmed recovery from translational repression , 2003, The EMBO journal.
[7] Brendan MacLean,et al. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine , 2006, Bioinform..
[8] D. Ron,et al. New insights into translational regulation in the endoplasmic reticulum unfolded protein response. , 2012, Cold Spring Harbor perspectives in biology.
[9] A. Buchberger,et al. Cdc48: a power machine in protein degradation. , 2011, Trends in biochemical sciences.
[10] Justin M. Reitsma,et al. Valosin-containing protein (VCP)–Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor * , 2016, Molecular & Cellular Proteomics.
[11] Edward L. Huttlin,et al. Systematic VCP-UBXD Adaptor Network Proteomics Identifies a Role for UBXN10 in Regulating Ciliogenesis , 2016 .
[12] T. Rapoport,et al. Molecular Mechanism of Substrate Processing by the Cdc48 ATPase Complex , 2017, Cell.
[13] Wenzheng Zhang,et al. The p97-UFD1L-NPL4 Protein Complex Mediates Cytokine-Induced IκBα Proteolysis , 2013, Molecular and Cellular Biology.
[14] R. Deshaies,et al. UBXD7 Binds Multiple Ubiquitin Ligases and Implicates p97 in HIF1α Turnover , 2008, Cell.
[15] Johannes Griss,et al. The Proteomics Identifications (PRIDE) database and associated tools: status in 2013 , 2012, Nucleic Acids Res..
[16] D. Ron,et al. Perk is essential for translational regulation and cell survival during the unfolded protein response. , 2000, Molecular cell.
[17] Yong‐jun Liu,et al. RNF185, a Novel Mitochondrial Ubiquitin E3 Ligase, Regulates Autophagy through Interaction with BNIP1 , 2011, PloS one.
[18] Daniel N. Wilson,et al. The structure and function of the eukaryotic ribosome. , 2012, Cold Spring Harbor perspectives in biology.
[19] Michele Pagano,et al. Degradation of Cdc25A by β-TrCP during S phase and in response to DNA damage , 2003, Nature.
[20] Eric W Deutsch,et al. The state of the human proteome in 2012 as viewed through PeptideAtlas. , 2013, Journal of proteome research.
[21] M. MacCoss,et al. Substrate Trapping Proteomics Reveals Targets of the βTrCP2/FBXW11 Ubiquitin Ligase , 2014, Molecular and Cellular Biology.
[22] Jina Yun,et al. MUL1 acts in parallel to the PINK1/parkin pathway in regulating mitofusin and compensates for loss of PINK1/parkin , 2014, eLife.
[23] Ben C. Collins,et al. A tool for the automated, targeted analysis of data-independent acquisition MS-data: OpenSWATH , 2014 .
[24] Lars Malmström,et al. aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data , 2014, Bioinform..
[25] David J. Anderson,et al. Ventromedial hypothalamic neurons control a defensive emotion state , 2015, eLife.
[26] E. El Khouri,et al. RNF185 Is a Novel E3 Ligase of Endoplasmic Reticulum-associated Degradation (ERAD) That Targets Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)* , 2013, The Journal of Biological Chemistry.
[27] Amber L. Couzens,et al. BioID-based Identification of Skp Cullin F-box (SCF)β-TrCP1/2 E3 Ligase Substrates* , 2015, Molecular & Cellular Proteomics.
[28] D. Gerlich,et al. Cdc48/p97–Ufd1–Npl4 antagonizes Aurora B during chromosome segregation in HeLa cells , 2011, Journal of Cell Science.
[29] Ruedi Aebersold,et al. Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis. , 2015, Cell host & microbe.
[30] H. Meyer,et al. The VCP/p97 system at a glance: connecting cellular function to disease pathogenesis , 2014, Journal of Cell Science.
[31] Michael J MacCoss,et al. Statistical control of peptide and protein error rates in large-scale targeted DIA analyses , 2017, Nature Methods.
[32] Jeffrey L. Brodsky,et al. One step at a time: endoplasmic reticulum-associated degradation , 2008, Nature Reviews Molecular Cell Biology.
[33] Junying Yuan,et al. A Selective Inhibitor of eIF2α Dephosphorylation Protects Cells from ER Stress , 2005, Science.
[34] D. Pappin,et al. A complex of mammalian Ufd1 and Npl4 links the AAA‐ATPase, p97, to ubiquitin and nuclear transport pathways , 2000, The EMBO journal.
[35] G. Iliakis,et al. The p97-Ufd1-Npl4 ATPase complex ensures robustness of the G2/M checkpoint by facilitating CDC25A degradation , 2014, Cell cycle.
[36] P. Meraldi,et al. The UBXN-2/p37/p47 adaptors of CDC-48/p97 regulate mitosis by limiting the centrosomal recruitment of Aurora A , 2013, The Journal of cell biology.
[37] S. Shenolikar,et al. Growth Arrest and DNA Damage-Inducible Protein GADD34 Assembles a Novel Signaling Complex Containing Protein Phosphatase 1 and Inhibitor 1 , 2001, Molecular and Cellular Biology.
[38] R. Aebersold,et al. Endolysosomal sorting of ubiquitylated caveolin-1 is regulated by VCP and UBXD1 and impaired by VCP disease mutations , 2011, Nature Cell Biology.
[39] T. Rapoport,et al. JCB Article , 2001 .
[40] E McEwen,et al. Translational control is required for the unfolded protein response and in vivo glucose homeostasis. , 2001, Molecular cell.
[41] Y. Ye,et al. Structure and function of the AAA+ ATPase p97/Cdc48p. , 2016, Gene.
[42] Brett Larsen,et al. Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry , 2016, bioRxiv.
[43] T. Hoppe,et al. Ring of Change: CDC48/p97 Drives Protein Dynamics at Chromatin , 2016, Front. Genet..
[44] J. Eng,et al. Comet: An open‐source MS/MS sequence database search tool , 2013, Proteomics.
[45] M. Peng,et al. A systems-wide screen identifies substrates of the SCFβTrCP ubiquitin ligase , 2014, Science Signaling.
[46] M. Ehrmann,et al. VCP/p97 cooperates with YOD1, UBXD1 and PLAA to drive clearance of ruptured lysosomes by autophagy , 2017, The EMBO journal.
[47] Ludovic C. Gillet,et al. Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis* , 2012, Molecular & Cellular Proteomics.
[48] F. Urano,et al. Transcriptional and translational control in the Mammalian unfolded protein response. , 2002, Annual review of cell and developmental biology.
[49] Kim Schneider,et al. Preventing proteostasis diseases by selective inhibition of a phosphatase regulatory subunit , 2015, Science.
[50] R. Deshaies,et al. Proteotoxic crisis, the ubiquitin-proteasome system, and cancer therapy , 2014, BMC Biology.
[51] Brendan MacLean,et al. Building high-quality assay libraries for targeted analysis of SWATH MS data , 2015, Nature Protocols.
[52] V. Kimonis,et al. VCP disease associated with myopathy, Paget disease of bone and frontotemporal dementia: review of a unique disorder. , 2008, Biochimica et biophysica acta.
[53] Edward L. Huttlin,et al. The BioPlex Network: A Systematic Exploration of the Human Interactome , 2015, Cell.
[54] D. Toczyski,et al. DNA Damage Regulates Translation through β-TRCP Targeting of CReP , 2015, PLoS genetics.
[55] J. Wade Harper,et al. Defining human ERAD networks through an integrative mapping strategy , 2011, Nature Cell Biology.
[56] Devin K. Schweppe,et al. Architecture of the human interactome defines protein communities and disease networks , 2017, Nature.
[57] H. Schindelin,et al. Control of p97 function by cofactor binding , 2015, FEBS letters.
[58] R. Read,et al. G-actin provides substrate-specificity to eukaryotic initiation factor 2α holophosphatases , 2015, eLife.
[59] R. Deshaies,et al. Ubiquitin- and ATP-dependent unfoldase activity of P97/VCP•NPLOC4•UFD1L is enhanced by a mutation that causes multisystem proteinopathy , 2017, Proceedings of the National Academy of Sciences.
[60] Ludovic C. Gillet,et al. Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system , 2013, Nature Methods.
[61] Jennifer L Mamrosh,et al. p97/VCP promotes degradation of CRBN substrate glutamine synthetase and neosubstrates , 2017, Proceedings of the National Academy of Sciences.
[62] N. Sonenberg,et al. Translational control in stress and apoptosis , 2005, Nature Reviews Molecular Cell Biology.
[63] D. Ron,et al. Inhibition of a constitutive translation initiation factor 2α phosphatase, CReP, promotes survival of stressed cells , 2003, The Journal of cell biology.
[64] J. Weissman,et al. Targeting the AAA ATPase p97 as an Approach to Treat Cancer through Disruption of Protein Homeostasis. , 2015, Cancer cell.