Evaluation of different biological data and computational classification methods for use in protein interaction prediction
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Ziv Bar-Joseph | Judith Klein-Seetharaman | Yanjun Qi | J. Klein-Seetharaman | Z. Bar-Joseph | Yanjun Qi
[1] Nicola J. Rinaldi,et al. Computational discovery of gene modules and regulatory networks , 2003, Nature Biotechnology.
[2] Gary D Bader,et al. Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants , 2001, Science.
[3] J. Rothberg,et al. Gaining confidence in high-throughput protein interaction networks , 2004, Nature Biotechnology.
[4] Gary D Bader,et al. Global Mapping of the Yeast Genetic Interaction Network , 2004, Science.
[5] Andreas Wagner,et al. A statistical framework for combining and interpreting proteomic datasets , 2004, Bioinform..
[6] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[7] E. O’Shea,et al. Global analysis of protein localization in budding yeast , 2003, Nature.
[8] Yoshihiro Yamanishi,et al. Protein network inference from multiple genomic data: a supervised approach , 2004, ISMB/ECCB.
[9] E. O’Shea,et al. Global analysis of protein expression in yeast , 2003, Nature.
[10] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[11] Yanjun Qi,et al. Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources , 2004, Pacific Symposium on Biocomputing.
[12] Thorsten Joachims,et al. Learning to classify text using support vector machines - methods, theory and algorithms , 2002, The Kluwer international series in engineering and computer science.
[13] C. Ball,et al. Saccharomyces Genome Database. , 2002, Methods in enzymology.
[14] D. Eisenberg,et al. Computational methods of analysis of protein-protein interactions. , 2003, Current opinion in structural biology.
[15] B. Snel,et al. Comparative assessment of large-scale data sets of protein–protein interactions , 2002, Nature.
[16] Dmitrij Frishman,et al. MIPS: analysis and annotation of proteins from whole genomes in 2005 , 2005, Nucleic Acids Res..
[17] M. Gerstein,et al. A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data , 2003, Science.
[18] Shmuel Sattath,et al. How reliable are experimental protein-protein interaction data? , 2003, Journal of molecular biology.
[19] G. Sumara,et al. A Probabilistic Functional Network of Yeast Genes , 2004 .
[20] J. Ross Quinlan,et al. C4.5: Programs for Machine Learning , 1992 .
[21] Pat Langley,et al. Estimating Continuous Distributions in Bayesian Classifiers , 1995, UAI.
[22] Isabelle Guyon,et al. An Introduction to Variable and Feature Selection , 2003, J. Mach. Learn. Res..
[23] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[24] Frederick P. Roth,et al. Predicting co-complexed protein pairs using genomic and proteomic data integration , 2004, BMC Bioinformatics.
[25] Nicola J. Rinaldi,et al. Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.
[26] Gary D Bader,et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry , 2002, Nature.
[27] R. Ozawa,et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[28] Mark Gerstein,et al. Information assessment on predicting protein-protein interactions , 2004, BMC Bioinformatics.
[29] Gary D Bader,et al. Analyzing yeast protein–protein interaction data obtained from different sources , 2002, Nature Biotechnology.
[30] Leo Breiman,et al. Random Forests , 2001, Machine Learning.
[31] Ioannis Xenarios,et al. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions , 2002, Nucleic Acids Res..
[32] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[33] Ioannis Xenarios,et al. DIP: The Database of Interacting Proteins: 2001 update , 2001, Nucleic Acids Res..