Single-cell genomics for dissection of complex malaria infections
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D. Serre | F. Nosten | T. Anderson | Standwell C. Nkhoma | S. Nair | B. Daniel | Ian H Cheeseman | P. Zimmerman | Karla M. Gorena | Ian H. Cheeseman | Shalini Nair
[1] B. Genton,et al. A molecular marker of artemisinin-resistant Plasmodium falciparum malaria , 2013, Nature.
[2] Kun Zhang,et al. Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells , 2013, Nature Biotechnology.
[3] Ira M. Hall,et al. Mosaic Copy Number Variation in Human Neurons , 2013, Science.
[4] E. Shapiro,et al. Single-cell sequencing-based technologies will revolutionize whole-organism science , 2013, Nature Reviews Genetics.
[5] U. d’Alessandro,et al. 1912-2012: a century of research on Plasmodium vivax in vitro culture. , 2013, Trends in parasitology.
[6] Samuel A. Assefa,et al. A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data , 2013, BMC Genomics.
[7] P. Blainey. The future is now: single-cell genomics of bacteria and archaea. , 2013, FEMS microbiology reviews.
[8] Yves Moreau,et al. Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains , 2013, Nucleic acids research.
[9] Christian R Marshall,et al. Sequencing of isolated sperm cells for direct haplotyping of a human genome , 2013, Genome research.
[10] Jie Qiao,et al. Probing Meiotic Recombination and Aneuploidy of Single Sperm Cells by Whole-Genome Sequencing , 2012, Science.
[11] X. Xie,et al. Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell , 2012, Science.
[12] M. Leippe,et al. Isolation of erythrocytes infected with viable early stages of Plasmodium falciparum by flow cytometry , 2012, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[13] Brian L Browning,et al. Identity by descent between distant relatives: detection and applications. , 2012, Annual review of genetics.
[14] D. Serre,et al. Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax , 2012, PLoS neglected tropical diseases.
[15] Stephen R. Quake,et al. Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm , 2012, Cell.
[16] John C. Tan,et al. Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing , 2012, Nature.
[17] F. Nosten,et al. Emergence of artemisinin-resistant malaria on the western border of Thailand: a longitudinal study , 2012, The Lancet.
[18] L. Lachaud,et al. Isolation of Plasmodium falciparum by flow-cytometry: implications for single-trophozoite genotyping and parasite DNA purification for whole-genome high-throughput sequencing of archival samples , 2012, Malaria Journal.
[19] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..
[20] P. Newton,et al. A Major Genome Region Underlying Artemisinin Resistance in Malaria , 2012, Science.
[21] F. Nosten,et al. Close kinship within multiple-genotype malaria parasite infections , 2012, Proceedings of the Royal Society B: Biological Sciences.
[22] Robert K. Colwell,et al. Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages , 2012 .
[23] Alexander Gusev,et al. The architecture of long-range haplotypes shared within and across populations. , 2012, Molecular biology and evolution.
[24] A. Barry,et al. Understanding the population genetics of Plasmodium vivax is essential for malaria control and elimination , 2012, Malaria Journal.
[25] D. Kwiatkowski,et al. Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes , 2012, BMC Genomics.
[26] Michael A Quail,et al. Optimal enzymes for amplifying sequencing libraries , 2011, Nature Methods.
[27] S. Huijben,et al. The fitness of drug‐resistant malaria parasites in a rodent model: multiplicity of infection , 2011, Journal of evolutionary biology.
[28] J. Troge,et al. Tumour evolution inferred by single-cell sequencing , 2011, Nature.
[29] Vivek Gopalan,et al. High recombination rates and hotspots in a Plasmodium falciparum genetic cross , 2011, Genome Biology.
[30] D. Conway,et al. Plasmodium knowlesi: Reservoir Hosts and Tracking the Emergence in Humans and Macaques , 2011, PLoS pathogens.
[31] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[32] Jinchuan Xing,et al. Maximum-likelihood estimation of recent shared ancestry (ERSA). , 2011, Genome research.
[33] Andrew Read,et al. Exposing malaria in-host diversity and estimating population diversity by capture-recapture using massively parallel pyrosequencing , 2010, Proceedings of the National Academy of Sciences.
[34] Patrick Durand,et al. African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum , 2010, Proceedings of the National Academy of Sciences.
[35] M. Ferdig,et al. Gene copy number and malaria biology. , 2009, Trends in parasitology.
[36] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[37] B. Browning,et al. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. , 2009, American journal of human genetics.
[38] Jonathan Crabtree,et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax , 2008, Nature.
[39] M. Ferdig,et al. Quantitative dissection of clone-specific growth rates in cultured malaria parasites. , 2007, International journal for parasitology.
[40] Mark B Gerstein,et al. Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing , 2006, BMC Genomics.
[41] D. Sim,et al. WITHIN‐HOST COMPETITION IN GENETICALLY DIVERSE MALARIA INFECTIONS: PARASITE VIRULENCE AND COMPETITIVE SUCCESS , 2006, Evolution; international journal of organic evolution.
[42] I. Hastings,et al. Complex dynamics and stability of resistance to antimalarial drugs , 2006, Parasitology.
[43] A. Read,et al. Dynamics of Multiple Infection and Within‐Host Competition in Genetically Diverse Malaria Infections , 2005, The American Naturalist.
[44] Jonathan E. Allen,et al. Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.
[45] J. T. Williams,et al. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. , 2000, Molecular biology and evolution.
[46] D. Conway,et al. High recombination rate in natural populations of Plasmodium falciparum. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[47] Georgia Lahr,et al. Identification of expressed genes by laser-mediated manipulation of single cells , 1998, Nature Biotechnology.
[48] Steven A. Frank,et al. Models of Parasite Virulence , 1996, The Quarterly Review of Biology.
[49] W. G. Hill,et al. Estimation of numbers of malaria clones in blood samples , 1995, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[50] V. Rosário. Cloning of naturally occurring mixed infections of malaria parasites. , 1981, Science.
[51] W. Trager,et al. Human malaria parasites in continuous culture. , 1976, Science.
[52] J. Itani. African Great Apes , 1974 .
[53] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[54] Kevin A. Pelphrey,et al. Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell , 2012 .
[55] D. Arnot,et al. The progression of the intra-erythrocytic cell cycle of Plasmodium falciparum and the role of the centriolar plaques in asynchronous mitotic division during schizogony. , 2011, International journal for parasitology.
[56] L. Cui,et al. Rapid isolation of single malaria parasite–infected red blood cells by cell sorting , 2011, Nature Protocols.
[57] Alexander Gusev,et al. Whole population, genome-wide mapping of hidden relatedness. , 2009, Genome research.
[58] Pardis C Sabeti,et al. A genome-wide map of diversity in Plasmodium falciparum , 2007, Nature Genetics.