Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus
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Colin J. Worby | Stephen D. Bentley | Marc Lipsitch | Susan S. Huang | William P. Hanage | Tjibbe Donker | Hsiao-Han Chang | Edward J. Feil | M. Lipsitch | W. Hanage | S. Bentley | C. Worby | E. Feil | Hsiao-Han Chang | T. Donker | Janina Dordel | Janina Dordel | Susan S. Huang | J. Dordel
[1] Margaret A Dudeck,et al. Antimicrobial-Resistant Pathogens Associated With Healthcare-Associated Infections: Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2011–2014 , 2016, Infection Control & Hospital Epidemiology.
[2] E. Perencevich,et al. USA300 Methicillin-Resistant Staphylococcus aureus, United States, 2000–2013 , 2015, Emerging infectious diseases.
[3] Julian Parkhill,et al. Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission , 2015, Nature Communications.
[4] Loren G. Miller,et al. Transmission and Microevolution of USA300 MRSA in U.S. Households: Evidence from Whole-Genome Sequencing , 2015, mBio.
[5] Trevor Bedford,et al. Eight challenges in phylodynamic inference , 2015, Epidemics.
[6] N. Loman,et al. A complete bacterial genome assembled de novo using only nanopore sequencing data , 2015, Nature Methods.
[7] Jacqueline A. Keane,et al. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins , 2014, Nucleic acids research.
[8] Randall J. Olsen,et al. Absence of Patient-to-Patient Intrahospital Transmission of Staphylococcus aureus as Determined by Whole-Genome Sequencing , 2014, mBio.
[9] Julian Parkhill,et al. Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community , 2014, Proceedings of the National Academy of Sciences.
[10] Colin J. Worby,et al. Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data , 2014, PLoS Comput. Biol..
[11] Daniel J. Wilson,et al. Whole-Genome Sequencing Shows That Patient-to-Patient Transmission Rarely Accounts for Acquisition of Staphylococcus aureus in an Intensive Care Unit , 2013, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[12] J. Mossong,et al. Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries , 2013, BMC Infectious Diseases.
[13] B. Spratt,et al. Predictors of Hospitals with Endemic Community-Associated Methicillin-Resistant Staphylococcus aureus , 2013, Infection Control & Hospital Epidemiology.
[14] Nazle M. Veras,et al. Molecular Epidemiology of Community-Associated Methicillin-resistant Staphylococcus aureus in the genomic era: a Cross-Sectional Study , 2013, Scientific Reports.
[15] Richard G. Everitt,et al. Within-Host Evolution of Staphylococcus aureus during Asymptomatic Carriage , 2013, PloS one.
[16] B. Spratt,et al. Diversity of Methicillin-Resistant Staphylococcus aureus (MRSA) Strains Isolated from Inpatients of 30 Hospitals in Orange County, California , 2013, PloS one.
[17] Arjun Srinivasan,et al. Antimicrobial-Resistant Pathogens Associated with Healthcare-Associated Infections Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009–2010 , 2013, Infection Control & Hospital Epidemiology.
[18] Shawn T. Brown,et al. Simulation shows hospitals that cooperate on infection control obtain better results than hospitals acting alone. , 2012, Health affairs.
[19] J. Wallinga,et al. Hospital Networks and the Dispersal of Hospital-Acquired Pathogens by Patient Transfer , 2012, PloS one.
[20] Susan S. Huang,et al. Patient sharing and population genetic structure of methicillin-resistant Staphylococcus aureus , 2012, Proceedings of the National Academy of Sciences.
[21] Peter Donnelly,et al. Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease , 2012, Proceedings of the National Academy of Sciences.
[22] M. Suchard,et al. Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.
[23] N. Fishman,et al. Healthcare Infection Control Practices Advisory Committee , 2012 .
[24] N. York,et al. Active Bacterial Core Surveillance (ABCs) Report Emerging Infections Program Network Methicillin-Resistant Staphylococcus aureus, 2013 , 2015 .
[25] B. Spratt,et al. Differences in Methicillin-Resistant Staphylococcus aureus Strains Isolated from Pediatric and Adult Patients from Hospitals in a Large County in California , 2011, Journal of Clinical Microbiology.
[26] U. Nübel,et al. From types to trees: reconstructing the spatial spread of Staphylococcus aureus based on DNA variation. , 2011, International journal of medical microbiology : IJMM.
[27] Shawn T. Brown,et al. Modeling the Spread of Methicillin-Resistant Staphylococcus aureus (MRSA) Outbreaks throughout the Hospitals in Orange County, California , 2011, Infection Control & Hospital Epidemiology.
[28] Peer Bork,et al. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy , 2011, Nucleic Acids Res..
[29] L. Miller,et al. Serious infections caused by methicillin-resistant Staphylococcus aureus. , 2010, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[30] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[31] Peter Beerli,et al. Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations , 2010, Genetics.
[32] Jacco Wallinga,et al. Patient Referral Patterns and the Spread of Hospital-Acquired Infections through National Health Care Networks , 2010, PLoS Comput. Biol..
[33] Julian Parkhill,et al. Evolution of MRSA During Hospital Transmission and Intercontinental Spread , 2010, Science.
[34] B. Spratt,et al. Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis , 2010, PLoS medicine.
[35] C. Naber. Staphylococcus aureus bacteremia: epidemiology, pathophysiology, and management strategies. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[36] J. Beaumont,et al. Duration of colonization with methicillin-resistant Staphylococcus aureus. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[37] X. Didelot,et al. A comparison of homologous recombination rates in bacteria and archaea , 2009, The ISME Journal.
[38] B. Cookson,et al. Utility of spa typing for investigating the local epidemiology of MRSA on a UK intensive care ward. , 2009, The Journal of hospital infection.
[39] M. Jackson,et al. 2007 Guideline for Isolation Precautions: Preventing Transmission of Infectious Agents in Health Care Settings , 2007, American Journal of Infection Control.
[40] David L. Smith,et al. Hospitalizations and Deaths Caused by Methicillin-Resistant Staphylococcus aureus, United States, 1999–2005 , 2007, Emerging infectious diseases.
[41] Alex van Belkum,et al. Evaluation of Molecular Typing Methods in Characterizing a European Collection of Epidemic Methicillin-Resistant Staphylococcus aureus Strains: the HARMONY Collection , 2007, Journal of Clinical Microbiology.
[42] D. Cardo,et al. Estimating Health Care-Associated Infections and Deaths in U.S. Hospitals, 2002 , 2007, Public health reports.
[43] Motoo Kimura,et al. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population*. , 1973, Genetical research.
[44] J. Siegel,et al. HEALTH CARE INFECTION CONTROL PRACTICES ADVISORY COMMITTEE. 2007 GUIDELINE FOR ISOLATION PRECAUTIONS: PREVENTING TRANSMISSION OF INFECTIOUS AGENTS IN HEALTH CARE SETTINGS , 2007 .
[45] M. Jackson,et al. Guideline for isolation precautions: preventing transmission of infectious agents in healthcare settings 2007. , 2007 .
[46] M. Hallin,et al. Validation of Pulsed-Field Gel Electrophoresis and spa Typing for Long-Term, Nationwide Epidemiological Surveillance Studies of Staphylococcus aureus Infections , 2006, Journal of Clinical Microbiology.
[47] J. Marschall,et al. Duration of Methicillin-Resistant Staphylococcus aureus Carriage, According to Risk Factors for Acquisition , 2006, Infection Control & Hospital Epidemiology.
[48] Eduardo P C Rocha,et al. Comparisons of dN/dS are time dependent for closely related bacterial genomes. , 2006, Journal of theoretical biology.
[49] J. Goudet. HIERFSTAT , a package for R to compute and test hierarchical F -statistics , 2005 .
[50] Thomas Ludwig,et al. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees , 2005, Bioinform..
[51] Pavel A. Pevzner,et al. De novo identification of repeat families in large genomes , 2005, ISMB.
[52] R. Nielsen,et al. Linkage Disequilibrium as a Signature of Selective Sweeps , 2004, Genetics.
[53] James M. Musser,et al. spa Typing Method for Discriminating among Staphylococcus aureus Isolates: Implications for Use of a Single Marker To Detect Genetic Micro- and Macrovariation , 2004, Journal of Clinical Microbiology.
[54] O. Pybus,et al. Unifying the Epidemiological and Evolutionary Dynamics of Pathogens , 2004, Science.
[55] J. Rothgänger,et al. Typing of Methicillin-Resistant Staphylococcus aureus in a University Hospital Setting by Using Novel Software for spa Repeat Determination and Database Management , 2003, Journal of Clinical Microbiology.
[56] J. Jernigan,et al. Prevalence of and Risk Factors for Colonization With Methicillin-Resistant Staphylococcus aureus at the Time of Hospital Admission , 2003, Infection Control & Hospital Epidemiology.
[57] B. Spratt,et al. How Clonal Is Staphylococcus aureus? , 2003, Journal of bacteriology.
[58] E. Nevo,et al. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review , 2002, Molecular ecology.
[59] Richard R. Hudson,et al. Generating samples under a Wright-Fisher neutral model of genetic variation , 2002, Bioinform..
[60] Peter Beerli,et al. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[61] J. Hein,et al. Consequences of recombination on traditional phylogenetic analysis. , 2000, Genetics.
[62] B. Kreiswirth,et al. Evaluation of Protein A Gene Polymorphic Region DNA Sequencing for Typing of Staphylococcus aureus Strains , 1999, Journal of Clinical Microbiology.
[63] A. van Belkum,et al. Nasal carriage of Staphylococcus aureus: epidemiology, underlying mechanisms, and associated risks , 1997, Clinical microbiology reviews.
[64] M. Slatkin,et al. Estimation of levels of gene flow from DNA sequence data. , 1992, Genetics.
[65] M. Slatkin,et al. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. , 1991, Genetics.
[66] B. Weir,et al. ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.
[67] R. Wenzel,et al. Epidemiology of nosocomial infections caused by methicillin-resistant Staphylococcus aureus. , 1982, Annals of internal medicine.
[68] S WRIGHT,et al. Genetical Structure of Populations , 1950, British medical journal.
[69] S. Wright. Evolution in mendelian populations , 1931 .