Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes
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Kris Popendorf | Yasunori Osana | Yasubumi Sakakibara | Y. Sakakibara | Yasunori Osana | Kris Popendorf | Hachiya Tsuyoshi | Hachiya Tsuyoshi
[1] D. Haussler,et al. Ultraconserved Elements in the Human Genome , 2004, Science.
[2] Philip Lijnzaad,et al. The Ensembl genome database project , 2002, Nucleic Acids Res..
[3] S. Salzberg,et al. Alignment of whole genomes. , 1999, Nucleic acids research.
[4] D. Haussler,et al. Aligning multiple genomic sequences with the threaded blockset aligner. , 2004, Genome research.
[5] Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome , 2002, Nature.
[6] B. Birren,et al. Dynamics of Pseudomonas aeruginosa genome evolution , 2008, Proceedings of the National Academy of Sciences.
[7] Bin Ma,et al. PatternHunter: faster and more sensitive homology search , 2002, Bioinform..
[8] Ronald L. Rivest,et al. The MD5 Message-Digest Algorithm , 1992, RFC.
[9] I-Min A. Chen,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[10] Daniel J. Blankenberg,et al. 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. , 2007, Genome research.
[11] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[12] Colin N. Dewey,et al. Initial sequencing and comparative analysis of the mouse genome. , 2002 .
[13] Nikos Kyrpides,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[14] Benoist,et al. On the Entropy of DNA: Algorithms and Measurements based on Memory and Rapid Convergence , 1994 .
[15] D. Haussler,et al. Human-mouse alignments with BLASTZ. , 2003, Genome research.
[16] Ioan Tabus,et al. Genome compression using normalized maximum likelihood models for constrained Markov sources , 2008, 2008 IEEE Information Theory Workshop.
[17] L. Kish. End of Moore's law: thermal (noise) death of integration in micro and nano electronics , 2002 .
[18] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[19] Cédric Notredame,et al. Upcoming challenges for multiple sequence alignment methods in the high-throughput era , 2009, Bioinform..
[20] 尚弘 島影. National Institute of Standards and Technologyにおける超伝導研究及び生活 , 2001 .
[21] P. Pevzner,et al. Genome rearrangements in mammalian evolution: lessons from human and mouse genomes. , 2003, Genome research.
[22] Sean Quinlan,et al. Venti: A New Approach to Archival Storage , 2002, FAST.
[23] F. Blattner,et al. Mauve: multiple alignment of conserved genomic sequence with rearrangements. , 2004, Genome research.
[24] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[25] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[26] Chuong B. Do,et al. Access the most recent version at doi: 10.1101/gr.926603 References , 2003 .
[27] Nancy F. Hansen,et al. Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.
[28] Lior Pachter,et al. Parametric Alignment of Drosophila Genomes , 2005, PLoS Comput. Biol..
[29] Franco P. Preparata,et al. Quick, Practical Selection of Effective Seeds for Homology Search , 2005, J. Comput. Biol..
[30] Enno Ohlebusch,et al. Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences , 2008, J. Comput. Biol..
[31] P. Pevzner,et al. Genome-scale evolution: reconstructing gene orders in the ancestral species. , 2002, Genome research.
[32] Bruce T. Lahn,et al. SPEED: a molecular-evolution-based database of mammalian orthologous groups , 2006, Bioinform..
[33] Kris Popendorf,et al. Accurate identification of orthologous segments among multiple genomes , 2009, Bioinform..
[34] Lisa M. D'Souza,et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution , 2004, Nature.