BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs
暂无分享,去创建一个
Yves Van de Peer | Mahdi Heydari | Jan Fostier | Giles Miclotte | Y. Peer | J. Fostier | Mahdi Heydari | Giles Miclotte
[1] Pierre Peterlongo,et al. Read mapping on de Bruijn graphs , 2015, BMC Bioinformatics.
[2] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[3] Leping Li,et al. ART: a next-generation sequencing read simulator , 2012, Bioinform..
[4] R. Burnap. Systems and Photosystems: Cellular Limits of Autotrophic Productivity in Cyanobacteria , 2014, Front. Bioeng. Biotechnol..
[5] Heng Li,et al. A survey of sequence alignment algorithms for next-generation sequencing , 2010, Briefings Bioinform..
[6] Bernard De Baets,et al. essaMEM: finding maximal exact matches using enhanced sparse suffix arrays , 2013, Bioinform..
[7] Pierre Peterlongo,et al. Read Mapping on de Bruijn graph , 2015, ArXiv.
[8] Tak Kuen Siu,et al. Markov Chains: Models, Algorithms and Applications , 2006 .
[9] Paul Medvedev,et al. Compacting de Bruijn graphs from sequencing data quickly and in low memory , 2016, Bioinform..
[10] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[11] Pavel A Pevzner,et al. How to apply de Bruijn graphs to genome assembly. , 2011, Nature biotechnology.
[12] Arend Hintze,et al. Scaling metagenome sequence assembly with probabilistic de Bruijn graphs , 2011, Proceedings of the National Academy of Sciences.
[13] Alla Lapidus,et al. ExSPAnder: a universal repeat resolver for DNA fragment assembly , 2014, Bioinform..
[14] Matthew C. LaFave,et al. sam2pairwise version 1.0.0 , 2014 .
[15] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[16] Christus,et al. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins , 2022 .
[17] Juliane C. Dohm,et al. Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems , 2011, Genome Biology.
[18] Peter Haider,et al. Predicting Sentences using N-Gram Language Models , 2005, HLT.
[19] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[20] A. Magi,et al. Detection of Genomic Structural Variants from Next-Generation Sequencing Data , 2015, Front. Bioeng. Biotechnol..
[21] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[22] Yadong Wang,et al. deBGA: read alignment with de Bruijn graph-based seed and extension , 2016, Bioinform..