Long Noncoding RNAs: Past, Present, and Future
暂无分享,去创建一个
[1] S. Safe,et al. HOTAIR IS A NEGATIVE PROGNOSTIC FACTOR AND EXHIBITS PRO-ONCOGENIC ACTIVITY IN PANCREATIC CANCER , 2012, Oncogene.
[2] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[3] Nadav S. Bar,et al. Landscape of transcription in human cells , 2012, Nature.
[4] Kotb Abdelmohsen,et al. LincRNA-p21 suppresses target mRNA translation. , 2012, Molecular cell.
[5] W. Harris,et al. Metabolic differentiation in the embryonic retina , 2012, Nature Cell Biology.
[6] Shinichi Nakagawa,et al. Malat1 is not an essential component of nuclear speckles in mice. , 2012, RNA.
[7] P. Schirmacher,et al. Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development , 2012, RNA biology.
[8] Chaolin Zhang,et al. The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. , 2012, Cell reports.
[9] ENCODEConsortium,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[10] M. Esteller,et al. Intronic RNAs mediate EZH2 regulation of epigenetic targets , 2012, Nature Structural &Molecular Biology.
[11] Sven Diederichs,et al. The hallmarks of cancer , 2012, RNA biology.
[12] César A. Hidalgo,et al. Proto-genes and de novo gene birth , 2012, Nature.
[13] M. Kyba,et al. The H19 lincRNA is a developmental reservoir of miR-675 which suppresses growth and Igf1r , 2012, Nature Cell Biology.
[14] J. Mattick,et al. Genome-wide analysis of long noncoding RNA stability , 2012, Genome research.
[15] Saba Valadkhan,et al. Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs. , 2012, RNA.
[16] M. Hottiger,et al. Inheritance of silent rDNA chromatin is mediated by PARP1 via noncoding RNA. , 2012, Molecular cell.
[17] M. Toyota,et al. Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors. , 2012, Cancer research.
[18] Rory Johnson,et al. Human long non‐coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors , 2012, The EMBO journal.
[19] Cole Trapnell,et al. Targeted RNA sequencing reveals the deep complexity of the human transcriptome , 2011, Nature Biotechnology.
[20] D. Bartel,et al. Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution , 2011, Cell.
[21] Brad A Chapman,et al. The genomic binding sites of a noncoding RNA , 2011, Proceedings of the National Academy of Sciences.
[22] Jeannie T. Lee. Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control , 2011, Nature Reviews Molecular Cell Biology.
[23] Giacomo Cavalli,et al. Trithorax group proteins: switching genes on and keeping them active , 2011, Nature Reviews Molecular Cell Biology.
[24] M. Batzer,et al. Repetitive Elements May Comprise Over Two-Thirds of the Human Genome , 2011, PLoS genetics.
[25] Howard Y. Chang,et al. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. , 2011, Molecular cell.
[26] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[27] Pieter C. Dorrestein,et al. ncRNA- and Pc2 Methylation-Dependent Gene Relocation between Nuclear Structures Mediates Gene Activation Programs , 2011, Cell.
[28] Wei Lu,et al. The kinase LRRK2 is a regulator of the transcription factor NFAT that modulates the severity of inflammatory bowel disease , 2011, Nature Immunology.
[29] S. Miyano,et al. Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. , 2011, Cancer research.
[30] D. Cacchiarelli,et al. A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA , 2011, Cell.
[31] P. Avner,et al. The coupling of X-chromosome inactivation to pluripotency. , 2011, Annual review of cell and developmental biology.
[32] C. Senner,et al. Pluripotency factor binding and Tsix expression act synergistically to repress Xist in undifferentiated embryonic stem cells , 2011, Epigenetics & Chromatin.
[33] Eugene Bolotin,et al. The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. , 2011, Molecular cell.
[34] Cole Trapnell,et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. , 2011, Genes & development.
[35] D. Tautz,et al. The evolutionary origin of orphan genes , 2011, Nature Reviews Genetics.
[36] P. Pandolfi,et al. A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? , 2011, Cell.
[37] Bin Zhang,et al. Biogenesis and function of nuclear bodies. , 2011, Trends in genetics : TIG.
[38] John T. Wei,et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression , 2011, Nature Biotechnology.
[39] M. Marra,et al. Extensive relationship between antisense transcription and alternative splicing in the human genome. , 2011, Genome research.
[40] J. Rinn,et al. lincRNAs act in the circuitry controlling pluripotency and differentiation , 2011, Nature.
[41] Jeannie T. Lee,et al. YY1 Tethers Xist RNA to the Inactive X Nucleation Center , 2011, Cell.
[42] Timothy R. Hughes,et al. Response to “The Reality of Pervasive Transcription” , 2011, PLoS Biology.
[43] Sonia Sharma,et al. Dephosphorylation of the nuclear factor of activated T cells (NFAT) transcription factor is regulated by an RNA-protein scaffold complex , 2011, Proceedings of the National Academy of Sciences.
[44] Cole Trapnell,et al. Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) , 2011, Proceedings of the National Academy of Sciences.
[45] Howard Y. Chang,et al. Extensive and coordinated transcription of noncoding RNAs within cell cycle promoters , 2011, Nature Genetics.
[46] E. Blackburn,et al. Telomerase: an RNP enzyme synthesizes DNA. , 2011, Cold Spring Harbor perspectives in biology.
[47] E. Punch,et al. Pseudogenes: pseudo-functional or key regulators in health and disease? , 2011, RNA.
[48] M. Furuno,et al. Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1 , 2011, Genes to cells : devoted to molecular & cellular mechanisms.
[49] E. Dennis,et al. Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants , 2011, RNA biology.
[50] Patrick Schorderet,et al. Structural and Functional Differences in the Long Non-Coding RNA Hotair in Mouse and Human , 2011, PLoS genetics.
[51] M. Kitagawa,et al. Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15INK4B tumor suppressor gene , 2011, Oncogene.
[52] Howard Y. Chang,et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression , 2011, Nature.
[53] S. Nakagawa,et al. Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice , 2011, The Journal of cell biology.
[54] A. Aravin,et al. PIWI-interacting small RNAs: the vanguard of genome defence , 2011, Nature Reviews Molecular Cell Biology.
[55] C. Glass,et al. Reprogramming Transcription via Distinct Classes of Enhancers Functionally Defined by eRNA , 2011, Nature.
[56] S. Freier,et al. Control of RNA processing by a large non‐coding RNA over‐expressed in carcinomas , 2011, FEBS letters.
[57] Haiyang Xie,et al. Overexpression of Long Non-coding RNA HOTAIR Predicts Tumor Recurrence in Hepatocellular Carcinoma Patients Following Liver Transplantation , 2011, Annals of Surgical Oncology.
[58] Sibum Sung,et al. Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA , 2011, Science.
[59] D. Spector,et al. Direct Visualization of the Co-transcriptional Assembly of a Nuclear Body by Noncoding RNAs , 2010, Nature Cell Biology.
[60] L. Maquat,et al. lncRNAs transactivate Staufen1-mediated mRNA decay by duplexing with 3'UTRs via Alu elements , 2010, Nature.
[61] Samuel S. Shepard,et al. Critical association of ncRNA with introns , 2010, Nucleic acids research.
[62] Florent Hubé,et al. Steroid receptor RNA activator protein binds to and counteracts SRA RNA-mediated activation of MyoD and muscle differentiation , 2010, Nucleic Acids Res..
[63] G. Hannon,et al. Small RNA sorting: matchmaking for Argonautes , 2011, Nature Reviews Genetics.
[64] Justin A. Pruneski,et al. Intergenic transcription causes repression by directing nucleosome assembly. , 2011, Genes & development.
[65] A. Dean. In the loop: long range chromatin interactions and gene regulation. , 2011, Briefings in functional genomics.
[66] Toshiro K. Ohsumi,et al. Genome-wide identification of polycomb-associated RNAs by RIP-seq. , 2010, Molecular cell.
[67] P. Sorensen,et al. The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA , 2010, BMC Biology.
[68] Randeep Rakwal,et al. MALAT‐1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility‐related genes , 2010, FEBS letters.
[69] Nicola Festuccia,et al. Molecular coupling of Tsix regulation and pluripotency , 2010, Nature.
[70] D. Haussler,et al. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing , 2010, Nature Methods.
[71] K. Morris,et al. Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5 , 2010, Transcription.
[72] Jeannie T. Lee,et al. The Long Noncoding RNA, Jpx, Is a Molecular Switch for X Chromosome Inactivation , 2010, Cell.
[73] I. Grummt,et al. Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes. , 2010, Genes & development.
[74] C. Ponting,et al. Transcribed dark matter: meaning or myth? , 2010, Human molecular genetics.
[75] Steven L Salzberg,et al. Between a chicken and a grape: estimating the number of human genes , 2010, Genome Biology.
[76] T. Derrien,et al. Long Noncoding RNAs with Enhancer-like Function in Human Cells , 2010, Cell.
[77] B. Blencowe,et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. , 2010, Molecular cell.
[78] Michael Q. Zhang,et al. A long nuclear‐retained non‐coding RNA regulates synaptogenesis by modulating gene expression , 2010, EMBO Journal.
[79] J. Lingner,et al. TERRA biogenesis, turnover and implications for function , 2010, FEBS letters.
[80] Howard Y. Chang,et al. Genome-wide measurement of RNA secondary structure in yeast , 2010, Nature.
[81] Howard Y. Chang,et al. Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes , 2010, Science.
[82] C. Kanduri,et al. Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1 , 2010, Development.
[83] J. Rinn,et al. A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response , 2010, Cell.
[84] S Kobayashi,et al. Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis , 2010, Science.
[85] M. Fussenegger,et al. The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats , 2010, The EMBO journal.
[86] Eugene V. Koonin,et al. Constraints and plasticity in genome and molecular-phenome evolution , 2010, Nature Reviews Genetics.
[87] P. Pandolfi,et al. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology , 2010, Nature.
[88] S. Raguz,et al. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. , 2010, Molecular cell.
[89] K. Weeks. Advances in RNA structure analysis by chemical probing. , 2010, Current opinion in structural biology.
[90] A. Gabory,et al. The H19 locus: Role of an imprinted non‐coding RNA in growth and development , 2010, BioEssays : news and reviews in molecular, cellular and developmental biology.
[91] Richard A Young,et al. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. , 2010, Molecular cell.
[92] M. Nalls,et al. Evidence for natural antisense transcript-mediated inhibition of microRNA function , 2010, Genome Biology.
[93] Steven L Salzberg,et al. Between a chicken and a grape: estimating the number of human genes , 2010, Genome Biology.
[94] T. Hughes,et al. Most “Dark Matter” Transcripts Are Associated With Known Genes , 2010, PLoS biology.
[95] Jiayi Wang,et al. CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer , 2010, Nucleic acids research.
[96] G. Kreiman,et al. Widespread transcription at neuronal activity-regulated enhancers , 2010, Nature.
[97] Howard Y. Chang,et al. Long noncoding RNA HOTAIR reprograms chromatin state to promote cancer metastasis , 2010, Nature.
[98] Julie A. Law,et al. Establishing, maintaining and modifying DNA methylation patterns in plants and animals , 2010, Nature Reviews Genetics.
[99] G. Chrousos,et al. Noncoding RNA Gas5 Is a Growth Arrest– and Starvation-Associated Repressor of the Glucocorticoid Receptor , 2010, Science Signaling.
[100] P. Robson,et al. Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells. , 2010, RNA.
[101] M. Gerstein,et al. Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays , 2010, BMC Genomics.
[102] Danny Reinberg,et al. Histones: annotating chromatin. , 2009, Annual review of genetics.
[103] L. Mirny,et al. Different gene regulation strategies revealed by analysis of binding motifs. , 2009, Trends in genetics : TIG.
[104] C. Wahlestedt,et al. Regulatory roles of natural antisense transcripts , 2009, Nature Reviews Molecular Cell Biology.
[105] G. Carmichael,et al. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. , 2009, Molecular cell.
[106] Jeannie T. Lee. Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. , 2009, Genes & development.
[107] M. Laan,et al. Natural antisense transcript of natriuretic peptide precursor A (NPPA): structural organization and modulation of NPPA expression , 2009, BMC Molecular Biology.
[108] J. Disterhoft,et al. Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry. , 2009, Nature neuroscience.
[109] J. Rinn,et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression , 2009, Proceedings of the National Academy of Sciences.
[110] Jeannie T. Lee,et al. The pluripotency factor, Oct4, interacts with Ctcf and also controls X-chromosome pairing and counting , 2009, Nature.
[111] Zuo Zhang,et al. Gene regulation by sense-antisense overlap of polyadenylation signals. , 2009, RNA.
[112] L. Selth,et al. RNA immunoprecipitation to determine RNA-protein associations in vivo. , 2009, Cold Spring Harbor protocols.
[113] Hervé Seitz,et al. Redefining MicroRNA Targets , 2009, Current Biology.
[114] M. Kuroda,et al. Drosophila dosage compensation: a complex voyage to the X chromosome , 2009, Development.
[115] J. Goodrich,et al. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes , 2009, Proceedings of the National Academy of Sciences.
[116] Sergio Verjovski-Almeida,et al. Long intronic noncoding RNA transcription: expression noise or expression choice? , 2009, Genomics.
[117] John N. Hutchinson,et al. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. , 2009, Molecular cell.
[118] Can Alkan,et al. Death and Resurrection of the Human IRGM Gene , 2009, PLoS genetics.
[119] T. Mituyama,et al. MENε/β noncoding RNAs are essential for structural integrity of nuclear paraspeckles , 2009, Proceedings of the National Academy of Sciences.
[120] S. Grewal,et al. Transcriptional Scaffolds for Heterochromatin Assembly , 2009, Cell.
[121] V. Kim,et al. Biogenesis of small RNAs in animals , 2009, Nature Reviews Molecular Cell Biology.
[122] Michael F. Lin,et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.
[123] D. Moazed. Small RNAs in transcriptional gene silencing and genome defence , 2009, Nature.
[124] Paulo P. Amaral,et al. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. , 2009, Genome research.
[125] K. Kinzler,et al. The Antisense Transcriptomes of Human Cells , 2008, Science.
[126] Mikkel H. Schierup,et al. RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters , 2008, Science.
[127] Leighton J. Core,et al. Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters , 2008, Science.
[128] S. Buratowski,et al. Gene Expression--Where to Start? , 2008, Science.
[129] Gene W. Yeo,et al. Divergent Transcription from Active Promoters , 2008, Science.
[130] Jennifer A. Mitchell,et al. The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin , 2008, Science.
[131] R. Assoian,et al. Transcriptional regulation of the cyclin D1 gene at a glance , 2008, Journal of Cell Science.
[132] T. Shibata,et al. Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs , 2008, Nature.
[133] Jeannie T. Lee,et al. Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome , 2008, Science.
[134] J. Komorowski,et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. , 2008, Molecular cell.
[135] C. Bonifer,et al. The LPS-Induced Transcriptional Upregulation of the Chicken Lysozyme Locus Involves CTCF Eviction and Noncoding RNA Transcription , 2008, Molecular cell.
[136] I. Grummt,et al. The epigenetics of rRNA genes: from molecular to chromosome biology. , 2008, Annual review of cell and developmental biology.
[137] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[138] Ian Chambers,et al. Molecular Coupling of Xist Regulation and Pluripotency , 2008, Science.
[139] Miki Ebisuya,et al. Ripples from neighbouring transcription , 2008, Nature Cell Biology.
[140] Eric C. Lai,et al. Endogenous small interfering RNAs in animals , 2008, Nature Reviews Molecular Cell Biology.
[141] Marcel H. Schulz,et al. A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome , 2008, Science.
[142] I. Grummt,et al. The structure of NoRC‐associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus , 2008, EMBO reports.
[143] F. Rosenbauer,et al. PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element. , 2008, Genes & development.
[144] T. Morgan,et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase , 2008, Nature Medicine.
[145] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[146] N. Brockdorff,et al. A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements , 2008, PloS one.
[147] Jeannie T. Lee,et al. Intersection of the RNA Interference and X-Inactivation Pathways , 2008, Science.
[148] A. Ferguson-Smith,et al. Genomic imprinting at the mammalian Dlk1-Dio3 domain. , 2008, Trends in genetics : TIG.
[149] C. Glass,et al. Induced ncRNAs Allosterically Modify RNA Binding Proteins in cis to Inhibit Transcription , 2008, Nature.
[150] Y. Sakaki,et al. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes , 2008, Nature.
[151] Oliver H. Tam,et al. Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes , 2008, Nature.
[152] A. G. de Herreros,et al. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. , 2008, Genes & development.
[153] Celso A. Espinoza,et al. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. , 2008, Molecular cell.
[154] Masaki Kaibori,et al. Natural antisense transcript stabilizes inducible nitric oxide synthase messenger RNA in rat hepatocytes , 2007, Hepatology.
[155] M. Bartolomei,et al. Regulation of imprinting in clusters: noncoding RNAs versus insulators. , 2008, Advances in genetics.
[156] R. Breaker,et al. In-line probing analysis of riboswitches. , 2008, Methods in molecular biology.
[157] M. Lynch. The evolution of genetic networks by non-adaptive processes , 2007, Nature Reviews Genetics.
[158] M. Todesco,et al. Target mimicry provides a new mechanism for regulation of microRNA activity , 2007, Nature Genetics.
[159] M. Takeichi,et al. The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons , 2007, Journal of Cell Science.
[160] Cameron S. Osborne,et al. Intergenic Transcription, Cell-Cycle and the Developmentally Regulated Epigenetic Profile of the Human Beta-Globin Locus , 2007, PloS one.
[161] Howard Y. Chang,et al. Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs , 2007, Cell.
[162] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[163] L. Maquat,et al. Staufen1 regulates diverse classes of mammalian transcripts , 2007, The EMBO journal.
[164] A. Ferguson-Smith,et al. Mechanisms regulating imprinted genes in clusters. , 2007, Current opinion in cell biology.
[165] Sachi Inagaki,et al. Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA , 2007, Nature Cell Biology.
[166] Kazuho Ikeo,et al. Transcriptional Interferences in cis Natural Antisense Transcripts of Humans and Mice , 2007, Genetics.
[167] Jeannie T. Lee,et al. Perinucleolar Targeting of the Inactive X during S Phase: Evidence for a Role in the Maintenance of Silencing , 2007, Cell.
[168] Juan Pablo Couso,et al. Peptides Encoded by Short ORFs Control Development and Define a New Eukaryotic Gene Family , 2007, PLoS biology.
[169] Jeannie T. Lee,et al. The search for a marsupial XIC reveals a break with vertebrate synteny , 2007, Chromosome Research.
[170] B. Cullen,et al. The imprinted H19 noncoding RNA is a primary microRNA precursor. , 2007, RNA.
[171] J. Mattick,et al. The relationship between non-protein-coding DNA and eukaryotic complexity. , 2007, BioEssays : news and reviews in molecular, cellular and developmental biology.
[172] Ana Serra Barros,et al. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript , 2007, Nature.
[173] K. Struhl. Transcriptional noise and the fidelity of initiation by RNA polymerase II , 2007, Nature Structural &Molecular Biology.
[174] Vincenzo Pirrotta,et al. Polycomb silencing mechanisms and the management of genomic programmes , 2007, Nature Reviews Genetics.
[175] Y. Hoki,et al. Tsix defective in splicing is competent to establish Xist silencing , 2006, Development.
[176] Anke Sparmann,et al. Polycomb silencers control cell fate, development and cancer , 2006, Nature Reviews Cancer.
[177] K. Weeks,et al. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution , 2006, Nature Protocols.
[178] C. Rivetti,et al. Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy , 2006, Nucleic acids research.
[179] Laurent Duret,et al. The Xist RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding Gene , 2006, Science.
[180] C. Kanduri,et al. The length of the transcript encoded from the Kcnq1ot1 antisense promoter determines the degree of silencing , 2006, The EMBO journal.
[181] I. Grummt,et al. Intergenic transcripts regulate the epigenetic state of rRNA genes. , 2006, Molecular cell.
[182] Jeannie T. Lee,et al. A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. , 2006, Molecular cell.
[183] Roland Eils,et al. Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation , 2006, Nature Cell Biology.
[184] Chia-Lun Tsai,et al. Transient Homologous Chromosome Pairing Marks the Onset of X Inactivation , 2006, Science.
[185] P. Glenister,et al. Identification of an imprinting control region affecting the expression of all transcripts in the Gnas cluster , 2006, Nature Genetics.
[186] L. Paillard,et al. AU-rich elements and associated factors: are there unifying principles? , 2006, Nucleic acids research.
[187] Joseph C. Pearson,et al. Modulating Hox gene functions during animal body patterning , 2005, Nature Reviews Genetics.
[188] Jernej Ule,et al. CLIP: a method for identifying protein-RNA interaction sites in living cells. , 2005, Methods.
[189] Fred Winston,et al. in Saccharomyces cerevisiae , 2005 .
[190] A. Holder,et al. Antibody-based therapies for malaria , 2005, Nature Reviews Microbiology.
[191] S. Batalov,et al. Antisense Transcription in the Mammalian Transcriptome , 2005, Science.
[192] S. Batalov,et al. A Strategy for Probing the Function of Noncoding RNAs Finds a Repressor of NFAT , 2005, Science.
[193] S. Salzberg,et al. The Transcriptional Landscape of the Mammalian Genome , 2005, Science.
[194] D. Tuan,et al. The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter. , 2005, Journal of molecular biology.
[195] Y. Hoki,et al. Tsix silences Xist through modification of chromatin structure. , 2005, Developmental cell.
[196] S. Nadot,et al. Evolution of genome size across some cultivated Allium species. , 2005, Genome.
[197] S. Chuang,et al. Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas. , 2005, Human molecular genetics.
[198] A. Hüttenhofer,et al. Non-coding RNAs: hope or hype? , 2005, Trends in genetics : TIG.
[199] M. Gerstein,et al. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability , 2005, Nucleic acids research.
[200] Luc DesGroseillers,et al. Mammalian Staufen1 Recruits Upf1 to Specific mRNA 3′UTRs so as to Elicit mRNA Decay , 2005, Cell.
[201] Thomas E. Royce,et al. Global Identification of Human Transcribed Sequences with Genome Tiling Arrays , 2004, Science.
[202] D. Tuan,et al. HS2 Enhancer Function Is Blocked by a Transcriptional Terminator Inserted between the Enhancer and the Promoter*[boxs] , 2004, Journal of Biological Chemistry.
[203] Vincent Laudet,et al. Principles for modulation of the nuclear receptor superfamily , 2004, Nature Reviews Drug Discovery.
[204] Ram Samudrala,et al. Mouse transcriptome: Neutral evolution of ‘non-coding’ complementary DNAs , 2004, Nature.
[205] Celso A. Espinoza,et al. B2 RNA binds directly to RNA polymerase II to repress transcript synthesis , 2004, Nature Structural &Molecular Biology.
[206] Fred Winston,et al. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene , 2004, Nature.
[207] Christophe Dez,et al. RNA structure and function in C/D and H/ACA s(no)RNPs. , 2004, Current opinion in structural biology.
[208] P H Watson,et al. The steroid receptor RNA activator is the first functional RNA encoding a protein , 2004, FEBS letters.
[209] Peter E Wright,et al. Structure, dynamics, and catalytic function of dihydrofolate reductase. , 2004, Annual review of biophysics and biomolecular structure.
[210] N. Brockdorff,et al. Reactivation of the Paternal X Chromosome in Early Mouse Embryos , 2004, Science.
[211] D. Reinberg,et al. Epigenetic Dynamics of Imprinted X Inactivation During Early Mouse Development , 2004, Science.
[212] N. Nomura,et al. Complete sequencing and characterization of 21,243 full-length human cDNAs , 2004, Nature Genetics.
[213] F. Ayala,et al. Pseudogenes: are they "junk" or functional DNA? , 2003, Annual review of genetics.
[214] Michael Thomas,et al. MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer , 2003, Oncogene.
[215] J. Rinn,et al. The transcriptional activity of human Chromosome 22. , 2003, Genes & development.
[216] K. Sugimura,et al. A novel steroid receptor co-activator protein (SRAP) as an alternative form of steroid receptor RNA-activator gene: expression in prostate cancer cells and enhancement of androgen receptor activity. , 2003, The Biochemical journal.
[217] E. Birney,et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs , 2002, Nature.
[218] R. Lanz,et al. Distinct RNA motifs are important for coactivation of steroid hormone receptors by steroid receptor RNA activator (SRA) , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[219] Neil Brockdorff,et al. Enox, a novel gene that maps 10 kb upstream of Xist and partially escapes X inactivation. , 2002, Genomics.
[220] N. Proudfoot,et al. Transcriptional collision between convergent genes in budding yeast , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[221] Laurent Duret,et al. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. , 2000, Genome research.
[222] D. Engelke,et al. Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes. , 2002, Annual review of biochemistry.
[223] T. Gregory,et al. Coincidence, coevolution, or causation? DNA content, cellsize, and the C‐value enigma , 2001, Biological reviews of the Cambridge Philosophical Society.
[224] B. Peculis,et al. RNA-binding proteins: If it looks like a sn(o)RNA… , 2000, Current Biology.
[225] S. Tilghman,et al. The Dlk1 and Gtl2 genes are linked and reciprocally imprinted. , 2000, Genes & development.
[226] R. Lyle,et al. The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1 , 2000, Nature Genetics.
[227] M. Groudine,et al. β-globin Gene Switching and DNase I Sensitivity of the Endogenous β-globin Locus in Mice Do Not Require the Locus Control Region , 2000 .
[228] P. Fraser,et al. Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus. , 2000, Molecular cell.
[229] A. Feinberg,et al. Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith-Wiedemann syndrome and is independent of insulin-like growth factor II imprinting. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[230] Neil J McKenna,et al. A Steroid Receptor Coactivator, SRA, Functions as an RNA and Is Present in an SRC-1 Complex , 1999, Cell.
[231] Jeannie T. Lee,et al. Tsix, a gene antisense to Xist at the X-inactivation centre , 1999, Nature Genetics.
[232] J. Steitz,et al. Classification of gas5 as a Multi-Small-Nucleolar-RNA (snoRNA) Host Gene and a Member of the 5′-Terminal Oligopyrimidine Gene Family Reveals Common Features of snoRNA Host Genes , 1998, Molecular and Cellular Biology.
[233] S. Tilghman,et al. Igf2 imprinting does not require its own DNA methylation or H19 RNA. , 1998, Genes & development.
[234] C. Milcarek,et al. Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels. , 1997, Nucleic acids research.
[235] H. Ashe,et al. Intergenic transcription and transinduction of the human beta-globin locus. , 1997, Genes & development.
[236] J. Mcneil,et al. XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure , 1996, The Journal of cell biology.
[237] Michael R. Green,et al. Gene Expression , 1993, Progress in Gene Expression.
[238] Carolyn J. Brown,et al. The human XIST gene: Analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus , 1992, Cell.
[239] Dominic P. Norris,et al. The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus , 1992, Cell.
[240] D. Grunwald,et al. Antisense RNA and p53 Regulation in Induced Murine Cell Differentiation , 1992, Annals of the New York Academy of Sciences.
[241] M. Lazar,et al. Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA. , 1991, The Journal of biological chemistry.
[242] M. Bartolomei,et al. Parental imprinting of the mouse H19 gene , 1991, Nature.
[243] Carolyn J. Brown,et al. Localization of the X inactivation centre on the human X chromosome in Xq13 , 1991, Nature.
[244] M. Lazar,et al. Gene expression from the c-erbA alpha/Rev-ErbA alpha genomic locus. Potential regulation of alternative splicing by opposite strand transcription. , 1990, The Journal of biological chemistry.
[245] J. Battey,et al. N-myc mRNA forms an RNA-RNA duplex with endogenous antisense transcripts , 1990, Molecular and cellular biology.
[246] E. Dees,et al. The product of the H19 gene may function as an RNA , 1990, Molecular and cellular biology.
[247] M. Lazar,et al. A novel member of the thyroid/steroid hormone receptor family is encoded by the opposite strand of the rat c-erbA alpha transcriptional unit , 1989, Molecular and cellular biology.
[248] S. H. Munroe,et al. Antisense RNA inhibits splicing of pre‐mRNA in vitro. , 1988, The EMBO journal.
[249] M. Monk,et al. X-chromosome inactivation mosaicism in the three germ layers and the germ line of the mouse embryo. , 1983, Journal of embryology and experimental morphology.
[250] R. Lewin. Repeated DNA still in search of a function. , 1982, Science.
[251] J. Gall,et al. Chromosome structure and the C-value paradox , 1981, The Journal of cell biology.
[252] F. Crick,et al. Selfish DNA: the ultimate parasite , 1980, Nature.
[253] M. Monk,et al. Sequential X chromosome inactivation coupled with cellular differentiation in early mouse embryos , 1979, Nature.
[254] B John,et al. Functional aspects of satellite DNA and heterochromatin. , 1979, International review of cytology.
[255] R. Roberts,et al. An amazing sequence arrangement at the 5′ ends of adenovirus 2 messenger RNA , 1977, Cell.
[256] P. Sharp,et al. Spliced segments at the 5′ terminus of adenovirus 2 late mRNA* , 1977, Proceedings of the National Academy of Sciences.
[257] J. Yunis,et al. Localization of chromosomal RNA in human G-banded metaphase chromosomes. , 1977, Experimental cell research.
[258] M. Sasaki,et al. Preferential inactivation of the paternally derived X chromosome in the extraembryonic membranes of the mouse , 1975, Nature.
[259] D. Holmes,et al. Chromosomal RNA: Its Properties , 1972, Science.
[260] D. Comings. The structure and function of chromatin. , 1972, Advances in human genetics.
[261] S. Ohno,et al. So much "junk" DNA in our genome. , 1972, Brookhaven symposia in biology.
[262] J. Yunis,et al. Heterochromatin, Satellite DNA, and Cell Function , 1971, Science.
[263] R. Britten,et al. Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty , 1971, The Quarterly Review of Biology.
[264] C. A. Thomas. The genetic organization of chromosomes. , 1971, Annual review of genetics.
[265] R. Britten,et al. Gene regulation for higher cells: a theory. , 1969, Science.
[266] J. Monod,et al. Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.
[267] M. Lyon. Gene Action in the X-chromosome of the Mouse (Mus musculus L.) , 1961, Nature.
[268] A. Mirsky,et al. THE DESOXYRIBONUCLEIC ACID CONTENT OF ANIMAL CELLS AND ITS EVOLUTIONARY SIGNIFICANCE , 1951, The Journal of general physiology.