Multi-disciplinary methods to define RNA-protein interactions and regulatory networks.
暂无分享,去创建一个
[1] A. Klug,et al. Correlation between structural transformation and cleavage of the major head protein of T4 bacteriophage , 1976, Cell.
[2] Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies. , 1984, Molecular and cellular biology.
[3] P. Sharp,et al. Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. , 1989, Genes & development.
[4] M. Wickens,et al. Purification of RNA and RNA-protein complexes by an R17 coat protein affinity method. , 1990, Nucleic acids research.
[5] J. G. Patton,et al. Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing. , 1991, Genes & development.
[6] K. Williams,et al. Identification of amino acid residues at interface of protein-nucleic acid complexes by photochemical cross-linking. , 1991, Methods in enzymology.
[7] G. Dreyfuss,et al. Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. , 1992, The EMBO journal.
[8] R. Darnell,et al. The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo , 1997, Molecular and cellular biology.
[9] R. Singer,et al. Localization of ASH1 mRNA particles in living yeast. , 1998, Molecular cell.
[10] S K Burley,et al. Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. , 1999, Structure.
[11] S. Kostka,et al. A General Approach for Identification of RNA-Protein Cross-linking Sites within Native Human Spliceosomal Small Nuclear Ribonucleoproteins (snRNPs) , 2000, The Journal of Biological Chemistry.
[12] S K Burley,et al. The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[13] E. K. White,et al. PUM2, a novel murine puf protein, and its consensus RNA-binding site. , 2001, RNA.
[14] P. Zamore,et al. Crystal structure of a Pumilio homology domain. , 2001, Molecular cell.
[15] Hanno Steen,et al. Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry. , 2002, Mass spectrometry reviews.
[16] Phillip D. Zamore,et al. Modular Recognition of RNA by a Human Pumilio-Homology Domain , 2002, Cell.
[17] John D. Storey,et al. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[18] R. Reed,et al. Purification of Functional RNA‐Protein Complexes using MS2‐MBP , 2003, Current protocols in molecular biology.
[19] Juan Valcárcel,et al. Building specificity with nonspecific RNA-binding proteins , 2005, Nature Structural &Molecular Biology.
[20] S. Eddy,et al. Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. , 2005, Genes & development.
[21] N. Windbichler,et al. Isolation of specific RNA-binding proteins using the streptomycin-binding RNA aptamer , 2006, Nature Protocols.
[22] Daniel Herschlag,et al. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[23] Tommi Kajander,et al. Fragile X mental retardation syndrome: structure of the KH1-KH2 domains of fragile X mental retardation protein. , 2007, Structure.
[24] A. Krogh,et al. Molecular Composition of IMP1 Ribonucleoprotein Granules*S , 2007, Molecular & Cellular Proteomics.
[25] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[26] Shalini Sharma. Isolation of a sequence-specific RNA binding protein, polypyrimidine tract binding protein, using RNA affinity chromatography. , 2008, Methods in molecular biology.
[27] D. Engelke,et al. RNA affinity tags for the rapid purification and investigation of RNAs and RNA-protein complexes. , 2008, Methods in molecular biology.
[28] P. Sharp,et al. Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites , 2008, Science.
[29] C. Mayr,et al. Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells , 2009, Cell.
[30] Sanjay Tyagi,et al. Imaging intracellular RNA distribution and dynamics in living cells , 2009, Nature Methods.
[31] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[32] Matthias Mann,et al. Unbiased RNA–protein interaction screen by quantitative proteomics , 2009, Proceedings of the National Academy of Sciences.
[33] David Tollervey,et al. Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs , 2009, Proceedings of the National Academy of Sciences.
[34] Scott B. Dewell,et al. Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP , 2010, Cell.
[35] Kotb Abdelmohsen,et al. Posttranscriptional regulation of cancer traits by HuR , 2010, Wiley interdisciplinary reviews. RNA.
[36] Fatima Al-Shahrour,et al. Musashi-2 regulates normal hematopoiesis and promotes aggressive myeloid leukemia , 2010, Nature Medicine.
[37] S. Almo,et al. ZBP1 recognition of beta-actin zipcode induces RNA looping. , 2010, Genes & development.
[38] Michael Briese,et al. iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions , 2010, PLoS biology.
[39] Nicholas T. Ingolia,et al. Mammalian microRNAs predominantly act to decrease target mRNA levels , 2010, Nature.
[40] N. Mukherjee,et al. Systematic analysis of posttranscriptional gene expression , 2010, Wiley interdisciplinary reviews. Systems biology and medicine.
[41] Toshiro K. Ohsumi,et al. Genome-wide identification of polycomb-associated RNAs by RIP-seq. , 2010, Molecular cell.
[42] Takahiro Ito,et al. Regulation of myeloid leukemia by the cell fate determinant Musashi , 2010, Nature.
[43] J. Ule,et al. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution , 2010, Nature Structural &Molecular Biology.
[44] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[45] D. Bartel,et al. Formation, Regulation and Evolution of Caenorhabditis elegans 3′UTRs , 2010, Nature.
[46] R. Abagyan,et al. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. , 2011, Structure.
[47] Uwe Ohler,et al. Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability. , 2011, Molecular cell.
[48] Lan Huang,et al. Quantitative Profiling of In Vivo-assembled RNA-Protein Complexes Using a Novel Integrated Proteomic Approach* , 2011, Molecular & Cellular Proteomics.
[49] T. Glisovic,et al. Structure of a Key Intermediate of the SMN Complex Reveals Gemin2's Crucial Function in snRNP Assembly , 2011, Cell.
[50] Norman E. Davey,et al. Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins , 2012, Cell.
[51] Larry N. Singh,et al. U1 snRNP Determines mRNA Length and Regulates Isoform Expression , 2012, Cell.
[52] Stefan Hüttelmaier,et al. Insulin-like growth factor 2 mRNA-binding proteins (IGF2BPs): post-transcriptional drivers of cancer progression? , 2012, Cellular and Molecular Life Sciences.
[53] Uwe Ohler,et al. FMR1 targets distinct mRNA sequence elements to regulate protein expression , 2012, Nature.
[54] Richard Bonneau,et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. , 2012, Molecular cell.
[55] Matthias Mann,et al. Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions , 2012, Nucleic acids research.
[56] R. Gregory,et al. How does Lin28 let-7 control development and disease? , 2012, Trends in cell biology.
[57] S. Almo,et al. Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. , 2012, Genes & development.
[58] P. Northcott,et al. The RNA-binding protein Musashi1 affects medulloblastoma growth via a network of cancer-related genes and is an indicator of poor prognosis. , 2012, The American journal of pathology.
[59] Thomas Tuschl,et al. Identification of RNA–protein interaction networks using PAR‐CLIP , 2012, Wiley interdisciplinary reviews. RNA.