Succession of microbial consortia in the developing infant gut microbiome
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L. T. Angenent | R. Knight | R. Ley | J. Stombaugh | N. Scalfone | J. Koenig | A. Spor | A. Fricker | Nicholas B. Scalfone | R. Knight | Jesse Stombaugh
[1] J. Chapman,et al. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome , 2008, Proceedings of the National Academy of Sciences.
[2] D. Relman,et al. Assembly of the human intestinal microbiota. , 2006, Trends in ecology & evolution.
[3] Wendy S. Garrett,et al. Communicable Ulcerative Colitis Induced by T-bet Deficiency in the Innate Immune System , 2007, Cell.
[4] Folker Meyer,et al. 37. The Metagenomics RAST Server: A Public Resource for the Automatic Phylogenetic and Functional Analysis of Metagenomes , 2011 .
[5] Lynn K. Carmichael,et al. A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis , 2003, Science.
[6] F. Bäckhed,et al. Obesity alters gut microbial ecology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[7] E. Mardis,et al. An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.
[8] Rob Knight,et al. PyNAST: a flexible tool for aligning sequences to a template alignment , 2009, Bioinform..
[9] Daniel B. DiGiulio,et al. Development of the Human Infant Intestinal Microbiota , 2007, PLoS biology.
[10] G. Macfarlane,et al. Sulphate reducing bacteria and hydrogen metabolism in the human large intestine. , 1993, Gut.
[11] R. Knight,et al. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.
[12] R. Ley,et al. Innate immunity and intestinal microbiota in the development of Type 1 diabetes , 2008, Nature.
[13] Andreas Wilke,et al. phylogenetic and functional analysis of metagenomes , 2022 .
[14] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[15] Rob Knight,et al. Host-bacterial coevolution and the search for new drug targets. , 2008, Current opinion in chemical biology.
[16] R. Knight,et al. 279 Altered Gut Microbiota in Toll-Like Receptor-5 (TLR5) Deficient Mice Results in Metabolic Syndrome , 2010 .
[17] R. Knight,et al. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex , 2008, Nature Methods.
[18] H. Harmsen,et al. Effects of Alternative Dietary Substrates on Competition between Human Colonic Bacteria in an Anaerobic Fermentor System , 2003, Applied and Environmental Microbiology.
[19] Tracy K. Teal,et al. Systematic artifacts in metagenomes from complex microbial communities , 2009, The ISME Journal.
[20] D. Faith. Conservation evaluation and phylogenetic diversity , 1992 .
[21] Y. Benno,et al. Meat as a First Complementary Food for Breastfed Infants: Feasibility and Impact on Zinc Intake and Status , 2006, Journal of pediatric gastroenterology and nutrition.
[22] Alain Baccini,et al. CCA: An R Package to Extend Canonical Correlation Analysis , 2008 .
[23] Gapped BLAST and PSI-BLAST: A new , 1997 .
[24] P. Turnbaugh,et al. Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.
[25] Howard Ochman,et al. Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant , 2010, Genome biology and evolution.
[26] R. Knight,et al. Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data , 2009, The ISME Journal.
[27] Les Dethlefsen,et al. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing , 2008, PLoS biology.
[28] Hiroshi Mori,et al. Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.
[29] R. Ley,et al. Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5 , 2010, Science.
[30] M. Kalliomäki,et al. New therapeutic strategy for combating the increasing burden of allergic disease: Probiotics-A Nutrition, Allergy, Mucosal Immunology and Intestinal Microbiota (NAMI) Research Group report. , 2005, The Journal of allergy and clinical immunology.
[31] R. Knight,et al. Bacterial Community Variation in Human Body Habitats Across Space and Time , 2009, Science.
[32] R. Knight,et al. The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice , 2009, Science Translational Medicine.
[33] Alok J. Saldanha,et al. Java Treeview - extensible visualization of microarray data , 2004, Bioinform..
[34] Jeremy K. Nicholson,et al. Gut microbiota: a potential new territory for drug targeting , 2008, Nature Reviews Drug Discovery.
[35] H. Flint,et al. Reduced Dietary Intake of Carbohydrates by Obese Subjects Results in Decreased Concentrations of Butyrate and Butyrate-Producing Bacteria in Feces , 2006, Applied and Environmental Microbiology.
[36] Alexander F. Auch,et al. MEGAN analysis of metagenomic data. , 2007, Genome research.
[37] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[38] L. Stone,et al. The checkerboard score and species distributions , 1990, Oecologia.
[39] B. Silverman,et al. Canonical correlation analysis when the data are curves. , 1993 .
[40] R. Knight,et al. The Human Microbiome Project , 2007, Nature.
[41] Harry J Flint,et al. Interactions and competition within the microbial community of the human colon: links between diet and health. , 2007, Environmental microbiology.
[42] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.